RNA id: XM_026933891.2


Basic Information

Item Value
RNA id XM_026933891.2
length 3339
RNA type mRNA
GC content 0.41
exon number 11
gene id spint1a
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19923133 ~ 19937793 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCATGCGCTCGCGCTCTGTCGGATCGaatttcacttcctgttccgCAGGTATCGGGCGCACCTGCTGTGAGAGGAGGACGTCATTCGCCTTCTTCAAGGTTTCAcgaaaatttcttttttttcagttcagttttcagttttttgtCATTTCCGTTGGAGGAATTTTGTGGAGAGAGAGTTCTTGAAGTGAAGAAATACTTCAGGAGAGAAGTCTGAAGCTGAATTGAACCGAGTACTCAAAGTGGAGAGAAGAGAGATTATTTcacaagatgatgatgaagaagttGATGATGATGCCTCCCTATCGGATCTCTTTGTTAGTTCTCACCATATCGCTGCTGCAAACTCTTCTGCTGGCCCAGATCCCCTCAGAACAATGCTTAAACAAGTTTACGAAAGGAAAGGATGACTTCATTTTAGACAcagatgaatcagtgaatgatgGCGCTCAGTTCCTCGGATCTCCACAGGTCACTGGAGTCAAAGAGTGTGTGGCTGCATGCTGTAAAGAGTCCAACTGTAACCTGGCCTTAATGGAAAATGGAGCTCAGGAGGGGACCATCAAGTCCTGCTTCCTCTTCAACTGTCTGTATAAGCAGAAGAAAGTGTGCCGCTTTGTCAGAAAGAAGGGTTTCAGCAACTTTGTCCTGAGTTCTGTTTTTGGCAGCTACCTGGAAGAGTATGATCCAGATAAGAAGGATCACCCTCCTAGAGCAATAGCCGGACAGGACAGAGTGGTGCAGCCTCATGACGTTGTGATGCTCAATGGCATTGAGAGCAAGGATGACCATGAAATTGTTCAGTACCAGTGGGTGCAGATGTCTGGAAGCCCCACAGCTGTCATGGAGAAAACCACTTTTAAAGATGAAGTGAGGGTGTCCGGCCTGTCTCCTGGAGTATATAAGTTCAGGCTGACTGTCACAGACAACGCTGGCCAGTCTGACTCAGCAGAGGTCACTGTCTTGGTCCTCACACCTGAGCAGTCACACCACCACTGTCTGGTGCCTAAGAAGGTAGGACCATGCCGTGGTTCCTTCCCTCGCTGGCACTACAATGCGTTGTCGGAGCAGTGTGAGAAATTCACCTTTGGTGGCTGCAGTCCAAACCGCAATAACTATCTGTCTGAGCAGGAATGTATTGAAGCCTGTGATCAAGTTTCAGTAAAAACATTTCCCTCACCAGGAAGACATGGTCCAATTGAACTTCCAAAAGAGGAATGTGGCATGTCATGTGGACCAGAGAAGTTTACCTGTGCTAATGGATGTTGCATAGATAAAGTGCTCGAATGTGATCAGATGAAGCAATGTAGCGATGGCTCAGATGAAGATCAGTGTGCCAATATGGACTCAAACTTTCACAGATTGCTTGACATAGATGAAGATGAGGACAAAGGCATGGCAGCCAGCCATTGCACACAACCTCCTGTCACAGGACCCTGCCGGGACAGCAGTACCAAGTGGTATTACAATCCATATGATCAGAAATGCATTCGCTTCAACTATGGTGGCTGCCAGGGCAACGATAACCAATTTAATTCTGAGCAGGACTGCATGAAATTGTGCAGTAAAGTGACTGAAAAAGATGCTTTCGCCAAACGGGCAGTCTTTGAGAAGCAGACACAAGACAGTCAATCAGTTGCCATTGCCATTGCTGTCGCACTGGGCTTGGCCATCCTGATCTTGCTGGCTGTGATTGGTTACTGGAtcctgaaggagaagaagaagaagcagcagccaAGGCGCCAGCACATTTCTGCTAACGGTGCACACCTACTCACTATAGAGGACACAGAGAAACTTGTCTACAATAGCACCACCAAACCCATCTGATTCCCACCTTCTTTGTCCGTCTATAGCAGTCCTTCTGTATTCCAACACAGTATGCTTTTTCTGCTGTAAAACACCCAAATCTGCTCAATCAGAGTTTGATGATTAGCTGATGATATAGGTAACATTTAGAATGCTACATTTAGAATGCCCAAAATATGGGAATTGCTGTATATATCAACTTGAAAAGATTTTCTGGTAGACCTCTGTATAGGAATTATGTTGGAATTTTTGAAGCTTCCTGACAGCTCCAATGTCTTTAACCAAACAACTGCAACTGCCTACATAAGCATGCTAAGTCTCCTTAAAAATAggtttttaaaaggttttaaataaGAGTTTGACTTGAGAAGGGATTATAGTGGATTAccacccacttcaggtttactgaagattagaaagaaatgcagtaatattttacataaacacagaaaaaagctAATGGTAGCTAATATTAGATAAGAACTACCACTGCCATATTTATCTAGTAAATGAAATAGCAATGTGTAAACACTTTCAAGTCAGGATAACAGGAAGTTTTCCGATCCCCCTGATTTTTCTCACATGAAGTGAATGCTGGGAAAATTACAAAACTGTGCAAAACATGGTGACCCCGAGACTGGAATTAAGAACCACTGCTCTTCCCCATTACTGGAAACGCATTGTTTAGTGTTGTCCCTACCCTAACACAGCAGATTCGGATTGTCCGCTAATCGCCGAGACCTTCAGCAAATGAATCAGACAAACTAGGGAAGACGTGAGCACGTGCAGGCAGGACTGAGACTGGGACCACTCCTCTGAACTTGTACACCAGTAACAAACTCTTGCGAAAGCTTGTGGATGCTTTTAAAtgacgattttttttttttaaatagtttattttatttggcaGTCCGCTTGGTTTGAACAAGGTGTGTCTTGAGGAGGTAAGGTGATTGTTACAAccttcattattaattttttttgtttgctaacTATATTCTGTACATTAAAATTGTGTTGATTTATTATATGTACTGCATTATActgttttttaatattgtttttttaatcagtatctCTGTACTCAGGGTTTAACGTTATAATTTAAATGTTCAGATCTGCTTTCACATGAGAATCGGTTTGTAAGTCCTAGACTAAAACTATTCCAAAAAGTTTATATTCCACAAGATTTGGCCTTGCAAACTGTTCCACTGTGTTTTTGAGGTGGATGCACAATTTAATCATGTAGTTGATTCTGACTACGTGgtaacattttattgttatttttgtgaGTTTTAGATTCAGTTTTTCATGGTGGCTTGTACATACCACTGTAGTTCTAAGTTAAAGGAAAAtgatttaaggaaaaaaatttaaatcatttcCATAAACCAGATTTTAATAGTTTAAGCTAAAACAATCATATGTGAACTTCTTGCTCACttctttttgtaaatatatatatacataacattTTGAACAAGTTTGTCCATCTGGTTTTAAAGAttcaataaaatatactataatGTA

