RNA id: XM_026934103.2


Basic Information

Item Value
RNA id XM_026934103.2
length 2134
RNA type mRNA
GC content 0.39
exon number 10
gene id slc25a21
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16540840 ~ 16620401 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGTCCAGCTGAATGAGACAAGCCCCAGCTCTGAACAGTGAGCTCTACTGCTGCAGGCCAATCAGCTGTGTTCATACAGTTTAATAGCGTATCAAAACAGgTCTGGTGGAGATATGTCTGATGCATCCGCTGGACGTTGTGAAGACCAGGTTCCAAATTCAGCGAGGAGTGAGTGACCCAAACAGCTATAAAGGCCTGGGGGACTGTTTCAGAACCATATTTCACAAAGAGGGAATGTATGGTTTTTACAAGGGAATCCTGCCACCAATTCTAGCTGAGACGCCAAAGAGAGCAGTTAAGTTTTTCACCTTTGAGCAATACAAGAACCTGCTAAGTTACACTGCCTTATCTCAGGGCCTGGCTCTCTCCCTAGCTGGGCTTGGCTCAGGTTTAACAGAAGCTCTGGTGGTTAATCCATTTGAGGTAGTGAAAGTAAACCTTCAGGCCAACAGAGATTCCTTCAAAGTGCAGCCATCCACATTTACCCAGGCTCGAATGATCATTAATTCAGATGGCATTGGTCTGCGTGGGCTAAATAAGGGCCTGACCTCCACACTGGGTCGCCATGGCGTCTTCAACATGATCTACTTTGGCTTCTACTTCAATGTTAAAAACACCCTTCCTGCCAGCCAGGATCCTCGTCTGGAGTTTATGAGAAAGTTTACTATAGGTTTGCTGGCAGGAACCATCTCATCCTGTGTGAACATCCCCTTTGACGTGGCTAAGAGCCGTATCCAGGGTCCCCAGCCAGTCCAAGGGGAGATAAAGTACAGGAGCTGTTTCCAGACCATGGCTCTGGTATACCGTGAAGAAGGgtATCTTGCATTATACAAAGGACTAATTCCCAAGATCTTGAGACTTGGACCAGGAGGTGCTGTCATGCTGCTAGTGTATGAGTATGTCTCCGGCTGGCTGCAAAGAAACTGGTGATAAGAGCTGTCAGGCAGCAGACAAATTTCACTCTGTGGGTCGCAAGTACATGCATGCATCGGCTATCAAAATCATGCCAGTGTGTTCTaagataaaaaggaataaaGCGGCTTAATAGCAATTGTTGACCAGGATTAGCCCTGAACTACAAAATGATATGTTATATCTTATTACATATCCTATCTCATTCTGCTCTCACTGATTTTGAgagaaatataaacattttcttatgaGGTATTCTTATGTGTGATGCTAGGATGTCAAGGGAAGTTAATATgcactggtactggtactggtcCTGTAACCACAGAAGCATTTCACACCCGAAACAAAGCCTGCAGTCTTTTACACTCACCACTAGCAGGAAATGGGATCAAATTCAGCTTACATTAAAGCAAGTTTAAGGCTCTTGTCTATTTCTAACTTCCTCTCTGATGGAACACCACCAAAGAATCCCTTTTAGCTCCAAAAAGTGTACTGATGAGGGTGGAGTTGAGCTCAGCAATATGTTGTTAAGATGTTGTATCAGATGATTAGTGATAATTCAGAATTTAACACAAGTCAATACTCATTTTTATGTATCAAGTCATTATTTGTGAATTGTGAATGAGGCAAAAAGTATgtcatatttcttttcttcatgaTTGCTTATATgtagcattttaattttacattaatcTTAATGTGTGATGAACTTGATAGCAATTATGTGAgtattgaatttaaaaatattttattgaatattgctttttttttattcattatgtaaATGATATTTGAATAGTTTACAATGTTTCACAATGTTTGCTACTAAATATGCCTAAATATGCCTTGTAAACACAGGCCTTGAATAGCTcttgatttttaattatgtttaaaatgtcatagATCTATTGGAAACTGATTAAATGTGAGTCCTATTCCTTCTAACTCTGCTTAATGAAGGCACAGTAAAGAATGAAAATTAGAAGTAATAGGGAGACGAgggaaaatttttttaaacagtttgtgcACTAATgaaatttacatatatttacacatattgTTACTGGTCATATTTCTGGAAATAAACATTCaaagaacataaataataaaataagatgtTATGTGTATTTGATTTCGCAATGCACCTGGCAAAAAGTCTTTCACTGAAATGTTTGTTGGAGATCTTTGAAATAAAATTCTTGGATTTTCGTTctgata

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197311 lncRNA downstream 96766 16444841 ~ 16446005 (-) True G166633
TU197138 lncRNA downstream 275256 16267229 ~ 16267515 (-) True G166484
TU197027 lncRNA downstream 542259 16000219 ~ 16000512 (-) True G166390
TU197013 lncRNA downstream 609334 15933157 ~ 15933437 (-) True G166380
TU196943 lncRNA downstream 646201 15895667 ~ 15896570 (-) True G166319
TU197551 lncRNA upstream 124229 16744606 ~ 16744822 (-) True G166865
TU197619 lncRNA upstream 218704 16839081 ~ 16861229 (-) False LOC113538645
XR_004578933.1 lncRNA upstream 220057 16840434 ~ 16860820 (-) False LOC113538645
TU197613 lncRNA upstream 240461 16860838 ~ 16865427 (-) True LOC113538645
TU197616 lncRNA upstream 240461 16860838 ~ 16865427 (-) False LOC113538645
XM_026934511.2 mRNA downstream 27591 16513235 ~ 16515180 (-) True nkx2.9
XM_026934315.2 mRNA downstream 34256 16505893 ~ 16508515 (-) True nkx2.1
XM_026933734.2 mRNA downstream 51726 16479179 ~ 16491045 (-) True mbip
XM_026933733.2 mRNA downstream 51726 16479182 ~ 16491045 (-) False mbip
XM_026934342.2 mRNA downstream 121986 16409811 ~ 16420785 (-) True cdan1
XM_026934346.2 mRNA upstream 6578 16626955 ~ 16657370 (-) False plekhh1
XM_026934345.2 mRNA upstream 6578 16626955 ~ 16657370 (-) True plekhh1
XM_026933818.2 mRNA upstream 141211 16761588 ~ 16775576 (-) True tmem229b
XM_026934426.2 mRNA upstream 156326 16776703 ~ 16811216 (-) True mta1
XM_026933870.2 mRNA upstream 253313 16873690 ~ 16898730 (-) False mideasb
XR_003403899.1 other downstream 526287 16016352 ~ 16016484 (-) True LOC113539022
XR_003403876.2 other downstream 780053 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 879276 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 879276 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 1220767 15304623 ~ 15322004 (-) False pgfb
XR_004578948.1 other upstream 625562 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 625562 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 1685366 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 1685366 18305743 ~ 18316207 (-) False G167566
TU198375 other upstream 1758520 18378897 ~ 18382455 (-) False gdf7

Expression Profile