Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026926810.2 |
| length | 1204 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 4 |
| gene id | gsc |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047604.1 |
| NCBI id | CM018550.1 |
| chromosome length | 29376037 |
| location | 25904043 ~ 25910306 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0009948 | anterior/posterior axis specification | biological_process |
| GO:0009950 | dorsal/ventral axis specification | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0021999 | neural plate anterior/posterior regionalization | biological_process |
| id | description |
|---|---|
| K09324 | GSC; homeobox protein goosecoid |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU203215 | lncRNA | upstream | 125311 | 25682394 ~ 25778732 (+) | True | G171684 |
| TU203168 | lncRNA | upstream | 311294 | 25587489 ~ 25592749 (+) | True | G171647 |
| TU203132 | lncRNA | upstream | 381354 | 25518116 ~ 25522689 (+) | True | G171619 |
| TU203104 | lncRNA | upstream | 473121 | 25426891 ~ 25430922 (+) | True | LOC113534148 |
| TU203020 | lncRNA | upstream | 514538 | 25389366 ~ 25389505 (+) | True | G171523 |
| XR_004579001.1 | lncRNA | downstream | 715634 | 26625940 ~ 26686726 (+) | True | LOC117598331 |
| TU203645 | lncRNA | downstream | 879217 | 26789523 ~ 26789807 (+) | True | G172052 |
| XR_004578997.1 | lncRNA | downstream | 892750 | 26803056 ~ 26839478 (+) | True | LOC117598329 |
| XR_004578998.1 | lncRNA | downstream | 892750 | 26803056 ~ 26839478 (+) | False | LOC117598329 |
| TU203694 | lncRNA | downstream | 956811 | 26867117 ~ 26960238 (+) | True | G172099 |
| XM_026926595.2 | mRNA | upstream | 45620 | 25829865 ~ 25858423 (+) | True | dicer1 |
| XM_026926596.2 | mRNA | upstream | 49835 | 25829865 ~ 25854208 (+) | False | dicer1 |
| XM_026926597.2 | mRNA | upstream | 49835 | 25829865 ~ 25854208 (+) | False | dicer1 |
| XM_034308136.1 | mRNA | upstream | 49835 | 25830599 ~ 25854208 (+) | False | dicer1 |
| XM_034308118.1 | mRNA | upstream | 76008 | 25794575 ~ 25828035 (+) | True | clmn |
| XM_026926019.2 | mRNA | downstream | 302962 | 26213268 ~ 26218168 (+) | True | si:dkey-87k14.1 |
| XM_026926677.2 | mRNA | downstream | 396771 | 26307077 ~ 26312507 (+) | True | LOC113534080 |
| XM_026926895.2 | mRNA | downstream | 413093 | 26323399 ~ 26334056 (+) | True | galcb |
| XM_026926028.2 | mRNA | downstream | 424516 | 26334822 ~ 26348340 (+) | True | LOC113533735 |
| XM_026926029.2 | mRNA | downstream | 424516 | 26334822 ~ 26348340 (+) | False | LOC113533735 |
| TU202966 | other | upstream | 585782 | 25315560 ~ 25318261 (+) | False | samd4a |
| TU202922 | other | upstream | 727211 | 25176376 ~ 25176832 (+) | False | LOC117598238 |
| TU202767 | other | upstream | 896277 | 25003983 ~ 25007766 (+) | True | G171329 |
| TU202761 | other | upstream | 903994 | 24994493 ~ 25000049 (+) | False | cx28.6 |
| trnar-acg_3 | other | upstream | 1474381 | 24429590 ~ 24429662 (+) | True | trnar-acg_3 |
| trnat-ugu_12 | other | downstream | 1005052 | 26915358 ~ 26915430 (+) | True | trnat-ugu_12 |
| XR_003403449.2 | other | downstream | 1246037 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403450.2 | other | downstream | 1246037 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| XR_003403451.2 | other | downstream | 1246037 | 27156343 ~ 27465649 (+) | False | nrxn3a |
| trnak-uuu_7 | other | downstream | 1814901 | 27725207 ~ 27725279 (+) | True | trnak-uuu_7 |
