RNA id: XM_026926704.2


Basic Information

Item Value
RNA id XM_026926704.2
length 3768
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC113534104
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23780015 ~ 23792144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGCGAACCtcctttttgtgtttgttttgcagacagACGCTGGAGGCTTCTTCCACTGGTGCCGTGTAAGACCTCCACTAGCGCAAtacatctccctctctccctcactcacacGTCCGAGAGCAGCCCTGGATACAGATGGACCAGCAGGCCCAGTCCTATATGCTTGCCAGTCTGACACGGCCTCACTCAGAGCAGCTGCTGCAAGGCCTACAGCTGTTACGGCAAGATCACGAACTGTGCGACATCGTGCTACGAGTGGGCGATGCCAAGATCCATGCACACAAAGTGGTGCTGGCCAGCATCAGCCCATACTTCAAGGCCATGTTTACAGGCAATCTGTCAGAGAAGGAGACCTCAGAGGTTGAGTTTCAGTGCATTGATGAAGCTGCACTACAGGCCATCGTGGAATATGCGTACACAGGAACGGTTTTCATCTCGCAGGAAACAGTGGAGTCTCTCCTTCCAGCTGCCAATCTCCTCCAGGTGAAACTTGTGCTAAAAGAGTGCTGCAGCTTCCTGGAGAGCCAGCTAGATGCCGCAAACTGCATCGGCATCTCGCGCTTCGCTGAGACATACGGCTGCCATGACCTTTGTCTAGCAGCCACCAAGTTTATCTGCGAGAACTTTGAGGAGGTCTGCCGGACAGAGGAGTTCTTCGAGCTGACCagggaggagctggatgagATCGTGTCCAGTGATTGCCTCAAAGTGCTCACGGAGGAGACGGTCTTTTATGCGCTTGAGTCTTGGATCAAGTATGACCTGAGTGAGAGGCAGCAGTACCTGGCCCAGTTACTACACAGCGTGCGGCTGCCTTTGCTCAGTGTGAAGTTTCTGACGCGCCTCTACGAAGCCAATCACCTCGTCCGGGATGACCACGCGTGCAAACATCTTCTCAACGAGGCCCTTAAATATCATTTCATGCCAGAGCACAGGCTTTCCTACCAGACAGTGCTGTCCACCAGACCACGCTGTGCACCAAAGGTTCTTGTTGCAGTAGGAGGCAAGGCGGGACTTTTTGCCACTTTGGAAAGTATGGAGATGTACTTCCCTCAGACAGACTCGTGGATTGGCCTGGCCCCGCTCAGCATGCCCCGCTGTGAGTTCGGCGTTGCCGTCCTGGACCAGAAGGTGTATGTGGTGGGTGGTATTGCCACACACATGCGCCAGGGCATCAGCTACAGGCGGCATGAGAGCACTGTTGAGAGATGGGATCCAGACAGCAACACCTGGTCCTCGGTGGAGCGCATGGCAGAGTGCAGGAGCACGCTAGGGGTTGTAGTGTTAGCAGGGGAGCTTTATGCACTTGGGGGCTATGATGGTCAGTACTACCTCCAGTCGGTGGAGAAATATGTACCCAAAGTGAAAGAGTGGCAGCCTGTGGCACCCATGACCAAATCACGCAGTTGCTTTGCCAGCGCTGTGCTGAACGGCATGGTTTATGCTATTGGAGGCTACGGTCCTGCTCATATGAACAGCGTGGAGCGCTATGACCCCAGCAAGGATTCCTGGGAAATGGTAGCACCCATGGCTAATAAAAGGATAAACTTTGGAGTGGGAGTCATGTTAGGGTTTATATTTGTCGTTGGTGGACATAATGGTGTATCACATTTGTCCAGCATTGAAAGATACGACCCTCACCAGAACCAGTGGACAGCATGTCGACCCATGAACGAACCCCGCACAGGGGTCGGCTCAGCCATCGTGGACAACTGCCTCTATGTGGTGGGGGGTCATTCAGGGTCATCGTACCTGAACACAGTGCAGCGCTATGACCCCATCTCAGACAGCTGGTTGGACTCCAGTGGCATGATGTACTGCCGCTGTAACTTTGGCCTTACTGCCCTTTGACCCCTGGGGCAGTTGTAGGGTACTTATTGTTGTTTGCATTTCTTTTATCTACTCCCGTTTCATCTTTGGAACTGCGTTCCTCAGAAGGTTGCTGCAGCTGTGTGGAAGCTGGTCCAGCACTTTTCTTTTCTGGATTTTGGGGTTTTAAAGAAGTAGAGGCAAAGGATCCGGAAGACGTTTTCCATAATGTGAGCAAAGAGACTTCTCCAAAGCTGCGTGGGCTCTGCAAAGGACTAGAAGGTGCTGAACGGCAGGAGACGTCAGTCACTTTGGGGTTTCTTGGGTGGCACTGTGGCATTTGTCTGTGGTAATGCCATTTATTCTCTGAGCACTCTTTTTAACCTAGCTACAGGTGCAGCTAGCAcctttaatttttgtttgtctcCAGGTCTATGCCTGTAGATGATGTGTATGCATGTCATGGAAGGGatgaaatatttgtgtgtgtatgtgtgtgttcggggtatgtgtgtgtgtgtgtgcgcgcgcaggACAAGCACTCAGGCTCGGGGTTGAAATCACCGACTGAGTTTGAAAAGTCTGCATCTAAAGTAGTGCTTcacaaaaaagtggaaaaaacttTATTCACACTTAAAAAGGGCTGCCTTTCTTTCAACGTGTATATACTTTGACTAAAGAATATAGATTATATCCTCCAGTGCATTGCCTGTAAATGTTATctgcactggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcgtgcgtgcgtgcatgtgtggaCTGAATATATTCATGTTTCACTGCAGTCTCTTAAGAATTCTTCCAAGTTCTACACATCTCTTCCTTGGTAGCTGTAGaacatttgtttttagttttgtcaTAAATGTACTTATTTTGCCATGCCATGTCTTTATTCCACACCTTTTCTCTTTCAGGCGTTGAATGTgatcgtctttttttttttttttttaaaccattgcAGAGGTGTGGGAGTTCAAAGTAAAAATCTACTGGTGCTAGTTAATAATTCAGgattcatttcttttgtcaGTCATTTCGCAAAAGCgtatttgatattattttttaatttgcatgtttgtcatgttcttgtgttatttttacattgatttaaaaaaaaaaaaaagaaaagatgctCCATCAAGCCCTGTGCAATAACATCACTCTAATGAATTATGCCCAGCTCAGCAGCCGGAACTATAGCGTATAACGTATTCAGTTTGTCCACAGGATTATGCAGGGGTTTCTACAATAACCTCGTTCaatacaattctaacatttCACATCCTGATCACGCAGACTGAAGCTAGTTAGCCTTTCGAATCCAAATCCTGACTGAGTTTTTCTAATATATGTAGTTTTTTTCTATATGAAGAAGTTCAATAGAATTCAATTAAATCCAACAAATGTAACTATGACCAAATATCAGGTTGTGTGAGCTTGACACGTTCATGTAAAAGAATAATAGCGTATGTTAGATTCAAGCAGTTCTGTTATTAATCATAATGCATATCGTCCTTTACATTTCTGCACCTGTTCTCTAAAACAGAGCCTTTATCAAATAAACTATAATGGCGTCAACACTTAGAAATACTGTCTAACGTATCCTGTAATCGTTCCTGCGTCTTCATGTGAAGTGATTAAAAGCTGGTTATATGACGTGACTGAAGGCTAATTTCCCACAGCTGAAAAGACTTCACTATGATCAGAAATAAATCAGAGAGCACTCTTTGAGACCAGGGACCTCTTGGAAAACTCTTCAataaaataaccttttttttaaaaagcataattTAAAGGTGGaatagtcaatatttttcctataatagtttatatagtgtagtgtatatagtaatagTTTAAGCCATTGTCTCAGAACAATGAATATAACAcagctaaaaaa

