RNA id: XM_026933739.2


Basic Information

Item Value
RNA id XM_026933739.2
length 814
RNA type mRNA
GC content 0.46
exon number 4
gene id siva1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20169130 ~ 20174078 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGACTTCGCGggaaaagagagatagaggttTGTTTGCGCTCCACGCAGGGTTAGCGGTTGTGTTTCAGCTGAAGAACATTTCGTTATTTTTTCCTTCAGAATGCCTAAAAGGTCCTGCCCTTTCACTGAATCGTTTTCGACACAGTATAAAATCCATGTTGGACAAAAGGAGCTGAACCTGCACGGAGTTTTGGGAAACAAATACAGACAGGAAGTTTACGAAAAGACCAAGAACCTGCTCTTCAATGGGACCCGAGCGGTAATGGGGCGAATTTGGAAGGTGGATGCAGCGGCGAAGTGCGCTGATGTGGATGTGTGTAATCAGGGTGATGTGACGCCTGCAAATAATCAGCTGCTACTCAAAGGACAGACTCTGATTGGGCTGGATGGGAAACTGAAGAAAGGCAAGGCAGTTTCAGGCAGTGTGACCGCTCCGGCTGTGTGTGCCGTGTGTCAGAGGTCATCAGGAGTGAGGACGGCGTGCTCTCAGTGCGATCGCCCTGCGTGTCCCTCCTGCACACAGCAGTGCAGCAGCTGTTCCAGCCGCTGCTGCTCCATCTGTACAGTCACAGATTACAGTGAGCGTTATGACAAAATCCTCTGCTGCAGCTGCTCTTCATGATGAGGTGGATGCAAAGATGGACTGGATCGATGGCTGAAGGAAAGGATAAAGTGTTTGTATTTTGCTTGTAATAAACTTTAGCGCATTCCACTCtaaatgaattttatataacttttaCACTTATATAATCGAgtttgtgtgtacatatgtattttttttaatcatttaaataaatacttgaaCAActcgt

Function

GO: NA

KEGG:

id description
K22744 SIVA1; apoptosis regulatory protein Siva

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199761 lncRNA downstream 17827 20150293 ~ 20151303 (-) True G168759
TU199760 lncRNA downstream 19228 20149490 ~ 20149902 (-) True G168758
TU199758 lncRNA downstream 20394 20145267 ~ 20148736 (-) True G168756
TU199752 lncRNA downstream 62272 20106213 ~ 20106858 (-) True G168750
TU199749 lncRNA downstream 68558 20099127 ~ 20100572 (-) True G168747
TU199899 lncRNA upstream 124463 20298541 ~ 20301554 (-) False LOC113529462
TU199937 lncRNA upstream 268919 20442997 ~ 20443772 (-) True G168908
TU200177 lncRNA upstream 364784 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 373567 20547645 ~ 20547877 (-) True G169109
TU200196 lncRNA upstream 390077 20564155 ~ 20564706 (-) True G169118
XM_026934181.2 mRNA downstream 42791 20065720 ~ 20126339 (-) True akt1
XM_034308017.1 mRNA downstream 110128 20027293 ~ 20059002 (-) False cep170b
XM_034308018.1 mRNA downstream 110128 20027293 ~ 20059002 (-) False cep170b
XM_034308019.1 mRNA downstream 110129 20027293 ~ 20059001 (-) False cep170b
XM_026933905.2 mRNA downstream 110129 20027293 ~ 20059001 (-) False cep170b
XM_026920002.2 mRNA upstream 28041 20202119 ~ 20212962 (-) True adss1
XM_034308000.1 mRNA upstream 45796 20219874 ~ 20255868 (-) False inf2
XM_026919032.2 mRNA upstream 45796 20219874 ~ 20255868 (-) False inf2
XM_026919030.2 mRNA upstream 45796 20219874 ~ 20255868 (-) False inf2
XM_034307999.1 mRNA upstream 45796 20219874 ~ 20255868 (-) True inf2
TU199706 other downstream 150436 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 574353 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1202517 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1321434 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1786675 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 148686 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 390851 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 558852 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 640483 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1941487 22115565 ~ 22115876 (-) True G170023

Expression Profile