RNA id: XM_026934181.2


Basic Information

Item Value
RNA id XM_026934181.2
length 4292
RNA type mRNA
GC content 0.43
exon number 14
gene id akt1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20065720 ~ 20126339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGAAAACTCTGGCAGCGCATTCATAAACCATGATTAGCAAAAAGGAAGCTCAGAAAACTTAACAGAGcatgctgtttatttgaagacCATGTTAAATTTTTGGcactgttttcagtttcagggtgtttttcttttttctcactgtatatttttgttcgGTTCTTGAAAAGTTACAGTCAATACCATTTTTTGGCACAAGTATAACTCCATGCCTCTGAGCGCACGTGGTTGTTGAGTGGTTCTGAGGAAATCAGGCCGGCGCTAGGACCGCGGCGTCGTGCTTAGTGGCAGCAGCCCTGCAGAGCCAGAGCCGTTTGGGAGGCGTAGTGGAGCAAAGGCAAAAGGGGAGCGGGGTAAATGAAAACACTTTACCTGGCCTTTTTCTGTGGGATTTAGCAGCCTGCGAAAATCGCCTGACGCCACCAGGGCAATGTTCCGGAGGCATTTTTGATTTGTCGTCGAGGTAACCTTTGAGAAGAGGCTCCTTGCCCAAGTGAAGGAGATTGTGGGCTTTGGAGCTGCTGCTCTCCCTCTGAGACGCTGACTGTCTTCCTCTGTCCAGTATGACGGACGTGGTGATCGTGAAGGAGGGATGGCTCCACAAACGAGGAGAGTACATTAAGACGTGGAGGCCGAGGTATTTCTTGCTGAAGAATGACGGTACGTTTATTGGTTATAAGGAGAGGCCACAGGACGTGGACCAGCTAGAGACGCCGCTCAATAACTTCTCTGTGGCACAATGTCAGCTGATGAAGACGGAGAGGCCGAAGCCCAACACATTTATCATCCGCTGCCTGCAGTGGACCACTGTTATTGAGCGCACGTTTCATGTGGAGACCCCGGAGGAACGGGAGGAATGGACTAAAGCCATCCAGGCTGTGGCTGACAGTCTGCAGAAACAGGAAGAGGAGATGATGGACTCTTCTCCTGACCCCATGGACATGGAGATGTATCTAACCAAACCTCGGCACAAAGTGACTATGCATGACTTTGAATACCTCAAACTCCTTGGGAAAGGCACTTTTGGCAAAGTCATCCTGGTGAAGGAGAAGGCCACAGGAAAATATTACGCCATGAAAATCCTTAAGAAGGAAGTAATTGTAGCAAAAGATGAAGtggctcacacactcacagaaaaCCGCGTCCTCCAGAATTCTAAGCACCCTTTCTTGACGGGGCTGAAATACTCGTTCCAAACACACGACCGCTTGTGCTTCGTCATGGAGTATGCAAATGGAGGAGAGCTTTTCTTCCACTTGTCACGGGACCGGGTATTCTCTGAGGATCGGGCACGGTTCTATGGAGCAGAAATCGTTTCTGCACTGGACTATCTGCACTTGGAGCGGAACGTAGTTTACCGCGACCTGAAGCTGGAAAATCTGATGCTGGACAAAGACGGCCATATAAAGATCACTGACTTTGGGCTTTGTAAAGAGGGCATAACGGACGGAGCCACTATGAAGACCTTCTGCGGCACCCCTGAATATCTGGCTCCTGAGGTGCTGGAGGACAACGATTATGGCCGTGCTGTAGACTGGTGGGGCCTGGGCGTGGTGATGTACGAGATGATGTGCGGCCGCCTGCCCTTCTACAACCAGGACCACGAGCGCTTGTTTGAGCTCATCCTAATGGAGGACATCCGTTTTCCACGTACACTCGCCCCTGAGGCTAAATCGCTGCTCTCTGGCCTTCTCAAGAAAGATCCCAAACAGCGGTTAGGAGGTGGGCCTGATGATGCGAAAGAAATCATGCAGCACAAGTTTTTCGCTGGAATTGTGTGGCAAGATGTTTATgagaaaaagCTGATTCCTCCGTTTAAGCCCCAGGTTACCTCAGAAACAGATACGAGATATTTTGACGAGGAGTTCACTGCACAGACCATCACTATCACACCACCGGGAGAAGatgAAAACATGGAGCCGTTCGACAGTGAGAGGAGACCCCACTTCCCCAAGTTCTCCTACTCTGCCAGTGGAACGTGCTAGACAACCCTTTTCCCGTATCAGCCTCCGCGCCACTGAGTCCAGCGCCCCCTGCCGGGTGCTTCGGGTAGCTGTTGCTCTTTTGCACCACTGACCAACGACACATTTCCCCCTACAACCCACAGCCTGGCCTAAGTGTACAGGCAGCCTTCTCCTGGATTTCATCCGCTTCAGATCGTGGCCCTTTCATTATTTTGGTTTGCTTTACATTTCATAATATTGTGAACGATAAACATCAACCTTCTAGCAATTTTATGTTTCCTTTGTGGCcttctaatgattttttttttttttttcctgaggaTATGAGAAggaacacacgcgcacacacacacacacacacacacacacacaaatgaatacATCAGCTGACAGGTTTTATAGCACTTCATAAACAAAGTCAGATATTTACAGTAGATCTAATGAAATGCCAAATATActtgttttacttttatttaaaaaaaaaaaagaagaccaATTGTTTGGACCAACTGAAACCtttctacatttttatacactgaAAGACTGAATTCAAGAAAATGTCTTGGAAAAAGTGTAACGCAGCATTTCAATTAAGCAGAACCTTGCCTAGCCGGTATGAATATCAGTTCACTTCTAGATGTATGGACTGGAATTGCTTTAGCCCCCCGCTTCAGGCTAAAAATTTACCCTGCATTCATAATCATTTGTACTAAATGTgcaatactgtagcaaaataaTAGATAGATTTTAGTATCGTGGTTAAGTTTGAAACAAAGCCAATTCAGTCTTTaggaactgattttttttttccagtcctcAAAGCAGTCAGGAGTTGTTCTCAttttaataacttaaaaaatgcacagataCATCCAACCATTCTGGACTTGAACATTATCCCACATGCAATGTATTTTATAATCTTGTTGTCTGGGTACTCCTCTTCCATtctcctttctcttctttcctaCTTCcattttttggttgttttctgTATTAAGTGCATTATTTGCAGTGCACGTTGCACAGCCTCAGTGAGGTACTACAGCTAGAACTACTCTAACAACTTTAGGGACTTTCGTACAAGTTTGGCTTTGAATCCAAGGGACCCGAGTGGCAGAACCAGCTTCCGACCTTTTggactgtcttttttttttttttttttaaacctggaTGTgttcaatatttatatattaaaaaccaGCAGATTGACTGTGCAGGACAAGTCCTCTTCCCTGCTTCAGATGTTGTTACGTTTGTACATTTCGGCATTACTCATACCGTAGAGGAGCTACACGTAAAACTAAACATGTGGTGGTGCTTTAGCTCGCAAAGTCGGCCGTTGTTTACCATCCAAAGCCGCTGAGAGTATTTGAGTCTACATATTTGCTCTGTTTATTTGATTAATGTGTTCGAGGCATTTCCAACGATAAACGCAGCCACACTTTTCATGGTTTTACAGGCTCTCGCACTTAAAATGCTGATTTAGAAAGAGCTATGGAATGAGCTACAATGAAACATGGTTATGAgtgtaatttaatttgattatgAAGTCTctaatgaaaggaaaaaaaaaagtacctggAGCTCCTTTACGCTTGAAGGTGACATGAACCAGCACATCTCTCCATTAATCTATTGCAAGGTGTAAATACCGTGAAATTGTTTTCAGATACAATCCAGTACAGTGCATGTACAGATACTGAAATGAGACTTGTACAGTTATAGAATCTGTTAAGCTAAGCATCATGAACATGTCTTTAAAAGTGactctttttttattgtcacaATTTTTAAGTGCATTACTCTGATCAGTGTTCAGATTTCACGTAGTAATCATCAGGCTAAACTTCAACATgagtaaatgaatgtaaatgcttTTTCcctcttcactttttttttttttttttttttttttaaaccttaacttttttcctgtttaaagaAGCGATAAGTGACTTTGTTGCATATAATTGGTCCCCATGCCTATTTTACCATGATATAAATACAGGTAACTGGCATGTGGTCAGACCACAGAAAAGAATGAGACATGATGGTTTATTCCCACCTTCTAACATTCCACACTTATGTATTACGTATAAATCTACTTATTGCTTCTTTAAGACCCAGTTGTTACATATGCATATGTTTTCTCATACTGTTATCTTTTTTTGAAATGGGGAGATATTTTGCTTTTTAGCTGCCTTTCCTCAACTCTCTAAGACACAAACTTTAGTATACGAATAATATAAACTTTGTATGCACATCTGTTTATAGGGCTTCAATTTTTCTGTGGAATTGAGCAAATAAAAAAGTTTGGCTAAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04456 AKT; RAC serine/threonine-protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199664 lncRNA downstream 125680 19939816 ~ 19940040 (-) True G168665