Function

GO: NA

KEGG:

id description
K10464 KLHL28; kelch-like protein 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202111 lncRNA downstream 781 23777979 ~ 23779234 (-) True G170788
TU202110 lncRNA downstream 781 23778269 ~ 23779234 (-) False G170788
TU202129 lncRNA downstream 2704 23776555 ~ 23777311 (-) True G170805
TU202098 lncRNA downstream 35583 23720111 ~ 23744432 (-) True G170779
TU202118 lncRNA downstream 61246 23718545 ~ 23718769 (-) True G170795
TU202188 lncRNA upstream 101980 23894124 ~ 23894355 (-) True G170852
TU202202 lncRNA upstream 126281 23918425 ~ 23919023 (-) True G170866
TU202233 lncRNA upstream 203422 23995566 ~ 23998711 (-) True G170887
TU202284 lncRNA upstream 242364 24034508 ~ 24034898 (-) True G170936
TU202385 lncRNA upstream 455541 24247685 ~ 24248015 (-) True G171028
XM_026926007.2 mRNA downstream 19755 23740019 ~ 23760260 (-) True ptpreb
XM_026926008.2 mRNA downstream 28603 23740019 ~ 23751412 (-) False ptpreb
XM_034308327.1 mRNA downstream 44763 23721794 ~ 23735252 (-) True kctd3
XM_034307870.1 mRNA downstream 514950 23234593 ~ 23265065 (-) False spata17
XM_026926813.2 mRNA downstream 514950 23234999 ~ 23265065 (-) True spata17
XM_026926409.2 mRNA upstream 34904 23827048 ~ 23836772 (-) True soul3
XM_026926410.2 mRNA upstream 37701 23829845 ~ 23836772 (-) False soul3
XM_026926587.2 mRNA upstream 76947 23869091 ~ 23876957 (-) False LOC113534026
XM_034308281.1 mRNA upstream 76947 23869091 ~ 23876957 (-) False LOC113534026
XM_026926586.2 mRNA upstream 76947 23869091 ~ 23876957 (-) True LOC113534026
TU201673 other downstream 916248 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 1664139 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 2962799 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3046963 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3214216 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 1008939 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 1466695 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 1466695 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1786795 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 4107347 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile