RNA id: XM_026933879.2


Basic Information

Item Value
RNA id XM_026933879.2
length 2202
RNA type mRNA
GC content 0.44
exon number 3
gene id rpusd2
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18551683 ~ 18556050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtaataaataagcTTACGTTGTTAGTTTTTGTCTGAATAGATAAATTGCCGAAACTAAGTTATCGTGTAGCGCTGCTAGTTTACTTGTGATGTCATCAGTCTGCGACAGAACACGCGCACGGGCATGTCAGCACGGCATGTTGGAGCAGATGGTATATCTGTGTTAAAATGTCTACATAGACTGGTCAGTTGTTTACAATTACACAGTAGTTGTTTTAGAAAGAGACGTGTACCTGGTGACATTTCTTCACTGTGGGATGGAATTGATGTTAGCGGTACTATAACGCGATGTAAACAGCTCCGGCGAGATTTCCACACCGCAGTCAGTGTTTTCAGAGCAGAGTACTACAGAAATAAGTTCAGCATCATGGAGAGCAAAGAGTTAAACACTGCAGAAATGGGAAAGGAGCAAGAattgagtgtgagtgagagcaAAGAAGTGAAGGAAAGCTGCAAGAAAAGGAAAAGCGAAGACCCTGAAGAACATGAGAGAAACAGACGGGGTAAGAAGAGAAAGGGAAGCAAACAGATGAAAGCTGGGGATAGATATGTTCCTCCACCACAAAAACGCAATCCTGGAGTGAGTTTTAACCAAGAACACTTTGCAGAAACATCCTACTATTTTGAAGCAGGACTTAGAAAAGTGCACCCTTATTATTTCGATTTTAAGACTTACTGTAAGGGACGCTGGATTGGTAAAACCCTGTTAGAAGTTTTCAGCAGTGAATTTCGAGCAGAACCTCTAGACTACTATAAGAAAGCAGTCAAAGAGGGACGCATTCGACTGAATGAGATACCTGTGGACGACCTGAATATAACCCTGAAGAACAATGACTTCATGAGGAACACCGTGCATCGCCATGAGCCCCCTGTCATTGGGCAGCCACTGCAGGTCTTAGTGGATGATGGTGAAGTGGTGGTGGTAGACAAACCCGCCTCTCTGCCCGTACATCCGTGTGGCCGCTATCGCCACAACACCGTCATCTTCATTTTGGGGAAAGAGAGAGGTCTGTGCGGTCTTCACACCGTGCACCGTCTCGATCGCCTCACCTCAGGCATCCTGCTGTTTGCTCGCACTCTGGAGACGTCCAAGAAACTGGACCAGATGGTTCGGGATCGACAGTTGGAGAAGGAGTATGTTTGTCGTGTGGAGGGGGAGTTTCCTGACAACGAGGTTGTGTGTGAAGAACCAATTCTGGTAGTCTCATTCAAGGTGGGTGTCTGCAGGGTGGATCCCAAAGGCAAAGACTGTCGCACAGTTTTCCAGAAACTCGGTTATAATGGGCGCTCTAGCGTGGTGCGCTGCCTCCCACTCACTGGGCGCACGCACCAGATCCGCGTGCATCTCCAGTATTTAGGCTTCCCCATCCTCAATGACCCCATTTATGGCTCTTCTGCTTGGGGCCCGAACAGAGGCAAAGGAGGCCTGGTGGGTAAAAATGATCAGGAGCTGCTGGAAGCTCTTATTGAGGAGCACCGTTCCAAGGAGAGTTTGCACCTCTTGGATATCTCTGATGAAGTGTTATCTGGAAAGGGCGAGCCTAATGTGGGCACCAGTGGCGGTGCTCTGGTTGACAATGCACTGACAGTCATGACTGAATCTGTAAACACTGCATGTGAAGAATCAACTGCAAGTACTACTTCAAATGACAAGGAAGCAGAAACGAATACTATACAGGCAAAAGAGAGCAGTTATCACTCTGAGGAAATATCCAGAACTGCAAACACGATCAAGACAGTCAGAGATCATTTATGTTCGGAGTGTAAAATTGTCCGACCTGACCCTACAGAGAAGGAGCTAGTCATGTATCTGCATGCATTACGCTACAAGGGGCCTGACTTTGAGTATTCCACACAATTGCCTGATTGGGCTAAAGAAGACTGGGTGCAGgattgaaatcttttttttttttttaatgttatttcctgttctttatgaatatttaatctgtaaaaaaaGAGTGAATAGAATATGGTTGACCTTTGGATTTGCATCTGAAATTAGAACTTTGATCTATCCTTTATGTGaaaatttcagtaaaaacagctttaagtgaaaatgtaaaatttctGAAACCATTCAAAAagctgagtaaaaaaaatctttgaaaatAGAGACACCACTATATGAAGTTATTCAGACACTTGTATTCTCCATTTTCTGTGATCCAGGTCATGGCtcagtaaaatataaatcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198523 lncRNA downstream 92889 18458455 ~ 18458794 (-) True G167684
TU198434 lncRNA downstream 146908 18404553 ~ 18404775 (-) True G167618
TU198433 lncRNA downstream 152259 18399171 ~ 18399424 (-) True G167617
TU198386 lncRNA downstream 234984 18316478 ~ 18316699 (-) True G167580
TU198385 lncRNA downstream 248344 18302105 ~ 18303339 (-) True G167579
TU198626 lncRNA upstream 7921 18563971 ~ 18564379 (-) True G167783
TU198632 lncRNA upstream 15453 18571503 ~ 18571893 (-) True G167786
TU198648 lncRNA upstream 40531 18596581 ~ 18596886 (-) True G167802
TU198652 lncRNA upstream 44281 18600331 ~ 18601314 (-) False bahd1
TU198742 lncRNA upstream 246391 18802441 ~ 18802693 (-) True G167883
XM_026934266.2 mRNA downstream 25784 18519897 ~ 18525899 (-) True pkdccb
XM_026933851.2 mRNA downstream 39076 18459472 ~ 18512607 (-) False eml1
XM_026933850.2 mRNA downstream 39076 18459472 ~ 18512607 (-) False eml1
XM_026933849.2 mRNA downstream 39076 18459472 ~ 18512607 (-) False eml1
XM_026933852.2 mRNA downstream 49816 18459472 ~ 18501867 (-) True eml1
XM_026933881.2 mRNA upstream 68 18556118 ~ 18563366 (-) False pcmtl
XM_026933880.2 mRNA upstream 68 18556118 ~ 18563328 (-) False pcmtl
XM_034307795.1 mRNA upstream 68 18556118 ~ 18563286 (-) False pcmtl
XM_034307794.1 mRNA upstream 68 18556118 ~ 18563225 (-) False pcmtl
XM_026933884.2 mRNA upstream 68 18556118 ~ 18563222 (-) True pcmtl
TU198375 other downstream 169228 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 235476 18305743 ~ 18316207 (-) True G167566
TU198372 other downstream 235476 18305743 ~ 18316207 (-) False G167566
XR_004578948.1 other downstream 1303864 17245939 ~ 17247819 (-) False htr1b
TU198855 other upstream 287753 18843803 ~ 18847696 (-) False LOC113538624
TU198915 other upstream 405658 18961708 ~ 18966613 (-) True G168015
TU199357 other upstream 1034018 19590068 ~ 19594777 (-) False LOC113538862
TU199706 other upstream 1457529 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 1766714 20322764 ~ 20330744 (-) True gchfr

Expression Profile