RNA id: XM_026926850.2


Basic Information

Item Value
RNA id XM_026926850.2
length 5297
RNA type mRNA
GC content 0.42
exon number 7
gene id esrrga
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23428300 ~ 23495384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCCTCGCTTCATATTCATGAGCACCAATCGTGGCTTTAAGTCCTTGATTAGAAGAGTGCAAGAGCTTTTGGTCCCAACTGGCTGTGCCTATAGGCTTGTCACTGGGAGAACGCTTCCTGTTAATTGCACTGCTCAAGTGACGGGACGgcaagaggaggaggagagagagagagagagagagagagggacaaatAGAGAGaggcaaaaaagagagagagacagagacagagaaagagagaaacttTGATTTAGAGAAGCGCTTGCTCAAATGATGGTCACTGAGTGCAAATGGATTCAGTAGAACTTTCAATGCCTGAGTGTTTCTCGCTGCACTCTGAACAAGACAGGCTGCTTTGCAGAATGTCCAGTAAGGACCGCCACATTGAGTCCAACTGCCCCTCATACATCAAGACGGAACCCTCTAGCCCAGCCTCGCTGACCGACAGTGTCAACCACCACAGCCCCGGCGGCTCATCAGACGCCAGCGGCAGCTACAGTTCTGCAATGAACGGCCACCAGAACGGCTTAGACTCGCCCACGCTGTATGGCCCGGGAGGCACGCTCGGCCCCAACGGCACCAGCGCTAAGCGCTACGAAGACTGCTCCAGCACCATCGGCGAGGATTCACAGATCAAGTGTGAATACATGCTCAACTCCATGCCCAAGCGCCTGTGCCTGGTGTGCGGCGACATTGCGTCAGGTTACCACTATGGTGTGGCCTCATGCGAAGCCTGCAAGGCCTTCTTCAAGAGAACCATTCAAGGCAATATTGAGTACAGCTGTCCCGCCACCAACGAATGTGAGATCACCAAGCGCAGACGGAAGTCCTGCCAAGCATGTCGCTTTATGAAGTGTCTGACCGTCGGAATGATGAGGGAAGgAGTGCGGCTGGACAGAGTGCGCGGCGGCAGACAGAAATACAAACGTCGGATAGATGCAGAGAACAGTCCCTATCTGAACCCACAGCTGGCTCTGCCACCCAAAAAGCCATTCCCCTTTGGCTGCCTTGCAGATAATAAGATCGTGTCACACTTGCTGGTGGCCGAGCCTGAGAAGATCTATGCCATGCCGGACCCGACTGTGCCCGACAGTGACATCAAGGCTTTGACCACGCTGTGTGACCTGGCAGACCGAGAACTGGTGGTCAATATCGGCTGGGCCAAGCACATCCCAGGCTTCTCCACGCTGTCGCTGGCTGATCAGATGAGTCTTCTGCAGAGTGCGTGGATGGAGATCCTGATCCTGCGTGTGGTCTACCGGTCACTGTCATTCGAGGACAAGCTGGTATACGCTGAGGACTACATCATGGACGAGGACCAGTCCAAGCTGGCTGGCCTGCTAGACCTGAACAATGCCATCCTGCAACTGGTGAAGAAGTACAAGACCATGAAGCTGGAGAAAGAGGAGTTTGTGACTCTGAAAGCTATAGCGCTTGCAAATTCAGACTCCATGCACATAGAGGACGTGGAGGCGGTGCAGAAGTTGCAGGATGTGCTGCACGAGGCGCTGCAGGACTACGAGAGCAGCCAGCACACTGAGGACCCCCGTCGCGCCGGAAAGCTGCTTATGACGCTGCCTCTGCTGCGCCAGACATCCACTAAAGCCGTGCAGCACTTCTACAGCATCAAACAGGACGGCAAGGTGCCCATGCACAAACTCTTCCTGGAGCTGCTTGAGGCCAAGGTCTAGCTCGGCCACCGTTGCCTAGACCGGTTCTGCTGGGCATACACACGAGCGCTCTCACTACACTGGGCAGGCTATGACTGATATACCGTTTGCGAAACTTTTCTCCATAAACGACGGTATCTAATAATGACAAGCAACTTAACCTTAACGATACTCCGAACTGTTGACTTTATGCTAGATGCATAAATGAACCAATAAAGTATGgttgttgaggaaaaaaaacatgctgaataggacaaaaaaaaagacttccacTATTTAGCAGCAGGACTTTGAACCAGCTTTTGACTTGTTCTTCTCTGAAAACCAGTGCAGTTTTTAGAGCTTTCGAAGaacattttgttgattttcaCCTAAAAAAGGAACCTGGATCCAAGAATGACAAACCCTGCCAAAGGAAGGAGTTCCACTGAGTGGGATGCCAATGAAACTGTAATGTCCCAAACCCACGTCCAATAGTCCCTCTTTAACAACCGGCCACAACCTAACAGCAGGCAGTAGTGTTACCACCTGACCTCACAACAGCAGTTTGACAGCGCATTCGCCAAACagagattttgtttgtttgtttgtttgtttgtttgtttgttggtttacttctggcttcttttttttttccccatctgaaGAAGCTGCTCCTAATATTCATTTAAACCACGAGCAGTCACTGGGGCTTGATTCCCTTCTTCTTTCCTTTCGAGTCTTCCAGACACTTCTAGCCACTTTTAATGATTTCACCATTATCTTTTCAGGGAATATCCTGAGCATTAGTCTCTCATGCAATACAAAACAGAGGTACTGTAGTGGACAAGGAATagactaatttatttattgatattttactGTGCTTTATCTCAGTGCATTTATACTGAAGGGTGTAAATATGTAGTATGGACGTCATTCTAGCATTTGATCACATGTTGATAAttgaacaggttttttttttctaccaacTCTAacactttcagtaactgttaCGAGTCGGGAGAGAATGCTTGCTATCTTCTCTAAGCAATAGAGGTTTTAAAAGGAGTGTAAATTTATGCAATTTCTGTTCGTGCCCGTGTTTTTTGGAAACGAGATTTCTTGCAGCTTTAACTTTCCTTTATGTGGTTGATACAGTATGATATTTGACCGATATGGTGGCCAGAAGGACCATGAACATTAACTCAACACAATGATATATGCATTTCTATTACCACCAAACTTACTTTTACTGATATCATTTTATCAAAGCAGTATATTAGCACTTAGGAAGAACATCATTGTAGCTCTAGTTTCATGTGGTTCATACCGAACAGCCCATGATATCATGATGTAATCTTCAGTATGGAAATTTTCTTTAGCTGAGGTCAAGTAACTAAGCAAGCTATCCACTACACCCATCAGAAATATGTCAGTATTAGTAGGTCTATGGGGGTATTTTCCTGAATATTCTTTAACATTGTATATTGTAAATGGACAGATTATAAAACTAACCCGAGACATTTTATTGgaacaaaattgaaaaaaaaaaaaggaaaaaaaaagttcagcttCTACGTGTTCCATGCCTGCTGTACTTTTTCCTAAActgcttctttcttttcttcctttttcttatGCTCCATGCGATGAGATGATGTGGTTGTATTCTTCTCCTGGTGATTCCACTTTTTTGTGTGCCgtccactctttttttttttttaaaagacaggGTAGAAACAGAGACACTACTGGATGTATGAATCCTCAGGAGACATGGATGATGGGTTTCAAATAACTTTCTGGCATAAAGAACTCTTGCGAAGTTACTGCTAGATCAACAGTTTCATGATCAATGTAATCTATACTGATGTATAAGTGATTAACAGTTATTTAAAGGAAGGAgcaacatatatttaaaaagggATCATTTTATCTAACTACTTTCCTGTAGACTAACACTGTATATCTTaggttaaaatgaaaaaaaaaatgcttttgagTATCTCAAAATgatagtggattttttttaattattattattatttcatttttttaacacgCTGCTGTACATAAGGCCTTCCATGCTGAGCGAATCTTGTAATATTATCTTTAAATCCTTGAGGCTGCAAAGGAAAGAAATGTTATGTTTTGGTGTAGGATCCAGTTTCTAACACTCTCGCTTCAACTTTGTGtgctaattaaaaatgaagagaaaaggactttaaaaaaaaaacatcattctTGGAATAAAACAGGGAtaagggttttattttttctcccttCTGTGTTCTTTAAATACTGTGTAATAATTGTCATTAGCTATACAAAATCTATCATTTAGACTGTGCTTTGGAGAGTGTAAAGTTATTCTGGACATTAATCATGGCTACTTGTTGGATGGTCAAAAACTGGAGGGTTCGTGCTGTTGATGGGAAGTTggcactttctttcttttttccttacaCAGTTCATGGCAGAAAGGTGCggtttcttcctttcttcctgatttttctttcctcttgtcTGTTACATTTTGTCTTTCTTATGACTATGGTACAGAACACCATGCAAAcatgaagatatttttaagtgatttaagCAGAGCTTTCATTTTTATACTGTCACACAGATGTTACAGCAAGCAGTCCTGGGCCTGGGTGTGTTATAGGAGCTGACTTGGGATCAGCCGTCCCTCTCTATAAATTCAAGACAAAACTGACCCACTTTGAGAAGTCTGACTCACCGTTAAAGGCTGAGGTGCACTGAGTCCTGAGTATTTCCTTTTGTTACACGAAGCATTCGCACAAAAATATGGATTCTTCCAAAAATAGCATTTTCTGAACTCCTTTAGTGATACTCACTGCATAACTTTGAACACTATAGTCCCAAGGTTAACTTAGATCATTAAGAGAAGGCTCTATTTGCTCTATTTGCTCTGTCGGTTTCAACATATTAGAGtagagaaatgaaaatgtaaattacCAACGATACATTTTTCCaacatattttcttatttaaagcAATATGTGTGGCAATCAGGAGCCACACTCTGCAACTGACTTAGATCaaaaatgctgtatttattgGACTATTTTGCAATGTAAGAAataatagggggaaaaaaatagatgaTGTACAAACAActgctattttttattatagagGACCTTATGGGCATGGGTTGTATTTATTCTCGTCTGCGAAATGTATCGAAGGATTTTTGCAGCAGTCAAACATGCAAAATGGAAGAAACACTAATCAACAGGAAGAACTGGAGGAAGAAGGGAGGAGGGGGGTATTTAaaacaaacgaaaaaaaaaaaaacctatatgATCAATAAGATGATATCAATTTCAGTCCAGGAGTTGCTGAAACAGCCTGTAGTGAGAACCATGTCTGTAGCTCTAGATGTGCTCAACATCAGTGAAACAATTACTTGTATATTTTTGTGATGTGTACCATACAGTGTGCTCCAACAATTCTGTCcatttgtgtaaatgtatttattttacattgtatATATTGTTCAATGCAAAAAGAGAGACCTATGATTCTGTAACTACGATCAATTCAGATGTGTAACTCCAATTATGCCTTTCAGGATAATGGTAGAGCAATATTAAAACATGCTTCCAGTTTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201871 lncRNA upstream 52864 23375238 ~ 23375438 (+) True G170610
TU201829 lncRNA upstream 278218 23149542 ~ 23150084 (+) True G170568
TU201828 lncRNA upstream 278797 23148674 ~ 23149505 (+) True G170567
TU201724 lncRNA upstream 408850 23006024 ~ 23019452 (+) True G170484
TU201722 lncRNA upstream 424471 23003595 ~ 23003831 (+) True G170482
TU202007 lncRNA downstream 282885 23778269 ~ 23779227 (+) True G170717
TU202006 lncRNA downstream 283939 23779323 ~ 23782089 (+) True G170716
TU202008 lncRNA downstream 331679 23827063 ~ 23829186 (+) True G170718
TU202239 lncRNA downstream 514965 24010349 ~ 24011349 (+) True G170893
XR_004578986.1 lncRNA downstream 532941 24028325 ~ 24034062 (+) True LOC117598313
XM_026926402.2 mRNA upstream 320353 23067560 ~ 23107949 (+) True itsn2b
XM_026926267.2 mRNA upstream 375628 23024657 ~ 23052674 (+) True mpp5a
XM_034307814.1 mRNA upstream 377461 23024656 ~ 23050841 (+) False mpp5a
XM_034308039.1 mRNA downstream 14817 23510201 ~ 23719967 (+) True ush2a
XM_026926912.2 mRNA downstream 273608 23768992 ~ 23777316 (+) True c10h14orf28
XM_026926805.2 mRNA downstream 302158 23797542 ~ 23820314 (+) True LOC113534170
XM_034308066.1 mRNA downstream 325462 23820846 ~ 23864133 (+) True fancm
XM_034308067.1 mRNA downstream 325462 23820846 ~ 23864133 (+) False fancm
XR_004578924.1 other upstream 405907 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other upstream 405907 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other upstream 537532 22862027 ~ 22890770 (+) True LOC113533992
TU200872 other upstream 1608243 21819281 ~ 21820059 (+) True G169692
TU200725 other upstream 1753841 21669907 ~ 21674461 (+) True G169577
trnah-gug_10 other downstream 466600 23961984 ~ 23962055 (+) True trnah-gug_10
trnah-gug_11 other downstream 469464 23964848 ~ 23964919 (+) True trnah-gug_11
trnay-aua other downstream 469650 23965034 ~ 23965106 (+) True trnay-aua
trnah-gug_12 other downstream 931385 24426769 ~ 24426840 (+) True trnah-gug_12
trnar-acg_2 other downstream 931571 24426955 ~ 24427027 (+) True trnar-acg_2

Expression Profile