RNA id: XM_026934292.2


Basic Information

Item Value
RNA id XM_026934292.2
length 2590
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC113538872
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19837258 ~ 19839847 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGAAAACCGAGACAGTgctgagccacacacacacacacacacaccagcacctGTGAGACTTCTCCCAGAGAAGAGGCGCTGTACCATGCTGAGGCCAAAGGACCTGTGCCAGGGCTCTGGCACCAAAACCTTCTTGGAGGCGATGAATAGTGGCAAGGTGCACCTGGCCCGCTTTGTGCTTGATGCACTGGACTGCCGCATCATCAACTCAAAGAACGAGAGCAGCCGCACGCCACTTATGTGCGCCGTGTGCCTGCAGGAGCAGAGCACCAGGTCCAAGTTCACACAGCTGCTCCTGGAGAAAGGTGCCGACGTGAACAGCCGGGACGAGCACGGCCGCACCGCCCTCAGTTTGGCCTGCGAGCTCGGCCACCTAGATGCTGTCAAGCTCCTGGTGCAGTTCAACGCCAACCCTGAGCTCACTGACACCTGGGGCAACAGCGCCCTGACGTATGCTGCCTACGGAGGACACAGCCAGGTCCTGGATTTTCTCATTCGGGCTTTCAAGAGGCTCGGACTGAGACTGGACCACACTAATCATGCAGGCCACACTGCCATCCAGGTAGCAGAATATTTGGGACATGCCAATTGTGTTCAGGTGCTCAACACTGCAGGGAAGAAGGGAGTCTGCAGCATTGAGCAAACTCACGAAATCAGAGGTGGATCACATGAAGCTGTTTCCTGGCCTAATCGACTCCCGAAGCAAATTCTGGAAAAATTCTCAAAGCAGGTTCACAGCAAGAATGAAGAGCCACTGCCATCTTTGTTTCAGAGGCAGATGTGGATCAGTGATGGCAAAGACCTAAACAGACGATTCAGTCAACAGCACTCCCCTGAAAGAACCGACTCAAGCGGCTACCAAAGTTTAACCAGGTTCCCAGAGAGGCGTTTCACTGAGAAGGAGCAACATGTCCTGTTCAGCTCGAAACAGTTTCAAAACTCTAGAGAAGCTGGCTTTGTGAGAAAAAACAACTTCGTCTCAGAGCGCTGCCAGAATGCGGACCACCATGAGATGAGGGAAAATCCGCCCCAGTGGGGAAAAGCAAAGTCATTCAACCTGGACCTCCAGACGGGACGAAAACAGTCGTACCAGGGCGAGGCGCGTGACGTCACACAGCCTGTCAGCCAATTGAAAAGAGCTTCTCTTCCAGACGAGAGACCTCTCATCCCGAAATTCTACTGCCATGGCAACACTTCCGCGAAGAAGAGCGACGTGGACAGAGCGggtttacaacaaataaacGGAGTTTCTCGGGTTAGTGCTGAGCAGCGGAACAGCGACAActctgaaaagaagaaaagctcGATAAAGCGAGGTAGCGTTGTCAAGAACGAAAGACCGAATAAACTGCTCTTCTGTCGGGACGAGGTGCCACGGGAGAGGCTCAGAATCCGGCCGCCGGGCTTCGACGGGCTCGGGACCAGGTTACTGCGCCGCTTCACAGCTCCTGAGTTCATGGGACTGGTGAGAGACTGTCAGTCCGGCGTGACGTTAAAGAAAGGCAAGATTGCTCGATCAGAGACATTtcccctttcacacacacataaactggTAAACAGTCAGCCTAGCATTGATAGCATAAGCGGCGTCAGGTGCGAATTTGAAGGCAGTCCTCCAGTCAGCCGAGCTtaatctatattattattattattattattcctggAGTTGGGAATCGATGGAGTCGGTTCCTCACAGGAAAAGCAGATATTGTGAAATAAATGGGTGCAATATTAATTAAGTGAATTTTAAAGcatctcctttttctttctttctttctttcttttcacttcacgCCTCCTTTGAGAGAACTTGAGCCGAATCACTTTCCCTGTATGGACTTGACTCCTAAGCTTTGGAGTCGACTCTCCGTTTCCAGCGCCTGGCATCACAGAGTCGACTCCCAGTCCTAGATTTACTTCTCCAAAGCCAttagaaatgaaaaagcaaCAACACAGGGAGCACATGCAGGGATTTCACTTGTTTCAAGCTGCTTTGTTAAACACCATCATGAACAACACTAGATAAAATTGGAGTTGGAGAGGAAAGCaacttgcttttgtttttgtttttgttttttttttgttggttttctGATAAAGGCAGTTTGGATCACCACCAGTTTCATGTCTCTCAGAACTGTTACAGTCGTGGCGAAACTTTCCTCACAGTTACACCATTGTAAATAACCAGACAATGcttaaaattcatttataaagcaAGTAAATGTGCTACATAATACATAAATGCACTGTCTTTGATTATGTATACATGTTATGTGCACTTCAGGAGCCAGGCAGGGTCACAGGTTTTTGTAAAATTGTCTTATTGCTCTTCATAATTAGTACTGTAAGTTTAAAATATTCCTCTATATATTCTCTAATATACATCCACAAGCTTAAGGCAGTTGAAAACATGTACAAAATCTGCTGATACTCATATCTCAGACATTACAGGTTTAAATGTATATGGTGTCTCAAAcatctccatacataggggaaattaacactttttagcaaaatgtcactttatttaaaaaatcctcttcatgattgccatttctttgtaagcactcatgatgaactcgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199473 