RNA id: XM_026934315.2


Basic Information

Item Value
RNA id XM_026934315.2
length 2088
RNA type mRNA
GC content 0.48
exon number 2
gene id nkx2.1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16505893 ~ 16508515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAGGCGGACTTCACGCGCCCTCTTACGTGTCTATCTCGCTGTGTCGACGCTGAAGCAACAGGAACAGAGGAGCTGgccaaaaaagaagaagaagaagaagaagaagaagaaggacagGTTCCTTTGCCTTCTGATTTCTCCAACACAGAACAATGTCGATGAGTCCTAAGCATACGACTCCTTTTTCTGTGTCCGATATCTTAAGTCCTCTTGAGGAGAGCTACAAAAAAGTAAGTATGGAGGGGAACAGTCTGGGGGCTCCTCTTGCCTCGTACCGGCAACCGCAGGTCACACAGGCAGCGATGCAGCAGCATCACATGGGCCACAACGGAGCCGCTGTGCCCGCTGCCTACCACATGACAGCCACAGGAGTGCCACAGCTGTCCCACACGGCTATGGGAGGCTACTGCAACGGCAATCTGGGCAACATGAGCGACCTGCCGGCTTATCAGGACGGCATGAGGGGCAGCACGACAGCCACAAGCTGGTACGGAGCAAACCCTGACCCGCGCTTTTCTACCATCTCTCGCTTCATGGGCTCCTCTTCCGGCATGAACATGAGCAGCCTCGGCTCCTTGGCAGATGTGGGTAAAGGCATGGGATCCCTGAGCAGCGCGCCGAGGAGAAAGAGACGCGTGCTCTTCTCGCAGGCGCAGGTCTATGAGCTCGAGCGCCGCTTCAAGCAGCAGAAGTACCTCTCGGCGCCGGAAAGGGAGCACCTAGCCAGCATGATCCACTTGACCCCGACCCAAGTGAAAATCTGGTTCCAGAATCACCGCTACAAAATGAAAAGGCAGGCCAAAGACAAAGTGTCCCAGCAGCAGATGCAACAAGAGAGCGGTTcttgccagcagcagcagcagcagtctcCGCGGCGGGTAGCCGTGCCCGTGTTGGTGAAGGACGGCAAGCCGTGCCAAGGCGGCGGCCACACTCCTACCAGCGCGGCGCAAAACCATCACCACCAGGGCGCCAACGTCATGCTCATGGCTAATAATGGCGCAATGGGCCAGCATCCGAGTCAGCAGGTAGGCAGCGCGGGCCAGTCTCCAGATTTGGGCCAGCACGGTACCAGTCCCTCTTCTCTCCAGACTCAGGTGACCGGTCTATCACACCTGAACTCCTCTGGCGCCGACTACGGCACGGCCTTGCCCTGTTCCGCTCTGCTGTACGGCAGGACGTGGTGACGACAGGACAGACCACAGACGGATAGACAATATCTGTAGGCTATGTGACCTCGACGTCTGCTTTGACCGAGtcaacagcaacacacacacacacacacacacacacacaaatgaaatactCTGTAACCGTTTTGAACAGCCCGGCTTGTCTGTTTACTTTCCTCCGTCCTCTCAAAATCCAGACTGGAAAGGTGGAGGGGGGAAAATGTTGATCAATGCAGAACGAGAAAAATAGCCTTTTCCCAGTCTTTATATGAGGATGTGCGTCCAAAGATGGCGAAGAAGATGGAATTATTTATATAGCTTTTAAGCGGAgacaatatataaaaatcacatcatCCCGACGGATGAAGTAAAAAGCCTCAGTTGGCACTTTAAGACGCCGCCTCCCAGTTTGACTGCTTCAGTACACTCCTGATTCTTATAGATTGCAATGTAAGCCGTAGCGTGTACATTCCTGTAAACGGTTTGGATTTAATACATAGTTTTTAGcgatatgtatatgtataaaatttTTTATCGATATTAAGGGTTATATGTTATTTGAGTTCCACTGGTATTTGTACGTTTCATTTTCTTGTAACTTATAGATATTTGACTTAAGCGCAGTCATACaatcatattaataaattatgaaaaatgatacACATTCTTATTAGAATTGGTTGCAAGCATTAATACGGTGTCACTTAACCAAATTAAactaactttaattttttttttgtcataaattTTGATAAAGTTTGTGAAGACTTTTAATTACACCTAAATATATCAATGGGAATAAATAGCCTATGCTTTCTGCAACagggatttattttataatattcagGATTATGACGACCAGGACACATTTCCTGCAGTGAGTCATATTACTCTATTTTTCCAAATTACAAATt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09342 NKX2-1, TITF1; homeobox protein Nkx-2.1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197311 lncRNA downstream 59888 16444841 ~ 16446005 (-) True G166633
TU197138 lncRNA downstream 238378 16267229 ~ 16267515 (-) True G166484
TU197027 lncRNA downstream 505381 16000219 ~ 16000512 (-) True G166390
TU197013 lncRNA downstream 572456 15933157 ~ 15933437 (-) True G166380
TU196943 lncRNA downstream 609323 15895667 ~ 15896570 (-) True G166319
TU197551 lncRNA upstream 236091 16744606 ~ 16744822 (-) True G166865
TU197619 lncRNA upstream 330566 16839081 ~ 16861229 (-) False LOC113538645
XR_004578933.1 lncRNA upstream 331919 16840434 ~ 16860820 (-) False LOC113538645
TU197613 lncRNA upstream 352323 16860838 ~ 16865427 (-) True LOC113538645
TU197616 lncRNA upstream 352323 16860838 ~ 16865427 (-) False LOC113538645
XM_026933734.2 mRNA downstream 14848 16479179 ~ 16491045 (-) True mbip
XM_026933733.2 mRNA downstream 14848 16479182 ~ 16491045 (-) False mbip
XM_026934342.2 mRNA downstream 85108 16409811 ~ 16420785 (-) True cdan1
XM_034307994.1 mRNA downstream 97751 16379857 ~ 16408142 (-) False stard9
XM_034307993.1 mRNA downstream 97751 16379857 ~ 16408142 (-) True stard9
XM_026934511.2 mRNA upstream 4720 16513235 ~ 16515180 (-) True nkx2.9
XM_026934100.2 mRNA upstream 32325 16540840 ~ 16620401 (-) True slc25a21
XM_026934101.2 mRNA upstream 34256 16542771 ~ 16620401 (-) False slc25a21
XM_026934098.2 mRNA upstream 34256 16542771 ~ 16620401 (-) False slc25a21
XM_026934103.2 mRNA upstream 34256 16542771 ~ 16620377 (-) False slc25a21
XR_003403899.1 other downstream 489409 16016352 ~ 16016484 (-) True LOC113539022
XR_003403876.2 other downstream 743175 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 842398 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 842398 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 1183889 15304623 ~ 15322004 (-) False pgfb
XR_004578948.1 other upstream 737424 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 737424 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 1797228 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 1797228 18305743 ~ 18316207 (-) False G167566
TU198375 other upstream 1870382 18378897 ~ 18382455 (-) False gdf7

Expression Profile