RNA id: XM_034307817.1


Basic Information

Item Value
RNA id XM_034307817.1
length 855
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC113538658
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19913343 ~ 19922486 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgttaaggtcACTGAGCCAGATCTGCAGCTGCTGCCCACCGAACCTCACCATGAACCTTCAGCTGTCGTTCTGCCTCTAGGTGCTGGTGAGCTGAACAGCGCATGGTGCAATGATCACTTCCTCTCTGCAGCTCCCATGGACATTAGGAGAGACTTCCTTGAATGATAAGGGGTGCAGAGAGTCAGCTCTGCTGGTTTGAAACCACAATGAGACACTGCTTGAATCACAAGGGATTCCCTTATTATACCAACACTGAGGACTGTTTCACTGGCAGACAGGGTGTATCTGGGAGGGATAGAGAATTCATTTCCTGTAACCGCATGGAAACGCCTGTCAACATGCCACTTGAGGGTTATGTGGAGAGTGAGGAGAGCCTTGACCCAGAGGAGATGGAGGTCCCCTTTATTAGGAAAGATCCTCTTccctgtccagtttggCAGTTCTTAAGTTTCCTTCGTCAGCAAGACATGGTCCAACTGAAGGTCCGAGTGATGGTGACATGCCACCAGAGGCACAGATACCTAACTCATAAGCCAGGTGTCTcagtgactgacaggaggcagAGGTCTTTCACGCCCCCGTGCTCTTCGCCATCTAGCACACCACTGCAACCTCCGCAGCATTCACCAAGAGTCCTTACCAATGCCGAAAAGCAGGACCCTATGCTCAGAGAGagcctgttgtgtgtgaaaatcccaggagatcagcagtttattaaATACTCAAGCCAGCCAATCTGgtatcaacaaccatgccacagtgaAAGTCGCAgcgatcacactttttccccattctgatgtttgaacatgaactgaagctcttgccctTTATCTGTGAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199571 lncRNA upstream 25189 19887927 ~ 19888154 (+) True G168585
TU199473 lncRNA upstream 138677 19772890 ~ 19774666 (+) True G168504
TU199406 lncRNA upstream 149998 19722780 ~ 19763345 (+) False LOC113538915
TU199117 lncRNA upstream 225752 19682976 ~ 19687591 (+) False G168191
TU199143 lncRNA upstream 316376 19596423 ~ 19596967 (+) True G168207
TU199619 lncRNA downstream 65162 19987648 ~ 19987870 (+) True G168630
TU199621 lncRNA downstream 96275 20018761 ~ 20019038 (+) True G168632
TU199622 lncRNA downstream 96671 20019157 ~ 20020371 (+) True G168633
TU199623 lncRNA downstream 98148 20020634 ~ 20021068 (+) True G168634
TU199624 lncRNA downstream 99896 20022382 ~ 20022838 (+) True G168635
XM_026933703.2 mRNA upstream 26834 19879735 ~ 19886509 (+) False zfyve19
XM_026934292.2 mRNA upstream 73496 19837258 ~ 19839847 (+) True LOC113538872
XM_026933767.2 mRNA upstream 104084 19778568 ~ 19809259 (+) True plcb2
XM_026934352.2 mRNA upstream 146762 19723910 ~ 19766581 (+) False LOC113538915
XM_026933891.2 mRNA downstream 647 19923133 ~ 19937793 (+) True spint1a
XM_034307796.1 mRNA downstream 19425 19941911 ~ 19984241 (+) True LOC113538714
XM_034307797.1 mRNA downstream 19427 19941913 ~ 19984241 (+) False LOC113538714
XM_026934008.2 mRNA downstream 19427 19941913 ~ 19984241 (+) False LOC113538714
XM_026934010.2 mRNA downstream 19427 19941913 ~ 19984241 (+) False LOC113538714
XR_004578946.1 other upstream 26834 19879735 ~ 19886509 (+) True zfyve19
TU199111 other upstream 225752 19674913 ~ 19687591 (+) True G168191
TU199113 other upstream 225752 19679315 ~ 19687591 (+) False G168191
XR_004578955.1 other upstream 1541372 18330468 ~ 18371971 (+) False ldah
XR_003403895.1 other upstream 1593267 18319970 ~ 18320076 (+) True LOC113539017
TU199644 other downstream 119991 20042477 ~ 20042935 (+) True G168650
XR_004578908.1 other downstream 599109 20521595 ~ 20531222 (+) False LOC113530103
XR_004578910.1 other downstream 599109 20521595 ~ 20531222 (+) False LOC113530103
XR_004578911.1 other downstream 599109 20521595 ~ 20531222 (+) False LOC113530103
XR_004578909.1 other downstream 599109 20521595 ~ 20531222 (+) False LOC113530103

Expression Profile