RNA id: XM_026933853.2


Basic Information

Item Value
RNA id XM_026933853.2
length 8990
RNA type mRNA
GC content 0.50
exon number 28
gene id jmjd1ca
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 15917801 ~ 15981784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagagagagagagagagccataATGACTGTTACTACTCTCAGTGTAAATCAGTTTCAcggcgcgcgcgcacacaccgCTCTGTAGCCGGAGACGGTGAGCAGGGAATTTAAACCGGTCACCCGGTATTCTGTCACAGTGACAATTCCAGCCCCGTTATTTCCTTAGTcggcttgtttttatttgttttgaaatatgATTATACGGTAGTCGGAGCGCTTCCTGGAAGTTAGTTTTCCGCGGATATAGTGTTTGCGGCACTTTTCTTCGGCGGGGACATGGAGCTGGTGGGTCGGCGCTTCCTGTGCGTGAGCGGCGGAGAGGAGCGCGAGCTGGGCGGCGTGGCGCGCTGGGGCTGGAGAGCCGGACTCATCCGCGCTGTCACAAGCCGCCACACTGACAGCCCCACTCTAGCTgtgtgtgtggagtgggACGGCGAACCGTCAGCAGAGTGTAAATGGAGGAGGCTCAGGGAGGAGTGGGAGGTGTTTGTCCTGGAGCATGAGTTGGTATGGGCCAAGAGGAACAGCACCTCACAGGAGAACAGCTCTCCACAGCCTGCACTGgtATTCCAGCCCCTGATTGGCCAAGCGCATGTGGGCGGAGTGGCAGTGGTGGAGTTCCTGTCAGACAGAGAGCTGGAGTTCTACACAGAAAGAGAAGAGCTTCGTCCGTATGAggAGGAAGTGGATGGCGGGAGCTCACTGCTGAGAGAAGATCTTTCAAGCCATGAGCAGCTCCAGGCTTGGCTCAGACATCGTCAGCTCCAGCACATTCTTCAGCTAGGACACAGCAGTGTGAAGGGCCTCAGGGTGAAGGTGTTCAGACCCGATTCCAAACCTCAATGGCTCCATGGTATCGTAAGCCATCATGATCACAACAACAGAACCATGACTGTcctgagcgaccagGTAGCAGAGCCTCTGAGTGTGGACCCAGCACTTGTGCATGTGCTGGTTCTGGACGACATAAGCCAGTTGTTATTAGTGGAACAAAATGCCACAACAAATTGTAAACCTCACACTAACAAGATCAGCAGGATCACCCTGAATACAGGAAACAAGTCAAGAAACACTACAGAAGCAGATCCGGTGTGTAGCTCGGGGCCAGTGCAGAGGAAACAGCCAGAGCTGTGCAGAGAGAAATCCAACTGCAGCCCAAAAGAGGACGACACAGACAGGATGAGAGAGGAGAGCGGAGCTGATGAAGCAAGAGCAGATTCCTCAAAAAGTATGATCAACCATagtgagaggaagaggaggaaagcAGGGGACAAGGAAGAGCAGGATGAAATGGACAGTAGGAGTGCTGGGTTGAAGAGGTCGAAGGGTAACAGTGgctctgaccagtcagaatacAGTGATTCAGAGGGCAGCATCTTGGAATCAAAAAGCCTACAGAGAAAATCTTCAAAGAAGCCAGCTGACTGCAAGACAGTCAACAATCCTGCAGCACATTTAGGTCATGACCTGAAGGCTCACTCGTCCCCCAAAAGCATAGAACTTTCTTCTAGCCAATCAGCAGAGACTGAATGCCAGAGAGTAGGGAAAGTCATGCCCTTGCAGGGTAATTTAACCAACACACCCTGCAATGGAGTGTACCAAACAGTCAATTCATTACAGTGCACCATGGGACTGGGCTGTGATAAAGCAGAGATGGAACGgggagatggagtgatggaggaCCAGAGTGAGGGTGCATCACAAGAGGACTGTGAAGCTGTCTCTGCTCTACTGGCGTCCCAAGAGGATGAGCAGCTGGTTTCCTTGGAGACTGCATGTGTGTTATTGCACACATCGCCACCAGAGTGCGAGGGGGTTGAGGGTGAACAGGAGATTCCACAAGGTGAACCAGAGGTCAGGACATCTGATTTGACGTGCCCAGAGGTCATTACACCCAGTTGCGACCCAGCAGAAGCAGTGGAAGAAGAGCCCAGAGTAGTTTTGACTCACTCTCCCACCATGATTTGCAACTCAAAGGTGGATGCTGTTAAAGTAGTTAAGTCAAGTCAGGCTCCTGGTCTAGCTACTAGTCCTAGACACGATGCTGCTCATGTCTCAGAAATTACCCACAAGACCACTGTACACCAAAGTCCTTGCTCCTCTCTTGAGGTGATTTCCAGGCCACCAGATGTTACAGAGGTTACCAGGCTGAGATGCAGTGCCTCTCCTCAAGCTGCCAGAATCGAAGAGAGCAGTTTGCCCTCAAAAGTCAGTACAGATAAAGTTCTCATTGGATTTAAAAGCACACAAGGTTCCAAAGTTACCCCTACCCTGACCCTTCATCAACATAATGCTCCCTCTCCTAGCACAACAGACATACAGGCTCAATCAAGGACCCCCCCTCAGACTATTGCCCATAATCACATGCCTACTGCAGACAAACTAACTAAGAGCCCACTGATCATTGACAGAAATGAGCCTTTCACGGTCTATCGAGACCCAGCACTTGTGAGGAGAGAACTGGAGAGCCTCTCTACTTATGTCCAACCACCACACACCCCACCCAACCTTCATTCGAAACACCATCTGAAAAGCCCATCTCCCTCCTCCAGCTCCCCCAGCCTTACCTCCACCACCTCCCACACCAAGATCATGAGTCCTGCAGCACACCTCTCACCTCTTCCGCTCCCTTCCCAGTCTCCTTTGTGCTCTACTCACCCCTCCATCCCTCACCCTCACCTGCTTCCATCTCTCCTGCCCGGTTTGCCCCCAACGTCAGCACTCCTGGCTGGACATGCTCGGCTGGCGCCTCTGAGTCTCCCCCACCACCCATTGGCCCTGCAGGCAACCCCATCTCTGCTGGGCCAGGGCCCAGGAACTGCTTCCCTGGCACCGATGGGCCTGTACCCAGTCCTCTGGCCCCCTTTTCCTAATGGGGTGCATGGCTATGGTCTGGGAATGCCAGGGCCCAAGTGGACACCCCCAGACACTGCAGGCATATCTGAGGTTAGCCTGAGGAGGAACACACCAAGCCCCTGGGTCCCTCAGACCTCTCCTGTAACCAGTGCAGAAAGTCAGGGTTTGCAACCCCCGCTGCCTGTACAGCCCTCAAGCGCTGAACCCCAGAGACCATCCAGGAGTGCCCAGCCCAGCACCCCTACCTCTAAAAGCACAGAGGAACCAGAGAGGAGGGTGTTCTCAGAGACTCAAAACTCCACTCACATGCCACTGAAGGCAGAACAGGAGCGTGTGAAGGCAGTAGTGGGAAAGAATGGACATGCATCCCACTCCACAGTCACAGAGTCACCTTCTGCTCGCTCCAAACAGCCTCAGTTGGTGTATGACCTCACAGGCGACCGCACCAGCTGTTACCAGGAGGAGAGTCGGCGCATTCTGCAGGAGAGCATTGAAGTAGCACCATTCACAGCCAAACTCAGCTCAGACAGAGAGCCCTATCCTAAAAGCCCCACTCCTTCACTACatttcaaagagagagagagagagcgacagtgTGACAGAGAGATGCACATGTTCAGACACAGCGTGCCTCCCAGGTTGCAGTCAGCCCAGCCTTCACCAACACTCACCCAGAGTAGCTACTACACCCCAGCAGCTGGCAGTGTGGAGAACAAGGCTTCTACACGTAGAGCTCCACCCAGCAAAGAGCTGTATGAGAGACTCAGTTCCCCAAACACTGCTGCCTCTGTCCTCTCTTCACCTAGCACACAGAGCACAGTCAAAGCTAGACCTCCACCCCTCGTCAAGCGCAACCCTGAGAAAGAGGAAGGTCTCCTGGGCAAGATTACAGACCAGTTGATCTCCAAAACTATCTCACTGGATCCACTAGAAGTCAATAGCATGGAGAGAAAAGGCTCCTCCACTTctctcatttctgtctcttcttcttcttcttctcgcGTTGTACCCTCACTGCACAGGGCCCCCATCTTCCACCCCCCAGCCTTACCCATTGTGACGTCTAAAGAGGCAGGGCAAGGTAGGTTGTCGCCACCCACCCTGACACCCATCCAGCCAATGAGCTTATCTGGAAAGGGTCAGAATCAGCACAGGCCGCCCACATTGATGCCTGAGCTCAGACACGGAGCAGTCACTGGAAAGAGGGCGGCTCCTGAGCCAGTATCCATCACAAACAAAGGTTATGATTTGCAGAGGAGTGGAGTTTTGCACAATCGAGAAAGAGTGATAGGAGGTCACATAACCAACGGAGGATTGGTGAACACACAGGCTGCCACTGCTTCTGTTATTGTTCGTTCTTCTGGCTACATGCACACACCTGTGAACCACACCATCACTGAAAGGTCACTTTCCCAAGTTCATTGTGACCATGTGCGAACATTTGAAAGTTTGCCAAGCACACACTCGAAGGATGGCAATGGTCAGTGTAAGAGGGGCATCCTGTGGACCCCGGTGGACACTGTGCACCCTGTAAACATGGTCACTTTAAAACAGGACATTAACACACCTTTGAACATGACTAAAAATATGagtactcattttttttttttttcaaatcgaGGGGtgaaatattctgtaaatataGATACACCACACTCAATAATAGACTTGGTATCTGAGCAGTGTgaaaaggagaaggaggaaatTAGTACCATAGTTCAGCCAAAGGTGAATCTCTCCTTTTGCCCCCCTAGAGACATCCCCCATGTAAAGAAACGCAGAGCTGGACTAGCTGCTTCAGAACTGAGGCAGAATATGCATGCAGTCCAGCCCCTGAACACTACGGACACTTTGAACACTACCAAGAGTAGATACACTTGCACTACCCACAGTACACATACCAAATGCACTGCGCACACTGTGGACCAAGATAAAGAGTCTATATTCAATCCTAGCCCATCCAAATATCCCAGGTTAGCCCCTGAGGTCACTGGGGTTGTAGCCAGCAAACCAGGCTCAGTGGGAAAAGTTCAGCCACTGTCTCCCTCAACCCATACTAACCATTCTGCCCAGTCTGGTCAAAACAATTACCACAAACTGAAAAAAGCCTGGCTTACCCGTCACTCTGAGCAGGACAGAGGTAGTGTCACCTCAGAGACAGCAGGGGGCAGTACCACACTAACCACCACAACCACTTTCTCTCTGCCAATCAAGCAGGAGGTGAATGGACTGGAGGATAAATGGCCCATACAGGAGGGCAAAGAACTTTTTCTAGATAATAGGAAATCTAAAACCCTAGACAGGAAATGCCTAGTTGAAGACAGGAAGCCCAATGGAAGCAATGCTAAGTCCAACACAGAGGATAAAAAAACACCTCTCACCAGGGATAATAAAGTTACTTTAGAAGAAGTAAAGCCCATCATGGATAGAAATGGCAACTTGCAGGGTAAGGAGCCTAACTTTCAGAATAAGAAACTATGCATTAATATAAGGAGGCCAAACTCAGCCGAcataaaaatagagaaagatAATCATGGGGAGAAACGGATCTTTCAGTCCAGCTTTGAAAGTGAGAGTGGAGGGGACTCGGTCAATGAAAACAAGTGTCACAAATCTGACCCAGGGAGCATACATCGGCCCAAACCTGCATTCAAAAAGAAGCAGAATGACCAGAAAAAGCAGAGaggtgagaatgagagagaggatgaagaggaagagggagaagaGGATGAGGGAAAATTTAATGGCACAATCCAGACTACCAAAGAGAAATCTCACCACAGGCTGCCTAGCAACGGCATTCCTCGTTCAGTGCTGAAGGACTGGAGGAAGGTAAGGAAGCTGAAGCAGAGCGGCGAGGCCTTCTTGCAGGATGATTCATGTGCAGAGATTGGAGCTAATGTACAGAAATGCCGGGAGTGCCGATTGGACCGCTCACGCAAGGCCCAAGAGCCTGTCATTTCACCTGTCTTTTGTCGCTTCTACTACTTCCGCAGACTGTCATACAGCAAGAACGGAGTAGTGCGGGTGGACGGCTTCTCTGTTGTGGAAGACACTGATGAAGAAGCAGTGCGGGTGTGGGTGGCGGGCTTTGAAGATGAACAAGAAGACAAGCAAAGGGAGATGGAGCTGGACACAGCCAAATACATTCTCACACTCATAGGAGACAAGTTTTGCCAGCTTGTCAAGACAGAAAACACTGCTGTCACATGGGTCAAGAAAGACAcccaGGTGATGTGGAAGCGAGCGGTGAGAGgtgtgagagagatgtgtgaCGCATGTGAAGCCACTCTGTTTAATATGCATTGGGCCTGTCACAAATGTGGCTTTGTGGTGTGCATGGACTGCTACAAAGCCCGCGAGAGGAAGAGTGCCAAAGATAAAGAGCTGTATGCCTGGGTTAGGTGTGTGAAGAATCAGCCCCATGACCTGAAGAGCCTAATGCCTACTCAAATAGTCCCAGAGAGAGTGTTAGCAGATCTGCAGAGCGCCATGCACTCTATAAGGAGAGAATACGGCATCCCCTCTCAGTGCTCTTGCTTTGGCAGCAGTGCCTTCCTCTCCAGATCCACCATCACTAATGGCGTCTTACAGCTTTCTGAGAGGCCACAGTGCAACTTGAAAAGCCAGCAGCAAAatcagcagaagaccacacagAACACTGCTCACAAGATCTCCACAGAGAGAAGAGGAAAATTGGAGTGTGATGATATTGAGACTTTGGGCAGGAAGTCAGGCAGCCCAGAGCAGGGCTCCACTTTGCGTGACCTCCTGACATCCACAGCTGGAAAACTGCGTCTGGGATCCACTGGGCCTGGAATAGCCTTTGCACCAGTTTATAACACTGATCAGACTGCTCAGAAAGCTCGCATGCCCAGCCTCCTGGATGACATTATTGCCTCAGTAGTGGAGAACAAAATTCCCGCCTCAAAGATGACCAAACTTCGGTTGAACCAGAATTTGCtgacagaggaggaggaagagctgGTGCTGGAGGAGGTGAAGCCTATTCGAATCCCACTGGCTGACCCGCATACCAGTGTTCCACATGATTGGATAGGCAGCCACCGGTTGCTTTGGCTTAAAGATCACCATCACCTAGGCAACCAAAGATTGTTCAAAGAGAACTGGACACAAGAGCAGCCGGTGCTGGTCTCTGGCATGCACAAGCGTCTGAATGCCAGTCTGTGGAAGCCAGAGCACTTTAGCAGAGAATTCTCAGCACTCCACAGTGATTTCTACAACTGCCGTGATGGGAGCATCATAAACACCTGTGTCAAGGAATTCTGGGATGGATTTGAGGATGTGTCAAAGAGAACTAAATCTACTAAAGGTGACCCTGCAGTATACAGACTGAAGGACTGGCCATCAGGGGAAGAGTTCCTGGCACTCATGCCATCCAGGTATGAAGACATTATGAGGTCATTGCCAGTTCCAGAATACACTGGTCCAGATGGAGCCCTCAACCTGGCCTCTCGCCTTCCGTCGTTCTTCATCCGGCCAGATCTGGGTCCTCGTCTCTGCTGTGCTCATGGTGTGACAGCATGCCCAGAGCAGGACTTTGGAACCAGCAATCTGCATGTTGAAATATCTGACACTATGAGTATTCTGGTCTACGTGGGTGTAGCCAAGGGCAATGGAGCTCTCTCCAAGTCAGGAGTTTTGAAACTCTTAGAGAGAGAGGATCTGGATGAGAGTGCAAAGAAGAGGCTGAGAGATCCCAATGAAACTCCAGGCGCACTGTGGCACATCTACCTGAGTAAAGATCTCCATAAGATCCAGGAATTCCTCCAAACGgtagcAGTGGAGCGTGCTGAGGCAGATGCTGAGGCTGACTCTGAGGCAGAATGGGAGAGTGAGGCAGACCCTCTTCGTGAGGGGAGCTGGTACCTGAGCCCGAAGCTGCGGCAGAGGCTGCTGGAGGAACACGGTGTGGAGAGTCGCACACTGCTGCAGTTCTACGGCGACACTGTGATTATCCCTGCCGGAGCCCTACACCAGGTGATGAATTTGCACAGTTGCATTCAGGTGAATGTGGACTTTGTGTCCCCTGAACATGCCCACAACTCGTATTACCTGACCCAGGAGCTCCGCCCTCTCAAAGACCAAGTTAATTATGAGGACAAATTACAGGTAAAGAACATCTTCTACCATTCTGTGAAGGACGCTGTGGCCGCTCTGAGCCGGCACTTGAAAGAACAGAGCACAGAGGAGGTCAAGGAGGAAGAATGCTGACGGCATTCATGCTCACTCTGTGAGCATGGCACAAGGTGCAGACAATCTCCAGATCCTTCAGAGAGGAACCACTGCTCTGCGAACCAATTCCGAAGTCGCACATTTCACACCAATGACCATAAATACTATTTTGCTTCCGTGCAAGGACCCATCACTTTCTCCATGATGTCACCATATTCTGTTTGATTATTGTCGCTATATCTTCTCCAGAGCTCagccccaccctgatatcttccTGCTTGGCCAGGAAGTGAGGTGAGAGGCTGAGGCATGTCTGAACAGTGGAATAGACGAAGTGGAACTCTCTCTCCTGAGCAGGCAGCTGCAAAGTTGCTGAGCAGGAAGAGAGGTGAACTGCTAAGCACAGCACTTTCGAGCTCTCACATGCTGTAGGCTGTGGATAACCAATGCAAAAGAACAACCACAAAGgcatttttcttcaaaagaTGATGCTCTGAGGCATATTCTTAATCAGTAGTTATTGTGCTGCTAACTGTTAGCTACACTTGTCTGCTGAGGTTCAGACAGTTGGGAGAGCAGCTAGGCCAACACAACCATAGCAGCATTCCTTTACGTCAGCCAGCGCCAAGCTGTtagcttttattgtttttgttcaaaggtgatattaaattattaacagtTTGGCTGGTATTCACTGTGCAGAAGGAGAATATAAAGGAATTTGCAGTATatgatgtgtttgtttaaaaaaaaggttcttgtGAAATTTTGAGCTGAAATATGTAAATAGcagaatatacatatataatatattaattatgatttttctataacatgGTGTGCTTTATTTGCTGTATGTGTTGTTTGCTACTGTATGTACATTGAAGCTAAAGAGatgttttacattttccattaaaaatggAATCAATCAAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196943 lncRNA downstream 21231 15895667 ~ 15896570 (-) True G166319
TU196899 lncRNA downstream 71546 15664486 ~ 15846255 (-) True G166289
TU196896 lncRNA downstream 310279 15605903 ~ 15607522 (-) True G166286
XR_004579032.1 lncRNA downstream 426793 15481130 ~ 15491008 (-) False LOC113539013
TU197027 lncRNA upstream 18435 16000219 ~ 16000512 (-) True G166390
TU197138 lncRNA upstream 285445 16267229 ~ 16267515 (-) True G166484
TU197311 lncRNA upstream 463057 16444841 ~ 16446005 (-) True G166633
TU197551 lncRNA upstream 762822 16744606 ~ 16744822 (-) True G166865
TU197619 lncRNA upstream 857297 16839081 ~ 16861229 (-) False LOC113538645
XM_034308030.1 mRNA downstream 3091 15906357 ~ 15914710 (-) True egr2a
XM_026934535.2 mRNA downstream 28263 15883398 ~ 15889538 (-) True rtkn2a
XM_026934171.2 mRNA downstream 39457 15864120 ~ 15878344 (-) True zfyve28
XM_026933793.2 mRNA downstream 54173 15858730 ~ 15863628 (-) False nt5c1ab
XM_034307845.1 mRNA downstream 54876 15858730 ~ 15862925 (-) True nt5c1ab
XM_026934497.2 mRNA upstream 5302 15987086 ~ 15992896 (-) True ahsa1b
XM_034308383.1 mRNA upstream 19278 16001062 ~ 16007423 (-) False si:dkey-229e3.2
XM_026934496.2 mRNA upstream 19278 16001062 ~ 16007418 (-) True si:dkey-229e3.2
XM_034308068.1 mRNA upstream 28693 16010477 ~ 16035433 (-) True eprs1
XM_034307848.1 mRNA upstream 137933 16119717 ~ 16136443 (-) False zgc:174356
XR_003403876.2 other downstream 155083 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 254306 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 254306 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 595797 15304623 ~ 15322004 (-) False pgfb
XR_004578922.1 other downstream 800437 15109594 ~ 15117364 (-) False capn3a
XR_003403899.1 other upstream 34568 16016352 ~ 16016484 (-) True LOC113539022
XR_004578948.1 other upstream 1264155 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 1264155 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 2323959 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 2323959 18305743 ~ 18316207 (-) False G167566

Expression Profile