RNA id: XM_026926785.2


Basic Information

Item Value
RNA id XM_026926785.2
length 2829
RNA type mRNA
GC content 0.42
exon number 16
gene id ero1a
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25240086 ~ 25252303 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGGAAGTTAATGACACAACCCACTTTCACACGCACTCTTACACGCTCTCtttcacacctacacacactctatctctctctaacacacagaACACATCCTAAACTCCAGCTTACAAGCGAGAGCTTGAATTCAGACTTGTGTATTGAAGTGTGTAGCTCAGGGCAGCAcaatgagattattattattgtgtataaacttgagtgtgcttgtgtttcctgtttcagGCAGTATGGCGAACTCTGCTGCACACAGGTGTTTCTGCAAAGTCACCGGTAGTCTGGACGACTGCGCCTGCGATGTGGAAACAATCGATGGCTTCAACAACAAGAAGCTCTTCCCCCAACTTCAGAAACTCCTTTCGTCTGATTATTTCAGGTTCTATAAGGTGAATCTGAATAACCCATGTCCGTTCTGGAGGGACAGCAGCAACTGTGGTCTCAGAGACTGTGCCGTTAAACCCTGCAAACCTAATGAAGTACCCGAGGGGCTGAAAACCAGCAGCTACAAGTACTCATTAGAGGCCAGCCAGCACACAAAGGAGTGTGAAATGGCAGAGAAGCTGGGCGCTGTCAATATCTCTCTAAGTGATGAAACCCGGCAGGCTCTGCTCGACTGGAACCGGCACGATGACGAGGCCGACCGTTTCTGCATGCATGATGATGAAGACTCTCCGGATTCGCAGTATGTCGATCTCCTCCTCAACCCTGAGCGATACACTGGATATAAGGGTCCTGAGGCCTGGCAGATATGGAACAGTATATATGAAGAAAACTGTTTCAAACCGTATACAGTTAAACGACCACTGAACCCTCTGGTGTCGAGCAGTGGAGACAGTGAAGGAAGGGGATTCTACAAGTGGCTGGAAGGTCTGTGTGTGGAGAAAAGAGCGTTCTTCAGGCTCGTCTCAGGACTGCATGCGAGCATAAATGTGCACTTGAGTGCCAGGTACCTGTTGGATGATAACTGGTTTGAGAGGAAGTGGGGTCCCAACGTCACTGAGTTCCAGCTGAGATTTGATGAAGAACTGACAAAAGGAGAAGGACCCAAACGTCTGAGGAATCTCTACTTCCTCTATCTGATCGAGCTCCGTGCCCTGGCTAAAGTCCTGCCTTTCTTTGAGCGtccctccatccatctgtaCACAGGAGAGGCAGAACAAGACAAGCAGACTAAAGAGCTGCTCTTAGAGCTCCTCCATATGGCCAAGTCTTTCCCATTGCATTTTGATGAAACCACACTGTTTGCAGGCGATAAGACAGAAGCAGCAAAGCTAAAAGAAGACCTCAGGCTGACTTTTAAGAACATCTCTAGGATCATGGACTGCGTAGGATGCTACAAGTGTAGACTGTGGGGCAAACTGCAGACCCAGGGTTTAGGTACAGTTCTAAAGATCCTGTTCTCAGAGAAGCAAATTGAAACTCTTCCTCAGTCCAGCAACGCCAAACCGTCCTTCCAGCTGAGTCGGCAGGAGATCGTTTCCCTCTTCAACGCTTTCGGGAGaatctcAACAAGTATTCAAGAACTGGAAAACTTCCGGAAACTGTTATCAGAGCTCAAGCAATGAGGTGATCTCAGCCTGATGTTATTCCTTCGCGTGGATGAACAGCCTGCTATCTATCAACCAAGACATGTTTGACGTTCCAAGTTGGCTTCTTTAGTTTTCCACAGGAATTAGGAGGAGATtgtagctaccagtttagcacaTCAGGTATTTCAACCAGACTTGTTCATGTGCTTTCCGACACTGTATCACATATTAttatctataaaaatggacaaaaggatACCACAGAACTAAAAACAATACTAACGGCCATTTTGTATCTGAATCATGTTCTTTCTCAGCACATAGTTTGGTGTCACTTGGTGTTATGTCATTATAGGTCATTATGTCGTTTTAGGCGTGCTTAGGTGTGATGCTTTAGGCAGGCAAATTGGTAGCTATAAGCTTTCTTGTTTAGCTATATTAGCTACAGAAGAAAACTTTCAaccaccaaacatgtcttggttgATTATAATAGGAGtaacaagaaatgaaaaaaaaaaaaatcatttttgccCAAACTGTTCATTTAAGCTCGACTCAGGAAGTGTGGTTGAAGATCATGAGAAACTTTACAGCCCAAAGAGAAAGTCTCAATGCCAATGAGATGTCCTTGAGGTATGAGATTTGGCAATACAGATGCCCCTAAACAAACCGAGCACTTTAATGACTGAGGATTAAATTTAGCATTTAGCACAATTTGCACTATGGCATATCTGAGGAatgtatttaacaaagaagTTTGGAGCGAAAATAAGAATTAGGACTACTCCCACataggattgttttttttctcagggaTTTAAAAGTCAAAATTTCAGAATCAATTAGACAATAATGTGGAAAATAGGCTTGTCGTTCTTGAGTCAGGTACTACTGATGAATAAGGATCATTTTTGGATGATTCTTCTATTGCATACAGTTGTTAAAACTATTGGTTTTTGCATTTCGTTTTGTATCTTGCATCACAATACTTGTCCATAGTTCACATTAGGTATCGTGATATTTAGTTGTATGTTAGAACAGATACgtcatctttaaaaaaagtacGTAAAGCATTACAAcatgaaacaggaaaaaaaataaattaaatagtaaatacatttacatatacatgcatacaGATGATGTGAGAAAACtgtattttgacttttttgtgATGGTAATATATTGTCTTATCGCCTGTGGTTCAGTAGGTTTacggatttttcttttttttctaccacAATTTGACAACAGCcatgtaaatgtgttcattccttaataaaaattatttacatgca

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0003756 protein disulfide isomerase activity molecular_function
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor molecular_function

KEGG:

id description
K10950 ERO1L; ERO1-like protein alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202841 lncRNA downstream 230697 25008099 ~ 25009389 (-) True G171381
TU202682 lncRNA downstream 313862 24856891 ~ 24926224 (-) False G171256
TU202679 lncRNA downstream 338046 24827641 ~ 24902040 (-) False G171256
TU203040 lncRNA upstream 9305 25261608 ~ 25262527 (-) True G171542
TU203043 lncRNA upstream 12065 25264368 ~ 25265970 (-) True G171545
TU203041 lncRNA upstream 15599 25267902 ~ 25271762 (-) True G171543
TU203078 lncRNA upstream 33739 25286042 ~ 25286781 (-) True G171572
TU203076 lncRNA upstream 34849 25287152 ~ 25289502 (-) True G171570
XM_026926883.2 mRNA downstream 33613 25182416 ~ 25206473 (-) False txndc16
XM_026926884.2 mRNA downstream 33613 25184047 ~ 25206473 (-) True txndc16
XM_034307982.1 mRNA downstream 133327 25056364 ~ 25106759 (-) False nid2a
XM_026925989.2 mRNA upstream 68207 25320510 ~ 25335259 (-) False gch1
XM_026925990.2 mRNA upstream 68207 25320510 ~ 25335257 (-) True gch1
XM_026926034.2 mRNA upstream 84243 25336546 ~ 25361861 (-) True wdhd1
XM_026926036.2 mRNA upstream 84243 25336546 ~ 25361859 (-) False wdhd1
XM_026926815.2 mRNA upstream 117202 25369505 ~ 25371805 (-) True socs4
TU202681 other downstream 432991 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2376319 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 3124210 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 4422870 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 4507034 20732930 ~ 20733052 (-) True LOC113530231
TU203072 other upstream 6536 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 6536 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 326636 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2647188 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2647188 27899491 ~ 27910890 (-) False si:ch73-204p21.2

Expression Profile