TU199660 lncRNA downstream 141533 19923105 ~ 19924187 (-) True G168661
TU199596 lncRNA downstream 177890 19887315 ~ 19887830 (-) True G168608
TU199462 lncRNA downstream 298767 19766754 ~ 19766953 (-) True G168493
TU199433 lncRNA downstream 299993 19763846 ~ 19765727 (-) True G168466
TU199758 lncRNA upstream 18928 20145267 ~ 20148736 (-) True G168756
TU199760 lncRNA upstream 23151 20149490 ~ 20149902 (-) True G168758
TU199761 lncRNA upstream 23954 20150293 ~ 20151303 (-) True G168759
TU199899 lncRNA upstream 172202 20298541 ~ 20301554 (-) False LOC113529462
TU199937 lncRNA upstream 316658 20442997 ~ 20443772 (-) True G168908
XM_034308017.1 mRNA downstream 6718 20027293 ~ 20059002 (-) False cep170b
XM_034308018.1 mRNA downstream 6718 20027293 ~ 20059002 (-) False cep170b
XM_034308019.1 mRNA downstream 6719 20027293 ~ 20059001 (-) False cep170b
XM_026933905.2 mRNA downstream 6719 20027293 ~ 20059001 (-) False cep170b
XM_034308014.1 mRNA downstream 6719 20027293 ~ 20059001 (-) True cep170b
XM_026933739.2 mRNA upstream 42791 20169130 ~ 20174078 (-) True siva1
XM_026920002.2 mRNA upstream 75780 20202119 ~ 20212962 (-) True adss1
XM_034308000.1 mRNA upstream 93535 20219874 ~ 20255868 (-) False inf2
XM_026919032.2 mRNA upstream 93535 20219874 ~ 20255868 (-) False inf2
XM_026919030.2 mRNA upstream 93535 20219874 ~ 20255868 (-) False inf2
TU199706 other downstream 47026 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 470943 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1099107 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1218024 18843803 ~ 18847696 (-) False LOC113538624
TU198375 other downstream 1683265 18378897 ~ 18382455 (-) False gdf7
TU199915 other upstream 196425 20322764 ~ 20330744 (-) True gchfr
TU200198 other upstream 438590 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 606591 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 688222 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1989226 22115565 ~ 22115876 (-) True G170023

Expression Profile