Function

GO:

id name namespace
GO:0008544 epidermis development biological_process
GO:0030593 neutrophil chemotaxis biological_process

KEGG:

id description
K15619 SPINT1; Kunitz-type protease inhibitor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199571 lncRNA upstream 34979 19887927 ~ 19888154 (+) True G168585
TU199473 lncRNA upstream 148467 19772890 ~ 19774666 (+) True G168504
TU199406 lncRNA upstream 159788 19722780 ~ 19763345 (+) False LOC113538915
TU199117 lncRNA upstream 235542 19682976 ~ 19687591 (+) False G168191
TU199143 lncRNA upstream 326166 19596423 ~ 19596967 (+) True G168207
TU199619 lncRNA downstream 49855 19987648 ~ 19987870 (+) True G168630
TU199621 lncRNA downstream 80968 20018761 ~ 20019038 (+) True G168632
TU199622 lncRNA downstream 81364 20019157 ~ 20020371 (+) True G168633
TU199623 lncRNA downstream 82841 20020634 ~ 20021068 (+) True G168634
TU199624 lncRNA downstream 84589 20022382 ~ 20022838 (+) True G168635
XM_034307819.1 mRNA upstream 647 19913343 ~ 19922486 (+) False LOC113538658
XM_034307817.1 mRNA upstream 647 19913343 ~ 19922486 (+) False LOC113538658
XM_034307818.1 mRNA upstream 647 19913479 ~ 19922486 (+) False LOC113538658
XM_034307821.1 mRNA upstream 647 19913633 ~ 19922486 (+) False LOC113538658
XM_034307820.1 mRNA upstream 647 19913633 ~ 19922486 (+) False LOC113538658
XM_034307796.1 mRNA downstream 4118 19941911 ~ 19984241 (+) True LOC113538714
XM_034307797.1 mRNA downstream 4120 19941913 ~ 19984241 (+) False LOC113538714
XM_026934008.2 mRNA downstream 4120 19941913 ~ 19984241 (+) False LOC113538714
XM_026934010.2 mRNA downstream 4120 19941913 ~ 19984241 (+) False LOC113538714
XM_026934009.2 mRNA downstream 4121 19941914 ~ 19984241 (+) False LOC113538714
XR_004578926.1 other upstream 732 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other upstream 8424 19913633 ~ 19914709 (+) False LOC113538658
XR_004578946.1 other upstream 36624 19879735 ~ 19886509 (+) True zfyve19
TU199111 other upstream 235542 19674913 ~ 19687591 (+) True G168191
TU199113 other upstream 235542 19679315 ~ 19687591 (+) False G168191
TU199644 other downstream 104684 20042477 ~ 20042935 (+) True G168650
XR_004578908.1 other downstream 583802 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other downstream 583802 20521595 ~ 20531222 (+) False LOC113530103
XR_004578911.1 other downstream 583802 20521595 ~ 20531222 (+) False LOC113530103
XR_004578909.1 other downstream 583802 20521595 ~ 20531222 (+) False LOC113530103

Expression Profile