RNA id: XM_026933767.2


Basic Information

Item Value
RNA id XM_026933767.2
length 5533
RNA type mRNA
GC content 0.44
exon number 32
gene id plcb2
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19778568 ~ 19809259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttaaaagcgctatacaaataaaataaaattgaattgaattgaatgtgaaTGTCAGAGGAAAGGTAAGTCCAGGTGCGTTTAGTTGGAGTGGAAAACTGTAATAATTCTGCATAACATTGCCTTTATGCCCATTCTCTGTATGGCGATAATTGTGAAGTTGACTATGCTAAGAATTCATGTAAGCTAAAGAAGTCTCTTTCTAGTGACCAACCTCCTTGtaaacacacatattatatatggcaataaacaaaaagaaaaagtgaacaAATGCATGTTTAATGTTCAGTACAGAGTTTGTAATATCAACCTTGCGCTTTCTAGaagcattttattcttttatagttagatttttaTAAGTAACTATGAAAAAGTATGAAATTAAGCAGCACTGAGCACTGTAAAGGCTTGAAAAGAataatatactttttaaatagaaaatttgCTAACTTTAAGCATTTAAACTAATAGTTCTGAGTTAGGAATGGCAGTAGCTTAGTGTGCCTGATGATGTTAGAGAGGTCGTCTCATACTAACACCTGCCTCCATGATTTACATATGTTATTGTTGGGCTTTTGGACATTTGACTATTATCCAAACTACTCTGTAGAAAGACGATTTAGCCATTTTTTCCTCCCTTTTAGTTCTAATGTATCATTATTCAACTGCAATCTTACttacttatatttttattttacgcCTACAAAAGACTTGGATTTATTTGGCACTACAGAAGTCGGTTTTCAGGAAACAAAAAGCCTAGAAACATTATTAAGTCCTACAAGATTCTCCCAATGCCATGGAGAATCTCCACTACCAGTATTATGTAGACAGATTTTAAGGTTTTAATCTTTTAACTGCTTCctttaacatgtttataaaataGGGCTGTGGGTTAagtatgtgtttttaaaatctctACATTCAGAAGTGTGTTTAAGACTGAAATTAAACACAACTAGTAAAAAAGGTTCAGGTAAAAGATGGGAAATGCATGCTTTTAAACAACATCATCCatcacaatacaatacaatacatccTATATACAGTGCATATTATTATGATATACTGTACGGGTCTGTATGTTATCCATATTAGACTCTAAAAGCCATTTTTTCAACCATATTGAAGCTCACATGAATCATCTGGAATGTTTTGGTAGTTGCGTTCTCCACCCTCGAAATACTCATTTGCAAGTCATATTAAAGGAAAGGTGGTTTTAGGAGTGTTGGTTCAGAGTCTACAGCTGTCATTGTGCATGTCAGCCCCAATGCCCCATCACCAAAGAGCGAGCTGACTAGGACACCATGATCAGGAAGCGTTATATTCTCAAAGAGCCTGAGGTCAAAGACTATATGGTCAAAGGAGAGAGATTCACAAAATGGAAAGAAGACTCATCACGCACTGTACCCGTCACTATGAAGATGGATTCAAAAGGATTCTTCCTTTACTGGATAAACTCGAGCAAGGAAGTAGAAATTGTGGATGTGGCGACCATACGGGACACACGGACAGGGAAATATGCAAAACTCCCCAAACATCAAAAAGTCCGAAATACATTCAACATGGACTTCCCTGACAGTAATTACTTAGCCAAGACCTTCACCGTTGTTACTGGACCTGACACGGTCAATCTCACCTACTACAACTTCTTTGCAGCCAAAGAGAAAATAGTGCAGAACTGGGCCGATGACATCCTGGCCATTGCCTACAACCCCCAAAGGGCCAACATCTGCAGACAAATCTACCTGGATAAACTGTATGTTCGCCTCACACTGCAAACCAACAAGGATGGCAAGATTCCTGTTAAATATATCTATAAGATGTTTCCAGCTGACAAGAAAAGAGTTGAGAGTGCACTATCAGCTGCAAAGCTTCCTAAGGGAAAGtTTGACTCCATAAAGCCTGATGTGTTCACTGAAGCTGCATTCAAGACCTTCCTGATGAACCTTTGTCCTAGACCAGAGATCTATGAAATCTTCAGCACCTATTCTAACAAGCCCTACATGACCAAGGAGGTCTTTAGCAAGTTCCTGTATGAGAAACAGCGAGACTCGAGGCTTAATGAAGAGCTTTACCCGCCACTGAGACCTGATCAGGTGAAAGCCCTCATCGACAAGTACGAGCCCTCCTCCACTAATTCAAACCGCGGTCAGATAACCCCAGAGGGTCTACTCTTCTTCTTAATGGGGCCTGAGACAACACCTGTGATGTTAGACAAAATGGCCCAGTGCCATGACATGACCCAGCCCATCCCTCACTACTACATCAAATCCTCCCACAACACCTATCTCACTGCCGGTCAGTTCTCAGGCACCTCCTCTCCAGAGATGTACCGTCAGTGTCTGCTTGCTGGATGCCGTTGTTTGGAGCTGGACTGCTGGAAGGGCAAACCTCCAGATGAAGATCCAATCATTACTCACGGCTTCACCATGACAACTGAGATCCTTTTTAAGGACGTGATCGAGGCTATTGCAGAGAGTGCATTCAAAACATCTAAATATCCAGTTATTCTCTCCTTTGAGAACCATGTGGATACAGTCAAACAGCAGGAGAAGATGGCTAACTACTGTAGGACCATATTTGGAGACGCTCTACTCACTGAACCCCTGGAGAAGTATCCGTTGAAGCCAGGCCACCAGATCCCCAGTCCTTCTGAGCTGATGGGAAAAATTCTGATCAAAAACAAGAAGGGCCCCACTGGCCCAGCCAAACCTCCaccaaagaaaacacaagagGAGGGTCATGGGGAGAATGCAGGAGAGCATCCTGAGAACCCTGAGAACCAGAACCATGAACATGAGGAGCACCATGATGATCACCACGATGACCACCATGATGACCACCATGACGATGAGGAACATGATGAGGAAAAGATGAAGAACTCAGATGAAGGTACAGCTGGGCAGGAAGTAACAGCTTTTGAGGCGATGTCTTCAATAGTCAACTACATTCAGCCAAACAAGTTCATCTCCTTTGAACATTCTAGGAAAAAGAACAGGAGCTATGCCATCTCTTCTTTTGTGGAAACCAAAGGAGAGCACCTGATATCCAAGAGTGCTGTGGAGTTTGTCGAATATAACAAGAGACAGATGAGTCGAATCTACCCCAAAGGAACACGTATGGACTCGTCTAACTATAGCCCTCAGCCTTTCTGGAATGTAGGCTGTCAGATGGTGGCACTGAACTACCAGACCATGGATTTTCCCATGCAACTGAACATGGCACTGTTCGAGTATAACGGGAGGACTGGGTACCTCTTAAAAAGTGATGTGATGCGGAGGAATGACAAGACGTTTGACCCCTTCACCGACAAGATTGACACCAATGTGCCCAGCACACTCTCTATCAAGATCTACTCAGGCCAGTTCCTATCTGATAAGAATGTGAAAACAGCAGTGGAGGTGGAGATCATTGGCTTGCCTGGAGACCCCAAACGCAAATACCGCACCAAATACACTGCCGTACCAAATGCCATCAACCCTGTGTGGAATGAGGAGCCCTTTGTGTTTGAGAAGATTCTGTTGACAGAATTGGCTTCACTTAGGATAGTGGCCTATGAGGAAGGCGGGAAATTCATTGGGCATAGAATTATTCCCATAGATGCCATCCAATCAGgATTTCATCATCTTTGTCTGCGTAGTGAGAGTAACATGCCTCTGATGCTCCCTGCCCTGTTTGTCTACATTGAGGTGAAGGACTACATCCCTGCTGCTTTTGCTGATTTCACAGATGCTCTCTTCAATCCAGTAAAGTCTACAAAGCCTGCAAAACACGAGAGTGCTAACTTTGTAAGCAAATATGAGATGCCTGGTGCTGCAGCTGTTCCAGCCACAGTGCCTGAAGGTGATGAGGCCCCAGCAGAGGGCGACGCTAACTCTTCAGAAACACCTTCAGATGCGGAGCCTAAATCAGACGCCCCAGAGTCCACTGATGGAGAAAATCCCAAGTCAGATGACCAGCCAGCACTGGCTGATCAAGAGCCACAAGCTTCTGAAGCTGAGCCAAACCCTGAGGTGCCTGCAACCTCAGAAGATGCTCCTCCATCTGAAGCACCTCCACCCACCGAAGAGGCTCCTTCCACTGAAGCACCTGCACCTTCTGAAGAGGCTCCTTCCACTGAGGCACCTCCACCTTCTGAAGAGCCTCTGCCCACTGAGGCGCCTGCACCCACAGAAGAAGCTCCTCCCTCTGAGGCACCTCCACCTTCAGAAGAGGCTCCCCAAGAAACTCCTGCACCATCTGAAACCCCTGAGGCAGAGAATCCCGCTGATCCAAATGagctggcCTCTGTGACCTGTGATGAACTGCAGCAGCACAAGAACTACCTGAAGGTCACCAAGAAGCAGGAGAAAGAGGTGAAAGAGCTGGAAAAGAGGTTCCAGAAGAAGGCCGAGGAGATAACTCAGAAATACAGTGACCTCTTCAAATCCCTCAAGAAGAAGACTTCCCCGAAGAAGAATGAGGCAGGGGCTGAGGGGCCAACAGCAGAGCAAATCAACGAGCTGAAAACGAAGCTGAAGACGGAGTTTCGCTCACTGTGGATTGAGAAATACGAtcagctgaagaagaagaaagagcagCATGCCTCTGAGTGTTTGACCAAGCTGCTGGAGATGGCTACAGAGAGACACGCCAGTGAAATGAAGGCACTGAACagTGAAAGTAAAGCGGGGAAGAAGAAAGAATCAAAAAGCTCAGGTTCCGAGAAGAGCAGCTTGAAGAAGTGCAAGAGTAAGGAACAGCTTGACGATAATGACGATGCGCAGTCTGCATCTACCGATGGCATTTCATCACAGGAGCTGGAGCAGAAACTTAAGAAGAAACAGGCTGAAACTCTGGCTGGCATCAGAAGCGTGAACAGTCAGATGAACCAGCAGGCTGTATCAGAGCATGCTAAGAAGATGTGGTCTCTACCAGGTGATCTTAAGGAAGCAGTGAATGCCTGTGTGGGCGCTCACTTCCCGGAGCATGTAGATAAGACTGAAGGCACCAAGTCAGAGCAGGATGGCCAATATGGCCAAGTTTACCGGGGCTGATGTCCATTCAGCTTTCTCTCCTTAGCTCTCCTTATCACTTCTGCAGATGTAGTCGAAAGGTACACTTGAAATAGTTTGGAAAATCATTCTTCAGGAACTTAACAATGCTCATGTTTCAATCCACATGTTGATATAGTTTCTGAGTGAAATGGGTGCAATGTGCCAGAATTTCTCTCATGATATTTGTAGTAAAGCCACTGGCACCGTGGTTTAAAGAGATGTAAAAGAGACAATCACCTGCAGaactgtgctgttacagaaatgtGTCAGTTGTGATTTTAGGATGTATTGAATAGTTATTACAAAGGACATTGCTCTATGATCTTTATTTAGCACTTCCAGTTATTTATGGGAGCATTTTGGTATGTGTACATTTGGAACACATACAGAGAAATGTCTATGGTCTTCATTTAGTACATATAGAATACAATCTAATGTTACTTATTAAGGAGATAGAAGTGATGTCTCACTAATTACGAAAATAAACTTAATTAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199473 lncRNA upstream 3902 19772890 ~ 19774666 (+) True G168504
TU199406 lncRNA upstream 15223 19722780 ~ 19763345 (+) False LOC113538915
TU199117 lncRNA upstream 90977 19682976 ~ 19687591 (+) False G168191
TU199143 lncRNA upstream 181601 19596423 ~ 19596967 (+) True G168207
TU199088 lncRNA upstream 253713 19523154 ~ 19524855 (+) True G168175
TU199571 lncRNA downstream 78668 19887927 ~ 19888154 (+) True G168585
TU199619 lncRNA downstream 178389 19987648 ~ 19987870 (+) True G168630
TU199621 lncRNA downstream 209502 20018761 ~ 20019038 (+) True G168632
TU199622 lncRNA downstream 209898 20019157 ~ 20020371 (+) True G168633
TU199623 lncRNA downstream 211375 20020634 ~ 20021068 (+) True G168634
XM_034308156.1 mRNA upstream 11987 19723910 ~ 19766581 (+) True LOC113538915
XM_026934352.2 mRNA upstream 11987 19723910 ~ 19766581 (+) False LOC113538915
XM_026934353.2 mRNA upstream 11987 19726463 ~ 19766581 (+) False LOC113538915
XM_034308225.1 mRNA upstream 109021 19646283 ~ 19669547 (+) True mthfd1b
XM_034308207.1 mRNA upstream 148448 19620847 ~ 19630120 (+) False LOC113538896
XM_026934292.2 mRNA downstream 27999 19837258 ~ 19839847 (+) True LOC113538872
XM_026933703.2 mRNA downstream 70476 19879735 ~ 19886509 (+) False zfyve19
XM_034307819.1 mRNA downstream 104084 19913343 ~ 19922486 (+) False LOC113538658
XM_034307817.1 mRNA downstream 104084 19913343 ~ 19922486 (+) False LOC113538658
XM_034307818.1 mRNA downstream 104220 19913479 ~ 19922486 (+) False LOC113538658
TU199111 other upstream 90977 19674913 ~ 19687591 (+) True G168191
TU199113 other upstream 90977 19679315 ~ 19687591 (+) False G168191
XR_004578955.1 other upstream 1406597 18330468 ~ 18371971 (+) False ldah
XR_003403895.1 other upstream 1458492 18319970 ~ 18320076 (+) True LOC113539017
XR_004579004.1 other upstream 1852548 17925706 ~ 17926020 (+) True LOC117598336
XR_004578946.1 other downstream 70476 19879735 ~ 19886509 (+) True zfyve19
XR_004578926.1 other downstream 104374 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other downstream 104374 19913633 ~ 19914709 (+) False LOC113538658
TU199644 other downstream 233218 20042477 ~ 20042935 (+) True G168650
XR_004578908.1 other downstream 712336 20521595 ~ 20531222 (+) False LOC113530103

Expression Profile