Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026926627.2 |
| length | 997 |
| RNA type | mRNA |
| GC content | 0.36 |
| exon number | 4 |
| gene id | slirp |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 27004109 ~ 27006749 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| K25095 | SLIRP; SRA stem-loop-interacting RNA-binding protein, mitochondrial |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU203692 | lncRNA | upstream | 30167 | 26973696 ~ 26973942 (+) | True | G172097 |
| TU203716 | lncRNA | upstream | 35693 | 26967610 ~ 26968416 (+) | True | G172114 |
| TU203720 | lncRNA | upstream | 36573 | 26967332 ~ 26967536 (+) | True | G172118 |
| TU203694 | lncRNA | upstream | 43871 | 26867117 ~ 26960238 (+) | True | G172099 |
| XR_004578997.1 | lncRNA | upstream | 164631 | 26803056 ~ 26839478 (+) | True | LOC117598329 |
| TU203994 | lncRNA | downstream | 326655 | 27333404 ~ 27333880 (+) | True | G172352 |
| TU204017 | lncRNA | downstream | 488153 | 27494902 ~ 27530777 (+) | False | LOC113533960 |
| XR_003403471.2 | lncRNA | downstream | 488174 | 27494923 ~ 27531363 (+) | False | LOC113533960 |
| TU204018 | lncRNA | downstream | 520926 | 27527675 ~ 27530777 (+) | True | LOC113533960 |
| TU204053 | lncRNA | downstream | 558557 | 27565306 ~ 27568639 (+) | True | G172405 |
| XM_026926532.2 | mRNA | upstream | 89880 | 26903639 ~ 26914229 (+) | True | hhipl1 |
| XM_034307767.1 | mRNA | upstream | 584902 | 26407679 ~ 26419207 (+) | True | vrk1 |
| XM_026926048.2 | mRNA | upstream | 585054 | 26405390 ~ 26419055 (+) | False | vrk1 |
| XM_026926082.2 | mRNA | upstream | 646966 | 26349862 ~ 26357143 (+) | True | ak7b |
| XM_026926030.2 | mRNA | downstream | 1185 | 27007934 ~ 27125905 (+) | True | adck1 |
| XM_034307774.1 | mRNA | downstream | 1185 | 27007934 ~ 27125905 (+) | False | adck1 |
| XM_026926031.2 | mRNA | downstream | 1185 | 27007934 ~ 27125905 (+) | False | adck1 |
| XM_026926092.2 | mRNA | downstream | 149594 | 27156343 ~ 27467566 (+) | True | nrxn3a |
| XM_026926102.2 | mRNA | downstream | 149594 | 27156343 ~ 27467566 (+) | False | nrxn3a |
| trnat-ugu_12 | other | upstream | 88679 | 26915358 ~ 26915430 (+) | True | trnat-ugu_12 |
| TU202966 | other | upstream | 1685848 | 25315560 ~ 25318261 (+) | False | samd4a |
| TU202922 | other | upstream | 1827277 | 25176376 ~ 25176832 (+) | False | LOC117598238 |
| TU202767 | other | upstream | 1996343 | 25003983 ~ 25007766 (+) | True | G171329 |
| TU202761 | other | upstream | 2004060 | 24994493 ~ 25000049 (+) | False | cx28.6 |
| XR_003403449.2 | other | downstream | 149594 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403450.2 | other | downstream | 149594 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403451.2 | other | downstream | 149594 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| trnak-uuu_7 | other | downstream | 718458 | 27725207 ~ 27725279 (+) | True | trnak-uuu_7 |
| TU205054 | other | downstream | 2062971 | 29069720 ~ 29073089 (+) | True | G173221 |
