RNA id: XM_026934258.2


Basic Information

Item Value
RNA id XM_026934258.2
length 1319
RNA type mRNA
GC content 0.39
exon number 7
gene id haus2
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18822276 ~ 18825221 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATTCAAAATTCCATTTTGTCTAACAGACGCTTCGGGTCTGagcaagtttttttgtttgtttgtatgttttaaagTAACCTAAACTATAAACAGTGTCTGGTGGTACCGAAAACATGTTTTAGAGGAAGGAAGAATAGCGTTGGATGATCAGACTGTCCGCTTCCAGGCTTGGATACAAAAAGCAGGTCATATTCTTTCTTCATGGATACTTGGGAACTAAATCCTCACTCAGTGACTCCAGCAGCGAAGGTCCTGGCGAGATGTGTAGCCTCAGGCATAATGTCTCAGAAAGAGCTTGATGATGTACCACGAGGCCCAGAGATATTTTCCTCTCGTCTGCTTGAAATTGAGcaactgaataaaatcaaacaagaGATCGACCAGGTGAGCTTGGACTTGGAGCTGCTAAGACTTGAGAAAAACAGTGCAGATGTTACTCACAGTTATTATCTAAGTCAGAGATTTGCATCCTTGCAGCAGTTCACGTCTCATCTTCAGGAAGTGCTGAGAGAACAGACAAGTTTGCGTCAAAGGCTTATGAAACCTCTTTGCCAGCAGAATCTGCCTGTACAGGCTGATCTTCATCGGTATGTGGTCACACTCATGGTGATGGTGGTTGAGTTCATTGAGACtttggaaatgaaaatgaagataGTTCACTCAATTCCAACAAGTGATGAATCTATGCGTAATCTGAATAATGGCATGACTCAGCTCCTGGCTCAAGTCACAGAGGTGGAGAGTCTGACGAAGCAAGTTCTTCAGTGGAGTGGCAAGCCAAAGGACAATATGTCCAGCTGAGAAAATGGTAAACTGCAGGCCCCATCCAACAGACATGACAAATGTGTTGTCACTGTATTATCACATTAAAAGTGTAATTCATTAATCATTGCTTTATTAACAAGCTGTCATCTGTCTTTATTTACTCTTCAGTTGGAGTGGTACGACCACTGTTGGCTTGTGGTTCCTCTTGAGTGTCAAGGGAACTTCCAGTATAAATAGTTACTGAAATCTAAAGATAGGTGTtgcagaagaacagaaaaaacagtAATGTACACAGTCcttgtaaatattttgtgtgttatgtatgaGTGGTTTACTTTTGTTCcttaatgcataaataaataatactttttattacAAAGATGGGCTTGTTTTGGGCTAAACTATGAATAAGCATAATTATTACCACAATTAATTACATACATATCGAAGACATTGTAAACTGATATAATACCTGACTGTCTGGACCATCTGCTGATCAATTCTTCACTGACGAGTGTGTAtctgcaatataaataaaattacatgcctaaa

Function

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:0070652 HAUS complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198742 lncRNA downstream 19583 18802441 ~ 18802693 (-) True G167883
TU198652 lncRNA downstream 220962 18600331 ~ 18601314 (-) False bahd1
TU198648 lncRNA downstream 225390 18596581 ~ 18596886 (-) True G167802
TU198632 lncRNA downstream 250383 18571503 ~ 18571893 (-) True G167786
TU198626 lncRNA downstream 257897 18563971 ~ 18564379 (-) True G167783
XR_003403878.2 lncRNA upstream 455306 19280278 ~ 19285841 (-) True LOC113538783
TU199245 lncRNA upstream 494866 19319838 ~ 19426679 (-) True G168304
XR_003403864.2 lncRNA upstream 616117 19441089 ~ 19449728 (-) True LOC113538592
TU199297 lncRNA upstream 669091 19494063 ~ 19498688 (-) True G168354
TU199352 lncRNA upstream 761370 19586342 ~ 19586548 (-) True G168399
XM_026934459.2 mRNA downstream 22847 18778480 ~ 18799429 (-) False rpap1
XM_026934458.2 mRNA downstream 22849 18778480 ~ 18799427 (-) True rpap1
XM_026934534.2 mRNA downstream 69489 18683805 ~ 18752787 (-) False ltk
XM_026934533.2 mRNA downstream 69489 18683805 ~ 18752787 (-) True ltk
XM_026934441.2 mRNA downstream 155956 18659288 ~ 18666320 (-) True ivd
XM_026933830.2 mRNA upstream 14643 18839615 ~ 18847690 (-) True LOC113538624
XM_026934200.2 mRNA upstream 32063 18857035 ~ 18866636 (-) True znf839
XM_026934282.2 mRNA upstream 47380 18872352 ~ 18881325 (-) True vsx2
XM_026934283.2 mRNA upstream 47380 18872352 ~ 18881322 (-) False vsx2
XM_026934540.2 mRNA upstream 63193 18888165 ~ 18900853 (-) True lin52
TU198375 other downstream 439821 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 506069 18305743 ~ 18316207 (-) True G167566
TU198372 other downstream 506069 18305743 ~ 18316207 (-) False G167566
XR_004578948.1 other downstream 1574457 17245939 ~ 17247819 (-) False htr1b
TU198855 other upstream 18831 18843803 ~ 18847696 (-) False LOC113538624
TU198915 other upstream 136736 18961708 ~ 18966613 (-) True G168015
TU199357 other upstream 765096 19590068 ~ 19594777 (-) False LOC113538862
TU199706 other upstream 1188607 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 1497792 20322764 ~ 20330744 (-) True gchfr

Expression Profile