RNA id: XM_026926884.2


Basic Information

Item Value
RNA id XM_026926884.2
length 3472
RNA type mRNA
GC content 0.47
exon number 19
gene id txndc16
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25182416 ~ 25206473 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTTTGGGATACAGCCTCTGTTTCAGGAAGTAACAGTGGATCCCATATTACAGGCTGGAGGATTTTATACTTTTTAGCTATATTTATCTACAGTAAAAGGCTgatgtgaaatattttttgcaatgcttataattttaaaaatgttttccaaGAAGAGGAAGATTTTGGATGAATTCGGAAACTAGTCACGTTTGAATGACGTGTAAAATAGTGATGTAGGAATGCACCACACTGGGATCATGAagactttgtgtgttttgtgtgtgtttgtgctgtgttttgtgTCAGAGCAATGCACTTGTGGAAATCCTGCAAAGCTGCTGCAGCTCACTGCTCAGGGCTTTAAAGAGCACGTGCAGTCCGGAAAAACAGCTCTCATTTACTTTGGCAAATATGCTGATTCAGCCATTCAGACGTTTATAGAGCAGTTAGAGACGTCCGCTGTGGCGTTGGAGGACTATGGCATATTGGTGGCGATGGTGAACTGCTCCAAAGAAAATGTCGCAGAATACTGCACAGAGGAAGAAGTGATGCGGAAAGCATATTTATTCAGAGGCGCAGATGTCTTGAGAAGTTTCGAGATTGACACCATTTTTGACGTCAACGCCATCGTGTCCCACATGCTATTCACGGTGCTCTTCAACGAGGTTCGATACATTCACACTCCAGCTGAGTTGGTCGGCGTTGAAAGAGTGGCGAGGGGAAAGACGGACATTGTGATGGGTCACATACCTGCACTCGGGCTTCCAGAGCACCGGGCTTTAATGGAGGCGGCGTTTGTTTACGGAGGAAAGTACCAGTTTGTGCAGACCACCGGCGCTCCTCTTCTCAAACACATGGGGATTGCTGATGTGTCCTCTGTCCAGGCGCGTCTCTGGTTCCTCCACTGCAACAGTGTGTCTCACGCGTCTGAACCGTGTCCTCACACACTTATGAAAAAGCCACTGAGCACCATCAACATACACACCTTCCTTCAGCTGATGGAGGCACCAGTCCTGATGGAGGCAGATGTTGATCCTGATGACGTGGATGTGATCTATAATCACTTGAACGTGCCTGTGCTGTTCCTGTTCGCTCAGACTGAGACACTGCACATGGATCGCAGCACGGCTGAGGCTTTGGCCTGGAGGCTGCGAGGAGAGATTGGCCTCGTCCTAATCCACAGGGACAGTCCCAGGGTGAAAACTCCGGTCAGATATAATGCTGCATATCGACTCCCACACAAGgaagtgaagtaTTTTACTTTGAAGAATGTTGAAGAAGTCGTTAACCTTATTCGGGGGCAACTATTTCAAgaggagaaggaagaagaagaggaggatgacGAGGATGAGGATCACTGGGCTTCTACAGATGTTTTGGATGATGAGGTGGCGGAGTCGGTGTACAGAGACCGCGGTGTAATGCTGGACATGGAGTCTGTCTCAGAACTCACAGCTGACACTTTCAGCACTGCAGTAGCTCAGAGCGACCTCACGGTGGTGCTGTTCTACTTTAAATGGGACGCTGTGTCCATGGCTTTTCTGCAGTCGTACGTCGAGGTTGCTGATGCACTTGAAGGTGTGAGTGATATCACACTGGCCTCCATAGACTGTGGCGagtggacgtgtgtgtgtcgTGATCAGAATGTCTCCTCTTTCCCTTCCGTTCTGCTGTTCCGTCTGGGTGAGGACACTCAGTCCTACAGAGGCATGATGGGAACTGAGAGCCTGTATAGATTCATCCTGCTGAGTCATCTCTCCATCCcgctctctctgtcctcctcgGATGAAGTCCTGTCCTTCCTGGAAGGAGATCTGTATAACAGACACTCTTCTTTCTCGCCCATCCGAGTGCTCGGTCTTTTCACACCTGAAGATCCGGATGTGGCCATTTTTGAGGAAGCAGCGAAATATCTAAGGGGAGAAATGATTCTGGGGCTGTTTGAGCACATGGAGGCAGAGAGATGggctCAGGAGCATGCTGTGATGCTGCCTGCTCTCCTGGTGTCTCATGGCCCTGGAGTTCAGAGAAAAGCTCATTCCCTTCTTTTGTCCACGTTACAGGAGATGATCTCGCACATCAGGAGAGTGGCACTTGATACATTTCCTGAACTGACAGTCGAGAACCTGCCATGGTATTTGGAGCTCAGGAAGCCTTTGCTGATAATGTTTGTTGGGGGAGAAGAAAGTCCAGAGACTTTGCAATCTCTTGAGGAGATGAAGAAGGCTGAGAGAACGGGACAGCTGGACTCGTCACTGCCATGCTGGATCCATCTgggtcGCACTCCTGCTGGACGGGCCGTCTTAGAGACCTATCTTAGCTATGTTCCTCCACTCCCTGCTTTGGTGCTCTCACAGCTGAGCTCAGGTGGAGAGGTGTATCACTTCCCCACAGAGCGCCCTCTGCtgtctgaaaacatcattcagtggCTGCAGTGGATAGAAAACAACCAGGAGCAGGCTGCAGAGCCAGAATCCAATATAAGCACAGAGCTCTTAAAGGAGCTGGCAATGACGCTATTGCTGCAAGACCACAGAGTGGCCAGAAATGAGTGCAAGataagctacacacacacacacacacacacacaaatgcatacaGTCCAGTTTATAGCAGAGATCCATGACATTTCAAAATGACCTTAAAGCCAGGTAAACCCTTAATAGACCAGCTGTCTTTGATTgaccttctttctttttgtttaacttGAGCACTGGACGTTCCTTTCACTCAGACCTGGTGCCATCTGTCACACATGTTCCAGAAGGTTAAGCCATAATCCCTCTTGCTCTTGTTTGATGAGCATGAGCATATCAGAAACAGCTTGCAGCAATGAAACTCATGGAAACTTGTTTTAATTTCCCATCTCCTTAAATCTAGTGGAATTTAAGTAACAGCCCTTTCTGGTCTATTGGCTCTCATGCTCTCCTTGCATATTTACGTGTTTCATAGGCAATTTGGTTGCAGATATTCGATTTGTATCTGTCTGAACATTTTCCAGTAGTGCCACGGAGCACGTTGACCTTGCTGGCATAATCTTACTCCTGCCGGCTTGTGGTTAGTTCCCAGCAATGAGATTTTTGGCTTCATGAGCTTGGCAGGAATTGAGATGAGACCAGGTTGCTTTTAGGTAATTTCTTTACCAGGTTGACTGGAACTCTGCTCAAGACGTGTTTTCTGAACAATGCAGTCGGAAAGACAGCATTAACCTTTCACTTGGAGTGTATTAAAGGAGCAGAACTGGCCAAAAATTTCTCCAAACATAGGCAGTGAGTCTGGTGTGTTTGGTGTGCAAAGTCTGCttatttagttttgcactggagcttcAAGACTAATGAAGCTAACAAGTAAGGAAAGCTCCCAGCTTAGCATGCTTCAAAATGTATATCCATCTCATTATAAACAGCTTTGTCTAGACTTACATTATTTCTGACAATGTATGACACGTGGTTATGTatgaaaatggacaaaaggaTGCTGCAGAATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202841 lncRNA downstream 174658 25008099 ~ 25009389 (-) True G171381
TU202682 lncRNA downstream 257823 24856891 ~ 24926224 (-) False G171256
TU202679 lncRNA downstream 282007 24827641 ~ 24902040 (-) False G171256
TU203040 lncRNA upstream 55135 25261608 ~ 25262527 (-) True G171542
TU203043 lncRNA upstream 57895 25264368 ~ 25265970 (-) True G171545
TU203041 lncRNA upstream 61429 25267902 ~ 25271762 (-) True G171543
TU203078 lncRNA upstream 79569 25286042 ~ 25286781 (-) True G171572
TU203076 lncRNA upstream 80679 25287152 ~ 25289502 (-) True G171570
XM_034307982.1 mRNA downstream 77288 25056364 ~ 25106759 (-) False nid2a
XM_026926785.2 mRNA upstream 33613 25240086 ~ 25252303 (-) True ero1a
XM_026925989.2 mRNA upstream 114037 25320510 ~ 25335259 (-) False gch1
XM_026925990.2 mRNA upstream 114037 25320510 ~ 25335257 (-) True gch1
XM_026926034.2 mRNA upstream 130073 25336546 ~ 25361861 (-) True wdhd1
XM_026926036.2 mRNA upstream 130073 25336546 ~ 25361859 (-) False wdhd1
TU202681 other downstream 376952 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2320280 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 3068171 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 4366831 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 4450995 20732930 ~ 20733052 (-) True LOC113530231
TU203072 other upstream 52366 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 52366 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 372466 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2693018 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2693018 27899491 ~ 27910890 (-) False si:ch73-204p21.2

Expression Profile