RNA id: XM_026926835.2


Basic Information

Item Value
RNA id XM_026926835.2
length 3505
RNA type mRNA
GC content 0.46
exon number 21
gene id LOC113534192
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24306999 ~ 24320497 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTTTGTGAGTTTGGAGTAGTACACTAAGACTGAGCAGTTTATGcaatagctttaaaaaaatgccatgGGTGAAAgagccgaaagagtcgactcctTATTGGTGAGTCGACACGATTGTTCTGACTCACCGAATCTCCGAAGCATCTGTTTAAACAGTAAACGATGAGGTCTGAGCAGGCTGCTGTagtggtttgggacgcagcctgAGTAAAAGACTTCCCAGTGTTACTCTGTTTCTTAGGAAACGGACTTGTAAAGTGAGCCAGAACTCAGAGGTAGTGACTGAACTACCAgcaaacacaccaaacacactgaGTGCCTTTAAATCGCAGCAGAGTTCAGCTGCAGGTTCTTGTTCACGCCATAAGAAGCTACAGAGGTTTGCGGATGCGCCTCGTTACAAGCGAATGCACGAGTAAGTGGAAACTTCAGCCAGAATGACTGCTTACAAGTCACGGAGCTGTGCCAGTGTCCAGCAGCTAGACCAGACAGAGTCCTGCTCTGAAGCAGCAGCTACACGCTTTAGTGCCTGGACACCTAGAACAAACAAACCTTCCAACCAGCAGCTTTTTCAGGAGAGAGCAACTCTTATTCTCCACTGGTTTGACCTATGGACGGACGGGCAGCGGAAACATTTGCTTCAGCTGTTGTTAAGAAGATGTTCCAAGTCCCAGCTCAAATCCATCAGTGACTACTTTATTAAAGCTGCTCCCATTGCACGACTGGACTTTACCACTGTGCTGCCGCGCGTACTCTCTTTGTACATCCTGTCCTTCCTGAGCCCTATGGACTTGAGTGCTGCAGCTCAGGTCTGCTGGTACTGGAGGTTCCTATCAGAGCAGGATTGCCTGTGGGCTCCAAAGTGTATTCGACAGGGTTGGTTCCTCACCTATGGAACATCTGACAACGAATATGGTGCCTGGAAGAAACACTATATTGCCTGTGCTTGCAACCTGGATTTTTTGTCCCCACGGGAAGCAGCGGACATCTATGGTACCCTGAACGAAACTTTGCCTGAAGCAGAAGAGGAGAAAGTGAAACGAACAGAATGTCTAATCAGACGAACCATCTGCGAGAAGATTGAGGAGCATAAAAAAGCTGATTTGAAGAGCAGGAGGGCATGGTTAACCAACTCAAAAGGAACATATGCAAGCAGTTTCAGACAGAAATCTAGCCTCCTACCTCTGAGTCGTACTACCAGTCTTGTCCAACTAGGGGATAAGTGCAGATTAGAATGCTTGTCCAGCATGAAGCTGCAGAGACCTCAGCTAAATTCGACCACTGAGACATCATGTGCTACCAGCTTAGCAATGAGTTCAAACTTAAAATCTTTCATCGGCTCCATCAATCACTCTCCACCCcacctgctacttctgtcatcCAGACTTCCTGCTTATGAGatgGTGCTATGTGGAGCTCTGGTCAATGTTGTGCCATTGTTATATGACTACAGTGGAATGACTTTAGAggcgcttctctgtctggctgaGAGAGCTACGAAGGGCAGAGCGATACAGAGTATTGGCATCATAGCTGAAGGAAACGCTGAAGAGATTCATCTTATAGAAGGCCTGAGCATCACAGAGAAGACCATCTTAAATCCTCACGTGCGGGTGTTTTGGGAAAAGCTCTGTGGCTGGGTGGTACCTGCATCAGAAGCAGGGTCTCTCAACATTTTTGTGCCTCTGGCTGCTTCTGTTGCAGGGGTGGCGCTAATAAGCAAACTGTCCACTCTGACTGGTTTGAACGTCAGTGCACCCACAGGAATCTGCACCGGCTCCTATCAGCACATTCTGAGTGAGTGGTTAGGGAATGGTGACTTCCCTCCGCTGCTGTACTTGAATGAAGGACCCTTGGTTTCATGGTGCAGGCAGGCAGAATGGATAGAGCAGACACTGCAGGTCCTACGGAAACAGCTAGAACCGCAGCTGCAGCGCCTGAGTTACGAAACAAGAGGCCGCACACTTGGTCTGTTCCTTTGGGATCATATAAACTTACCTGTTGTAAAGCTTAAATCAGAAGTTATGCAAGCTGTAATCGAGGGTCTTGTGGCACTtatgaaagaaaacacaGATAATCCTCTGGAGCTCCTGGGGAAATTCCTACTGAGGAAATGTGCGGATGGCACTGTGAAAAAATCTGAGATTTTAACAGAGAGCGCATCTTACAGCTCTAACCACAAGGTCCCAAAGAGTTCGTTAGGTGAAGCAGACCGGCGCAGTGGTGTGTTCATGGAGCTGCTGAACAGTGAGAAAGCTTACGTGCGTCTGCTACAGGCTGTACACAGCGTCTACTACATTCCACTACGAGCAGCTCTGGACTCCAACCGAGCTATAATTAGCTCTGCCAATCTTGTGATGCTCTTTAATCCCATGCTGGACATCCTGGAAGCcaataaTGTTTTCCTGCAGGACCTTACAGAGAGGTCGGAGGAATGGAATCCTCTGCAGTGTGTGGGCGACGTGTTTGTCCGATTCTGTGCCAAGCTACGGGCTTACACCAATTTCTTCAACAACTACCACACTGCTATCAGGACCATAGATAAGTGCAAAGAGATGCTTCCTGTATTTCGAGCCTTTATAAAGAGACACAACAGGACCCTTGCTACTAGGATGTTAAGTCTCCAGGAACTGTTTCTAAGTCCGTCCATAAGGGTGGAGGAGTATGTGACTTTGCTCCACTCTTTGATGCTACACACACCACCCGAACaccctgatcacacacacatatcttcTGCCTTAAACACATTATGGAATTATAGGAACTTTATCCACAAGctaaaaaaaagttcaaaccAGGAGGACAGAATGCTGGAAGTGCAGAAGATCATTCAGAGCTGCCCAAATCTGCAAGAGGGAGGCCGATATCTGATCACCATGCAGGATGTGGCATTACTGAGTTGCCTTAATGAAGACATTGCTCCATCACTCAGGATGTACGAGTGTATTAAGGAGCTGGGACTGTTTCTGTTTAACGATGTTGTGGTGCTgactgagaaaaaagagactcaTGTGCCATTCAGTTTGGCAGTGAACACATCTCACACATTCCTGGCCTCTGTAAGCTTGCACAGCCTCAGTGTCTCAGACACAGTGGACACAAAGTACGTGCAGAATTCCTTCCTCCTGGAGAGCCCAAATCGCAGGTGGATCTGTGccacagacagagaggaggatAAGATCAGGTGGCTGTGTGCTTTAAGCAGTGCTATAAATGCAGCGAAACACAATTAAAGCAGCCATAAGTCTATAATGCTCATCTAGCCAAGAACATCAAGGACAACATCTTGAGCAAGAACATCTCCATCTTGGAAATATTCCCAGCCTGAATATTCCAAAAAAGCAGTAGTCTGTGGTGCCAACAAGGATTCAGTGGCTTTAACAGTTAAATATATTCTGTTGTGTTCAAGACAAAGTGAAACatattgtttttgtgttgtttaaatgttcttacataccaaaaaaaaaaaaaaaaaaaagctgtgcagttgatatgatatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202417 lncRNA downstream 22598 24284009 ~ 24284401 (-) True G171056
TU202385 lncRNA downstream 58984 24247685 ~ 24248015 (-) True G171028
TU202284 lncRNA downstream 272101 24034508 ~ 24034898 (-) True G170936
TU202233 lncRNA downstream 308288 23995566 ~ 23998711 (-) True G170887
TU202202 lncRNA downstream 387976 23918425 ~ 23919023 (-) True G170866
TU202554 lncRNA upstream 98434 24418931 ~ 24494790 (-) True G171160
TU202581 lncRNA upstream 147726 24468223 ~ 24469486 (-) True G171175
TU202589 lncRNA upstream 194412 24514909 ~ 24543974 (-) False luzp1
TU202594 lncRNA upstream 207830 24528327 ~ 24528696 (-) True G171184
TU202651 lncRNA upstream 277778 24598275 ~ 24655253 (-) True G171232
XM_034308286.1 mRNA downstream 15034 24286842 ~ 24291965 (-) True LOC117598332
XM_034308235.1 mRNA downstream 228260 24040745 ~ 24078739 (-) False prox1a
XM_034308234.1 mRNA downstream 228260 24040745 ~ 24078739 (-) False prox1a
XM_034308233.1 mRNA downstream 228260 24043617 ~ 24078739 (-) True prox1a
XM_026926229.2 mRNA downstream 278517 24003465 ~ 24028482 (-) True smyd2a
XM_026926567.2 mRNA upstream 6446 24326943 ~ 24331095 (-) True ccdc28a
XM_026926645.2 mRNA upstream 43505 24364002 ~ 24380106 (-) True tmem121aa
XM_034307756.1 mRNA upstream 70556 24391053 ~ 24401559 (-) False tedc1
XM_026925988.2 mRNA upstream 70556 24391053 ~ 24401558 (-) False tedc1
XM_034307755.1 mRNA upstream 70556 24391053 ~ 24401558 (-) True tedc1
TU201673 other downstream 1443232 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2191123 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 3489783 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 3573947 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3741200 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 480586 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 938342 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 938342 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1258442 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 3578994 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile