RNA id: XM_034308017.1


Basic Information

Item Value
RNA id XM_034308017.1
length 5491
RNA type mRNA
GC content 0.48
exon number 20
gene id cep170b
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20027293 ~ 20059002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGGCGGAGCTGGGAGAACTCGCTGCTCTCATGTCTGGGAagggagggtgtgtgtatgtgtgtgtgttagtttgatCTACCTGGATGACCACGGCTTTTGAGCTGTacgtttatttctttaatttactgtaattatgTAGCTGTGTATTTGAGGAGTAGCAGTGTATAACGGACTCTCAGTGCTAAAGcagttgttgttgatgatgatgacggcGTTATTTGGGAAAGTTAAAGTCAGACTCGTTTCCGACTTGCAGACGCgtttgctcatttcctgttgcTGAACGCTGGGAACAGCACTTTCCCTCCTCCCTGAAAGTTTATTCTGGGATGCTAAATAGCATTTGATAAAGCGTGTGAAGATGAGTGTGACCTCATGGTTCCTGGTGAGCAGCTCGGGCACACGCCACCGTTTGCCACGCGAGATGATCTTCGTTGGCCGAGAGGACTGCGAGCTGATGCTGCAGtctCGTAGTGTGGACAAACAGCATGCTGTGATCAACTATGACCCGACCACAGACGAGCACCTTGTTAAAGACCTGGGCAGTCTTAATGGGACATTCGTGAATGATCTTCGAATCCCTGACCAGACCTACATCACCCTGAAGCTCTCTGATGTTGTTCGCTTTGGATATGATTCTCATGTTTACATCATGGAGCGGAGTCAACACAAAGTCCCAGAGGAGGCTCTTAAGCATGAGAAGTACACGAGTCAGCTGCAGGTGGGTGTAAATCCTCTAGAGCTCGGGAAGACAGAGCAGGTGGACGAGAAGACCAGCGCTGCAGATGTGCCGCATTCCAAACACGAAAAGAACGAGCGCAAATCCAATACGGAGCCACCAGTCTTCAAGCCCACTCCTTTGTATGGCCAGCCGTCATGGTGGGGTGATGTTGATGAAGACAACAAGGGTGAGCCCGGTGAATCAAGCAGCAACCTCAATAGTGCAGaaaaacagaaggaagACTCCAGACAAGAGTTTAATGGACCCTCCTCCGAACATCAAGGAAAGACCATTTACTCCAGTCGAAGGGATGCAAGTTACTTTGAAATTACCACCAAGGAATTGCAGTCAAGGCCCAAAGCTACAGAGCAAGAGGTCCAGGTGATCCCAACAAAAGACACAGTCAATAAAGCACCACCTACACCCCCTGTAGTGCagagccacgcctccttcaccatTGAGTTTGATGACTGCACTCCCGGAAAGATTAAAATCAAAGACCATGTTACAAAATTCTCCTTCCGCCAACGCAAGAACCCCAGCAAGGAGTCACTTGTCACTCCAACAGAGGTGATGTCATCAGAGAGCAAGGTGGCTGATTGGCTGGTACAGACTGGCACAAGCATGATGGGAAGAAATTCCAGGTCAGATGATCTTTACACCACCAAGAGTGACCTTtccaaaaacagaaatactCTGAAAGATGGACACCATCATGAGGACGGAACACAAAGCGACTCTGAAGATCCTGTCTCAAATCCTCAAGACCTCTCAAGAGAGTTGACCCCCCAACAACTTTTCACTCctccagagagagaggaacCTCCCATGACCTCCACACCACGTTATCAAACTCAGCCTAAAAAGGACCCCCAGCAAGCTTTTGTCATCAGTTTCCTTGATGATGATGTACATAAGAGTCGCTCTCAGTCCTTTACAAGTAACATGTCTCCAGCAGAATCCCATGTGGCCCTCAAAAGAAGAACAGAGAAGACAAAAGGAGCAGTCCAATCTGGAGTGAGTTTAACCTCCTCAGCTGTACAGAGCGCACCCACTCAGCGGTTTACTATTCCTCTCAAAGGTTCTGATGGTTCTCAGAAAGCTGGATTGctgagaagagagaagagtgaTATTCTAGCCAGTAATTCGAACTTTTCTTCTCGCTCAGCTTCCTCAAGACCATTTGGAAGCGTGGGTCGCAAGTCCAGACTGGCACTGGATTTTGTGTCCGAGTTTCTCAAGGTGTCAAAACCCAGTTCCACAGCGAAGTCCGAGAAGTCTCTATCCTCTACACGCTCAAAGGCTTCCAGCATGGTCTCAGAGCTAGAACCTTCAAAAGCCCTACATACATCCACATCTACCAGTTGTACAGATGAGAAGACCCCTAAAGGTTCCAGGCATGAAGAGGAGGACACCTTGAGTGATGCTGGCACCTACACCATTGAGACGGAGGGACCTGATAAAGAGGTGAATGAGGCGCGTAACATGATTGATCAGGTGTTTGGTGTTCTTGAGTGCCCTGAGTACAGCAGTCAGCCTTCAGCAGCATCAGTgtataggtctgtagagggtgaCAGGGAGGCCCAGGATATCCTTCCACTTAGTGAGAATAGTCCTGGCCCAACACTGGGTCATAATCCAGGCTATAGCGACCCAGCCATGGGTCCAGCACAGGCAGGGTCAGTGGTATTGACTACTGGGGACACTAAATGGGTTTCACGTTGGGCTAGTTTGGCTGACGGCTATTCAGTCTCCGGTCCAATTTCAGGACAAATCGACATTTCTACACAGATGGGCCTTTCAGGTAGAGCTGGACAAATTATTCCTCAGTCTATGCATAACCGAACTAACGAGAGCACAGGAGCAGAGGACGGCCAGACTTTTAGAGCACGAAGAATTCTTCCTCAGTTGCCCACAAGAGGGGAGGGGCAAGTGCCACCACCTAGTATTCATGTACAGTCAGAATCTTACCTGACATATGACAGTGCAGAAAGGAACATACAAGGTTCACTGCAAAAAGATCATCAGAAACTGTACGTCGCGGATGATCTAGATCCAGACAGTCTGAGTGATGCTAGCAAGTCAGATGATGGTTCCATCATAGAGCAGGGTAGAAAAACTAGCACTGGAAAATCAGAAAGGACTTGTTCAGAGTTTAAGGCTGAGACATCATCTAAGCAAGACGTAATGGCAGACCACATGTTAAAGGATCAAGATTGTCCCACAAAGTTCTCCACAGCCACCATAACTAGACAGTACGGCAGCCGCAAGGCTGGTGATTCCAGTGTTTCTCCGTCTGGCAAGGATGCCTCTACATGCATGGAAAACGCTGTGTCGCTCATCAGACAAGAGAGCTTTACCAAACATCGGTCCAGTGATGACATTCACTTTATGAAATTGCCCCATATCTCAAGTCCGGAATCTAGCAACGATACAAATGCATTCAAAGGTGTGTGCAACCAAGACACTCAGTCTTACcttaaagagacagagaatgcACTTGCTGTTTTAGAGGCCAAACTCCAAGTGCAGAAGCATAACCGTGCCTCCTGCCCTCAGGAGGACTCTCTTTCTGGGGAATCAGATGTAGACACGTCCAGTACAGTCAGTCAGCGTAGTGGTAAAAATTCTGGTACTTCTGCCCCTATAAAGCCAGTGATCCTCAGTGAGCtactgaaagggaaaaaaactgcTAGCCAGCGTGCTCAAGAGCAGCTCTCTTCTGGAGATCCTCAGTCTCAGAAGTGCAGGGCCAGTTCAGGAGACAGTAACTATAAGGAATCAGGTAAGACCTCTCAGAGCGCCACCATTCATCAGTGGTCTGATGCTGTTTCAGACCAGGAGTCCAGCTCCCAACCTGTTCATAGAAAGTACACCATCCCCCTTCAGAAAGAAAGCTCTAGGAGATCCCTCAAAGGCACAGTGACCCAGGTGCTAGCTCGCTCTGGCAGCCTTTCTGCACCAAAGCCTACTAGGACGTCCATGCTACGCCGTGCCCGCCTAGGCGATGCATCCGACAACGATGGTACGGAGACTGACCGCACCTCTCAGAACTCTGATGCCAATCCGTCTTCCACCAGAACCCAGGAGAGCAAAAAGCTTTCTCGGCTGGACTTATTGGCTCTGCCGAGAAGGAGAACCGGCTCTTTCACTACACCCAGTGACACGGAGTCCTCAGCTGGTAGGACTGGCTTTTCCAGCCGTTCAGAGGCAGAGTCTGGTTTCTCAGCACGTAAGGcttcagtacctgacctcaagACTGGTACGCAGAGGGGTTCTGGGGCAACAGGCAGGCAACCAATCATCCGTGGGCGATCCAGCAGTGCAAAATATGCTAGCAGTACAGCCAGCTCCAGGAGACGTCAGAAGGGCTCAGACTACGCCTCCACTTCAGAGGAGGAGTATGAATCTAACCATAGCATCGCTAAACATAAACGCTCCCACCATTCAGGAGCCTTGCACAACTCTAGAACCCAGGCCCCTGACCAGGTTCGGCCTCCATCCAGAAGCAGAGACTCTGAAGGGGAGGGACATGAGAGCGAAAATTTCCAGAACTGGACAACTCATAGTGCAGAGATTGCCAGGCTGAGTCAGGACCTGGCTAAAGACTTGGCCATCCTGGCCCAGGAAATTCATAATGTTGCTGGTGATGGTGAACCTCAGAATGCTGCCTCTGTTGATGCTGTGGAACCTGTATCTGCTATATCTGCCTGCAAGGAGTTACGGCAACAGCTTCCTGAGACCAGCATAAACTACTCTAAAGTTCTACAAAGTTCAGCTATGTGCAAGAATCCTGACCAGACTGTTAGTGATCAAGGGCTCAAACACCAGAGCTGGAAACAGGAACAGGTCGCTCTGGATAATTCAATGCTGAATCCTGTCTCCCAACTTTCCATGGCTATCCGAGAAAACACTGAGCAACTGACTGAGAAGCTCAAACTTTTGTTCCACAATAAGGCAGAGGTGTGGGAGGAAATAGAGACAGTGCTCGATGCTGCTGATGATTCTCCACCTTTGGAAAGTCCAAACAAGGAAATAATGTCTATTATCCGAGATCTCAGGGGAATCCAGAAGCGGTTAGAAGTCATCAACACAGTCATTGAACCCAGTGGAAATGTAAGTCTGGTCAAGTCTTCACCTGTATTAAGCCACTCTTCAGCAGGTCTAAGCAGCTTCAGAGCTTCTCCCAGAGACTGGAGAGCCACTGCTTCTCAGCGGGCTGCAGGATCCCCTGCCAGTGCTCGACGCTTTGTTAGGGGGAATGATGGTAGGGTTCTGTAGCATGGGAGTAAGGAAGTCCTTCGTCTCCTACTTTTCTGTATGCCATGTCTACTAAAGCTGCTCTTTTGTACACTAGTGACCAACGGTATGAGAATCTATTATTGGCTTAGCCTTAAGACTGGGGTTCGGTATTAATGTGTACATTTGCACTTGTGCTTGTgtatgtgcacgtgtgtgtatgtgtgtgtttgtgtttgtgtgtgtgtgtgtgtgtgaatgcgagTGAAAGAGCACCTCTTGCACAGCAATACAAGGCTGAGAATACTAAGCTGGTTATTGGGAGTACTAGGGGATTAGGTACAGGCACTTCTGTTGGTGCCATACttgtactgtataatatttataatgacaCTGTATTTCAGTTTAATCATTTTGTTATTCACCCAGTGATTGATATGTggtggtaaaataataaaaaaaaaaggcattaaacattatttaggGTGTTTTATATGACGGGGTCATTAAAGAATGTATTACATGGgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199664 lncRNA downstream 87253 19939816 ~ 19940040 (-) True G168665
TU199660 lncRNA downstream 103106 19923105 ~ 19924187 (-) True G168661
TU199596 lncRNA downstream 139463 19887315 ~ 19887830 (-) True G168608
TU199462 lncRNA downstream 260340 19766754 ~ 19766953 (-) True G168493
TU199433 lncRNA downstream 261566 19763846 ~ 19765727 (-) True G168466
TU199749 lncRNA upstream 40125 20099127 ~ 20100572 (-) True G168747
TU199752 lncRNA upstream 47211 20106213 ~ 20106858 (-) True G168750
TU199758 lncRNA upstream 86265 20145267 ~ 20148736 (-) True G168756
TU199760 lncRNA upstream 90488 20149490 ~ 20149902 (-) True G168758
TU199761 lncRNA upstream 91291 20150293 ~ 20151303 (-) True G168759
XM_026933801.2 mRNA downstream 1657 20019219 ~ 20025636 (-) True LOC113538610
XM_034307799.1 mRNA downstream 8576 20014479 ~ 20018717 (-) False srp14
XM_026934420.2 mRNA downstream 8577 20014479 ~ 20018716 (-) False srp14
XM_026934191.2 mRNA downstream 118546 19891594 ~ 19908747 (-) True zgc:162989
XM_034307953.1 mRNA downstream 118950 19901968 ~ 19908343 (-) False zgc:162989
XM_026934181.2 mRNA upstream 6718 20065720 ~ 20126339 (-) True akt1
XM_026933739.2 mRNA upstream 110128 20169130 ~ 20174078 (-) True siva1
XM_026920002.2 mRNA upstream 143117 20202119 ~ 20212962 (-) True adss1
XM_034308000.1 mRNA upstream 160872 20219874 ~ 20255868 (-) False inf2
XM_026919032.2 mRNA upstream 160872 20219874 ~ 20255868 (-) False inf2
TU199706 other downstream 8599 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 432516 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1060680 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1179597 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1644838 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 263762 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 505927 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 673928 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 755559 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 2056563 22115565 ~ 22115876 (-) True G170023

Expression Profile