RNA id: XR_004578946.1


Basic Information

Item Value
RNA id XR_004578946.1
length 1872
RNA type misc_RNA
GC content 0.46
exon number 12
gene id zfyve19
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19879735 ~ 19886509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGTTTTCTTATTTGACAAATGGGAGTGTAGTTGAATCTGGTGTTTGTGCAGCACcagttttttcttcattaaacatTGAAATTGATTTTGCCAATAAATTAAGTTTTGTATTCCCAGTTATATAGATCATGCCGTAAAAAGTGTTTCAGACCTCGTTGGTCTGGAATCGTCTGTTGTGTTGAATATCGCCTATAGGATTGACTATAATTGCAGCAGTCCCAGTGGAAGGCCAACTATGGATAAGCGGTGCTATGGCTGTGCTTCAAAGTTCACTCTTTTCAAAAAAGAGTTGGGCTGCAAAAACTGTGGACGCTCATTTTGTTCAGGGTGTCTAACGTTTAGTGCGTTGGTGCCGCGCTACGGTAACACTCAGCAAAAAGTCTGCAAGCAGTGCCATGGCAATCTCACAAGTGGTGGAAAACAGAATGATGCTGCAAGATGGTCACCACCTGAAAACTACAAAAAGCGGGTTGCTGCCCTTGAAGCCAAACAGACTCAACCTCATCATCCTCCAAGACATGCTAGTGGAACGAATAATACATCAGCTCTCATTTCAACCAAGGGGCTTAGTAAGGAGGACCGAGCGATTGCACAACGACTCCAGAAGCTGAAAGAGGAAACAAAACCAAAATCCATACCATCTGAGAAGGAGATAGAGACTCGTCTTGCTGCACTGAAAGCTCCAGATCAGACAGTGCCTTCAGCTCGAGAGATGGAAGACCGTTTGGCTGCTTTACAAGGAAGACCTTCTCCTTCCCAAGCTCCTCCATCAGTTCACCAGCCACCTGATAGCAGGACTCAAACCGAACAGGCCAATGACTTAATCACGCAGATGACAGAGGAAGTTGCCATTGACAGACAACAATGTCCCGATGCTGATACCTCAGAGCATCCAGTCACATCCCTAAACGATCTCAACAAGGAAGCAGGCGGGACACTGGATGAGAATTTGGATGATGAGCAGCTGTCACTCAAGCAGATAGAGGAGGAAAAGAGCCGCTTGCTGGCTGAGGCCATGGAGGAGCTGAAACGAGAGGAAAACTGCCAGACGCAGCTTCTTCAGGTAGCCAAGAGACTGGCTGTGCTGCAGGGGCGAGACCCGGACAAAGtcactaTGACCGACTTCCAGCAACCTGACAGTGATGAAGAGACCGAGGAGGAAGCACTCGCCAGGATTCTGAAAAGGCTGTCGGAAGAGACTGCTTTAGATGAAGCCAGTGGTTATAACATCCCTCCAGAGCACAGTGGcccagaaaataaagaaaagtccAATTCCAATAAGAAGCAGattCCATCCCAGTCATCTAAAACAAAGCCTCCTGCTGTCTCTGTCAACTGGAGTGCCACACGTTATGAGgtggaagatgatgatgaggaagatgagcTGCCCTGGTGCTGTATCTGTAATCAGGATGCCACCATTCGGTGCCACACATGTGACCAGGACCTGTACTGCAGCCGCTGCTTCAGGGAAGGCCATGATGAATATGATCGAAAAGAACACCGCACATCCAGTTACACAGCCCCtaagaaaagcaagaagaagaaaggatcCTCAAAGTGCAGCTAAAATGTGTCACTACCAATCCGAATGTGTCAGTACAGCtaataaattcatttcaaaGGTCGCAATGCATCAGGAGCCTTTCCTGGAAGCACTGAGGCAAGCACGAGACCATCCATTTCACATAAGCATAGACAGTGAACCCTAACCACAAGCACTGGTACActctgcaccaccatgctgccctaGTAATGTTTAGTATACACCTAAATGTAGGTTTGTGTGTTAAAGACTTTTTCCTAACTGAGCACTAAAATGAATTgagcaaattattatttaaataaaataaaattattggaaaacaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24778 ZFYVE19, ANCHR; abscission/NoCut checkpoint regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199473 lncRNA upstream 105069 19772890 ~ 19774666 (+) True G168504
TU199406 lncRNA upstream 116390 19722780 ~ 19763345 (+) False LOC113538915
TU199117 lncRNA upstream 192144 19682976 ~ 19687591 (+) False G168191
TU199143 lncRNA upstream 282768 19596423 ~ 19596967 (+) True G168207
TU199088 lncRNA upstream 354880 19523154 ~ 19524855 (+) True G168175
TU199571 lncRNA downstream 1418 19887927 ~ 19888154 (+) True G168585
TU199619 lncRNA downstream 101139 19987648 ~ 19987870 (+) True G168630
TU199621 lncRNA downstream 132252 20018761 ~ 20019038 (+) True G168632
TU199622 lncRNA downstream 132648 20019157 ~ 20020371 (+) True G168633
TU199623 lncRNA downstream 134125 20020634 ~ 20021068 (+) True G168634
XM_026934292.2 mRNA upstream 39888 19837258 ~ 19839847 (+) True LOC113538872
XM_026933767.2 mRNA upstream 70476 19778568 ~ 19809259 (+) True plcb2
XM_034308156.1 mRNA upstream 113154 19723910 ~ 19766581 (+) True LOC113538915
XM_026934352.2 mRNA upstream 113154 19723910 ~ 19766581 (+) False LOC113538915
XM_026934353.2 mRNA upstream 113154 19726463 ~ 19766581 (+) False LOC113538915
XM_034307819.1 mRNA downstream 26834 19913343 ~ 19922486 (+) False LOC113538658
XM_034307817.1 mRNA downstream 26834 19913343 ~ 19922486 (+) False LOC113538658
XM_034307818.1 mRNA downstream 26970 19913479 ~ 19922486 (+) False LOC113538658
XM_034307821.1 mRNA downstream 27124 19913633 ~ 19922486 (+) False LOC113538658
XM_034307820.1 mRNA downstream 27124 19913633 ~ 19922486 (+) False LOC113538658
TU199111 other upstream 192144 19674913 ~ 19687591 (+) True G168191
TU199113 other upstream 192144 19679315 ~ 19687591 (+) False G168191
XR_004578955.1 other upstream 1507764 18330468 ~ 18371971 (+) False ldah
XR_003403895.1 other upstream 1559659 18319970 ~ 18320076 (+) True LOC113539017
XR_004579004.1 other upstream 1953715 17925706 ~ 17926020 (+) True LOC117598336
XR_004578926.1 other downstream 27124 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other downstream 27124 19913633 ~ 19914709 (+) False LOC113538658
TU199644 other downstream 155968 20042477 ~ 20042935 (+) True G168650
XR_004578908.1 other downstream 635086 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other downstream 635086 20521595 ~ 20531222 (+) False LOC113530103

Expression Profile