lncRNA upstream 62592 19772890 ~ 19774666 (+) True G168504
TU199406 lncRNA upstream 73913 19722780 ~ 19763345 (+) False LOC113538915
TU199117 lncRNA upstream 149667 19682976 ~ 19687591 (+) False G168191
TU199143 lncRNA upstream 240291 19596423 ~ 19596967 (+) True G168207
TU199088 lncRNA upstream 312403 19523154 ~ 19524855 (+) True G168175
TU199571 lncRNA downstream 48080 19887927 ~ 19888154 (+) True G168585
TU199619 lncRNA downstream 147801 19987648 ~ 19987870 (+) True G168630
TU199621 lncRNA downstream 178914 20018761 ~ 20019038 (+) True G168632
TU199622 lncRNA downstream 179310 20019157 ~ 20020371 (+) True G168633
TU199623 lncRNA downstream 180787 20020634 ~ 20021068 (+) True G168634
XM_026933767.2 mRNA upstream 27999 19778568 ~ 19809259 (+) True plcb2
XM_034308156.1 mRNA upstream 70677 19723910 ~ 19766581 (+) True LOC113538915
XM_026934352.2 mRNA upstream 70677 19723910 ~ 19766581 (+) False LOC113538915
XM_026934353.2 mRNA upstream 70677 19726463 ~ 19766581 (+) False LOC113538915
XM_034308225.1 mRNA upstream 167711 19646283 ~ 19669547 (+) True mthfd1b
XM_026933703.2 mRNA downstream 39888 19879735 ~ 19886509 (+) False zfyve19
XM_034307819.1 mRNA downstream 73496 19913343 ~ 19922486 (+) False LOC113538658
XM_034307817.1 mRNA downstream 73496 19913343 ~ 19922486 (+) False LOC113538658
XM_034307818.1 mRNA downstream 73632 19913479 ~ 19922486 (+) False LOC113538658
XM_034307821.1 mRNA downstream 73786 19913633 ~ 19922486 (+) False LOC113538658
TU199111 other upstream 149667 19674913 ~ 19687591 (+) True G168191
TU199113 other upstream 149667 19679315 ~ 19687591 (+) False G168191
XR_004578955.1 other upstream 1465287 18330468 ~ 18371971 (+) False ldah
XR_003403895.1 other upstream 1517182 18319970 ~ 18320076 (+) True LOC113539017
XR_004579004.1 other upstream 1911238 17925706 ~ 17926020 (+) True LOC117598336
XR_004578946.1 other downstream 39888 19879735 ~ 19886509 (+) True zfyve19
XR_004578926.1 other downstream 73786 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other downstream 73786 19913633 ~ 19914709 (+) False LOC113538658
TU199644 other downstream 202630 20042477 ~ 20042935 (+) True G168650
XR_004578908.1 other downstream 681748 20521595 ~ 20531222 (+) False LOC113530103

Expression Profile