RNA id: XM_034308330.1


Basic Information

Item Value
RNA id XM_034308330.1
length 3013
RNA type mRNA
GC content 0.41
exon number 8
gene id zgc:162964
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 24295606 ~ 24307018 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTCTTTTTCTTCGTTCAGGGACAGAAACTCAGTTTGTgcgtgtgagtgtatgtgtatgtgtgtgtgtagtgttctTGGTCTCGGTGGGTTGCGCGTGACACGCCGACGGTGCGCCGGTGCCGCGTCATGGCTGCGCGAGAGCCTGAAGACGGATTAAGCAAAACTTCCAAGCGCACAATTCCTGGcgaaaatgaaagtgaaaatccACCTGAGAAAGATGAGGAGCAGAGCAAGTGGAGCGTCGAAAATAACTGGGGCTTCTCATTAGAGGGAATATTCGGACTTGCACTTAAATTTTTTAAAGACATGAATGGCAAGGCTTTCAATCCAACATATGAAGAAAACCTGCTGTTTGTTGCACTTCAGAAACAAATCTTCTTTGGTCCTTATAATCCAAAGGTTTGCCCTGAGGTTGGGTTCTTTGATGTCCTGGGGAATGACAGaagGAAAAAATGGGCAGAGCTGGGCAGCATTGCTAAAGAGGATGCCATGGAGGACTTTGTGAAGCTTCTGAATTCCTGCTGTAGTCTGTTTTCTCCATATGTCACGTCTCATAAGATCGAGAAGGAGGAACTTGAGAGGAGATTaagagaggaagaggagcgaCATcagcaagaagaagaacagcgtttggaagaggagaagaggagacaGGAGGCTGATCGCTTACTAAGCAACCAGCAGAAgcAACAGGTTATGGTTGctctgaatgcacacacaccagtgcAGTTCCAGCAGAATGCAGAAGCACAGTCCTCCAAAAGGTCAGAACAGCAACTGCTACTCATCCAACAGCCTCAAGAGCAACATTATCAGGAGTGTATTCAGCAGGCCCACCATACACACCAGGGCACAGCTGAAGCCCCATCACCAGATTCAAATGACATGGCTTCAGGTACAAatcccatcagccaatcagagtcaTCACAgaggaaaacagctgaagcaaACCCCAAACAATGTCATTTATTCGTAGAAAGCAAATCAGGAGAACTGCCCATCATGGCGCCCTCCATGTGGACGATGCCTCAGGTAAACGAATTTAAGGAGAGGACGCAGCAGGATGCAGAGTCTGTGATCACTGTTGGGAGAGGCGAAGTGCTAACCGTGCACATCCCCACTCATGATGATGGCTCTACATTCTTCTGGGAATTTGCCACCGATTACTACGACATTGCCTTTGGCTTATACTTTGAGTGGCCGAACACAGTAAATGGTGTGAGAACTGAGAAGTTTGCAGAGTCTGTATCTGAAAACCAAGAGGGAGGCCAGGCTGAAGAGGCGAATCGAAAGTCCGAGAAGAAAACCAGAAACGAAGTCCCTCGGGTTAGCGTGGTGGTTCCACTCTTTCGGCGGGACAGCCATGAGAATGTGTATGCAGGCAGTCACCAATACCCAAGCCAAGGAGTTTACTTGCTCAGATTTGACAATTCCTATTCGCTCTGGAGGTCAAAGGTTGTGTATTACAGAGTCTACTACACCAGTTAGATTTATTAGAGACACACAAAGCCTGAGCTCTAAACTCCTCACACACATGAATTTCTCATTTAAATAGTTACTAATAGGTTTCCAAACAAGTTAAAAAGgtcacacaaacactacagtATGTGCAGATTGGCTTAATCTGTGCTTatctttttaatgaaaagaGGGTGAGAGGAAGGCTTGGGCCAAAGTTCTGAGCTGCTTTGTTTACTAGAGGCTAAACAGATCCTGCTGTGCAATTCTGAAATactattaaatgtttaagtaaTTATGGAGGTAAAAATACTCAGGTTTCTTTATTAGGTTTGTGTTGAGCTCTAAAGAAATCCAGTGCAGTAGAAGACCAGCTCAAAGGCCAATacataaaaatgtgcaaatcCAATCAACAGTCTTCTCACTTGGAGTAAAATGGAGTAACAACAAGCTATAAAATTGTGGAATGCATTCTCACAAAAGCTTAATTCCCCAACCTATACCAAATTATTACTGCCTTGGATGTAGAGTTGTGTcatattatttccatttttaataatggacttCATGGTCACAGTTTGGGaatttttttccaccaaatcctgattgatacttttccagaacgtTGTCTTGACAGCTCCTTGgacttcatgatgctgtttgtttaggtttgtttaggtatgttctctaacaatcCCTGGGGCCTTCCAAGAACAGGTGAATTTATActgtgatcatgtgacactttactCGTGCACAGCTGAACTCCATTCAGCTTAATTATGTAAGTTGAATGGAGTTTACCTATGTACGagtaaagtgtcacatgattgcaccagaactaatttaggggtttcatagcaacaggggtgaatacttacacaATCACTACTTCTGCATTcttatttgtaaaaatttggcaaactatattgattttctgCCCGCTTCAATATGATAGACTATGGacttgtgtagattcatgacatataatcacAATGAAGGCAATGTCAGTTCCAGctgaaacactacaaaatgtcgAAAAGTTcagaggggtgaatacttatgcaatgcaCAGTATCTCATTGGGGGACAATTATAGTTATTTTCGTCCTACCTACTGTAACTGCAGTAGTCCTTTCCTTATactgtttacattaatattaacagaaTGACATGACCAACTGCAATGACAACAGATTTCTCAACAGCAttccttaaaaaatatatatatatatatatttttttttacatgtacagGTTATTGACCTGTAATTATTGTTTCCATTTTAAGTGTTCCTCTGAAGAAATGCTGTCAAACAAATGAAATTTGTTGTACTTTAATGTTTGtcaattatttattatgattacTTTTAATGGTTAAAAGCTGCAAAGTGTGATTTTGTAAAACTCTAACAGAGCAAAGGATTTAAGTGTTCAAATGTAATATATCGATGACTATCTGTAGGATTTGTATTGTAAATAAATCTTACTGGTTAGTGGTTATCAGTATACATCCTCTATGTGTTGAaataaatcatatcatatcaactgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202251 lncRNA upstream 259435 24035784 ~ 24036171 (+) True G170904
XR_004578986.1 lncRNA upstream 261544 24028325 ~ 24034062 (+) True LOC117598313
TU202239 lncRNA upstream 284257 24010349 ~ 24011349 (+) True G170893
TU202008 lncRNA upstream 466420 23827063 ~ 23829186 (+) True G170718
TU202006 lncRNA upstream 513517 23779323 ~ 23782089 (+) True G170716
TU202374 lncRNA downstream 836 24307854 ~ 24308329 (+) True G171017
TU202376 lncRNA downstream 2612 24309630 ~ 24309966 (+) True G171019
TU202378 lncRNA downstream 10516 24317534 ~ 24318066 (+) True G171021
TU202527 lncRNA downstream 138585 24445603 ~ 24450067 (+) True G171135
TU202508 lncRNA downstream 172883 24479901 ~ 24482854 (+) False kdm1a
XM_026926524.2 mRNA upstream 12983 24252861 ~ 24282623 (+) True xdh
XM_034308243.1 mRNA upstream 12983 24252920 ~ 24282623 (+) False xdh
XM_026925957.2 mRNA upstream 48716 24238657 ~ 24246890 (+) False dnajc27
XM_026925956.2 mRNA upstream 48716 24238670 ~ 24246890 (+) True dnajc27
XM_026926612.2 mRNA upstream 60481 24233358 ~ 24235125 (+) True pomca
XM_026926574.2 mRNA downstream 26507 24333525 ~ 24346184 (+) False LOC113534014
XM_026926573.2 mRNA downstream 26537 24333555 ~ 24346184 (+) True LOC113534014
XM_026926470.2 mRNA downstream 40084 24347102 ~ 24358534 (+) True rin3
XM_034308328.1 mRNA downstream 54801 24361819 ~ 24363880 (+) True pth2
XM_026926913.2 mRNA downstream 105953 24412971 ~ 24418924 (+) True cdk1
trnay-aua other upstream 330500 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_11 other upstream 330687 23964848 ~ 23964919 (+) True trnah-gug_11
trnah-gug_10 other upstream 333551 23961984 ~ 23962055 (+) True trnah-gug_10
XR_004578925.1 other upstream 1273211 22861810 ~ 23022395 (+) False LOC113533992
trnah-gug_12 other downstream 119751 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 119937 24426955 ~ 24427027 (+) True trnar-acg_2
trnae-uuc_2 other downstream 121162 24428180 ~ 24428251 (+) True trnae-uuc_2
trnah-gug_13 other downstream 122386 24429404 ~ 24429475 (+) True trnah-gug_13
trnar-acg_3 other downstream 122572 24429590 ~ 24429662 (+) True trnar-acg_3

Expression Profile