RNA id: XM_026926797.2


Basic Information

Item Value
RNA id XM_026926797.2
length 942
RNA type mRNA
GC content 0.46
exon number 11
gene id styx
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25389931 ~ 25396747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACGTCAGACGCTCCCTAAGCCGTGTGTCACGTGATCAGTTCCTAAACGGGGAGTAAACATGGCGGACACGCGTGTGGAGCTCCGAGACAAACTCCAGCGTAACTGCTAACGCTAGTTTAACGTCAGGCGTGTTTTTAATCAGCTTATAGTCGAGGTCTGGATATCGGACGCCCTTCATAAAGCTGCAGTATGGACGAGGGGAATAAAATCCAGTTTCCGTCCCTTCCTGTGTGCAAGGAAGACCAACTGGACTGGTCATATCCCATGCGAAGAGAGATGCAGGAAATCCTCCCCGGACTCTTCTTAGGGCCCTACTCTGCTGCGATGAAAAGCAAGctctctATACTGGAGAAGCATGGGATAACTCACATAGTGTGTGTTCGACAAGACATCGAGGCCAACTTCATCAAACCTAACTTCCCCCTCAAATTTAGATACCTTGTTTTAGATATTGCTGATAACCCCGTGGAGAACATCATTAAATATTTCCAAATGaCTAAAGAATTTATCGACGGCTGTTTAGAGACTGGAGGAAAGGTTCTTGTTCATGGGAATGCAGGGATTTCCAGAAGCGCCGCCTTAGTTATTGCTTACCTTATGGAAACGTTCGGCGTGAAGTACAGGGACGCTTTCAGTCACGTCCAGGAGCGGAGATTCTGCATCAACCCTAACGTAGGCTTCGTGCATCAACTACAGGAATATGAAGCGATCTATCTTGCCAGACTAACCATCAAGATGATGTCACCCATTCAGCTGGGTCGATCTTTCTCCATTCAAGCGGGAACGACAGGGAGCCGGAAACGAACACTAGAAGAAGATGACGATTTTGGGAATATGCAAGTTCAGGCAGCGCAGAACGGATAGACCATACTTTAGCGCTTAGCtgcattggatttttttttttgttttacatttttatgggatttaaaattgtaaatat

Function

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K18042 STYX; serine/threonine/tyrosine-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203103 lncRNA downstream 60 25389583 ~ 25389871 (-) True G171594
TU203079 lncRNA downstream 97993 25291426 ~ 25291938 (-) True G171573
TU203076 lncRNA downstream 100429 25287152 ~ 25289502 (-) True G171570
TU203078 lncRNA downstream 103150 25286042 ~ 25286781 (-) True G171572
TU203041 lncRNA downstream 118169 25267902 ~ 25271762 (-) True G171543
TU203256 lncRNA upstream 72757 25469504 ~ 25470074 (-) True G171710
TU203274 lncRNA upstream 107641 25504388 ~ 25509620 (-) True G171726
TU203311 lncRNA upstream 376757 25773504 ~ 25778966 (-) True G171755
TU203430 lncRNA upstream 581049 25977796 ~ 25978027 (-) True G171864
TU203440 lncRNA upstream 661498 26058245 ~ 26058509 (-) True G171874
XM_026926815.2 mRNA downstream 18126 25369505 ~ 25371805 (-) True socs4
XM_026926034.2 mRNA downstream 28070 25336546 ~ 25361861 (-) True wdhd1
XM_026926036.2 mRNA downstream 28072 25336546 ~ 25361859 (-) False wdhd1
XM_026925989.2 mRNA downstream 54672 25320510 ~ 25335259 (-) False gch1
XM_026925990.2 mRNA downstream 54674 25320510 ~ 25335257 (-) True gch1
XM_026926794.2 mRNA upstream 1343 25398090 ~ 25418463 (-) True ros1
XM_026926796.2 mRNA upstream 3154 25399901 ~ 25418463 (-) False ros1
XM_034307815.1 mRNA upstream 34576 25431323 ~ 25468569 (-) True zgc:85722
XM_026926044.2 mRNA upstream 34578 25431325 ~ 25468569 (-) False zgc:85722
XM_034308044.1 mRNA upstream 124617 25521364 ~ 25533476 (-) True LOC117598272
TU203074 other downstream 130569 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 130722 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 582836 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2526164 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 3274055 22115565 ~ 22115876 (-) True G170023
TU203284 other upstream 182192 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2502744 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2502744 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 2515490 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 3440145 28836892 ~ 29050026 (-) True G173287

Expression Profile