RNA id: XM_026934342.2


Basic Information

Item Value
RNA id XM_026934342.2
length 4751
RNA type mRNA
GC content 0.51
exon number 28
gene id cdan1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 16409811 ~ 16420785 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGCAGAATGGCGGCTCTTTTGGAATCGCTGCTCCGGAGAGACGTGGAGTTGTGCAGAGCTTTGAACTGGCTGCGAGGACAAACTGACTGTAGCGGAGACCAGAATCTGCTATTAGCAGTCAGGAAGCAGGAGTTTGTGCCATTCCTCCTGAATTTCCTGAGGGATCAGAGCAGTAACACTCTGACTCACGGCCCCAGCACTCCAGCCAAGACACCCAGCAGCACCAGGCCTCTCCGAGCCCAGGGCTCATCCAGCGAGCGGAGGACATCAAACAGAACATCAGCAAGCCATGGTTCCCGCAGTGCCAGCCGAGTCCAGCTCTTCTCGTCTGCTCCCTCCACATCGCAGCTGGACAATCCAAGCGAGCAGGACAGTCCACTGACGGCCTCTCAGAGTCTTACTGGCGTAAGCGCCTTCAGCAGCCCATCGTTTAGCTCAGGATGGAGTCCTGCCCCTAGACACGTGACCTCTGAACGTCGATCTGCTCAGCGCCATTGCCTTGCTGATTTTATGACTTCGCCTCCAGACACTCAGGCCAGCCCTACGTTTCAGCCACATCGAGGGCGCAGGAGAAGCAGCGGGTTTGGAGCGTCTGGATCAAACCGTCAGGCTGGAGCGCGCGGTGGCCATTTGGTGGAGGCTGGCGGCTGTGAAGTtgcaggaaggaaggaaagaggtGGAGGGAGGACTAATGATCCGGTGTCACCCCCTACACAAGTGGAGCTCAACTTCAACAATTTGGAGGACTTTCCCCCAGTGAGTGCGTCTCATGCCACCCCTATAGCAGCGAGACCATCACGGCGCATCAACCCAACACCAGTAAGTGCGGAACGACCGAACTCTAAACCCAAGAGCTGCTTTACCTCCACACCCCTCAGCAAGCCGTGCAGTCCTCCTTCCATCCCAGAGGCCATGGATACTGGGCAGACCACTGGGAGCCCACTTTATCTGCAAGAGGAGAGGGAGCtactaaagaaagaaagGTCTAAACTTGCACAGCAGAGCAGCTCCCCACTGAAGCCCAGTGCAACTGTTGCACAGTGCACTCCCACCAAATCAATAGTGAGGTCAGGCTCAAAGGTGACTCCTGATCCCCAGACTCCCTGCCCTGACCCCACTAAAGTGACTCATGCACCAGAACTTGAGCTTTTAGCAGAGCTGTACTGTGCATGCATTTCAGAGAACTTGGTGCCATGTGTGTTCCTGGAGCTGTTCTTTGTGCTACAGCTGCTGACTTCACGTAGTGTGTCAACCTCTGAACCTACAGAAGTGTATCCCAGTAtgtgtgaaagaaagacagATTTTCTTGAGAGAACTTATCTGGGAAATGTCCACAGCTGTGTGTATTTTGCAGTGCGAGTTCTGGAGAATCAGTTTGCTTTGCTTTCGCACCTGGACCGCTGCACACTGCGCCTTCTGGCAGAGAATGAAAGAGTTGCCACTTTCTCTCCAGCCCTGCGAGATCGCCTGGCACAAGCTCAAGATACCTGCACAGCTAAGGAACCACCCAGCCACTCCACCTTCATTCATACAGTGCCATTCCAGCCAGCCACTGACAACCGAACTAACTTCAGCAGTGATAAAGCCTTCCACATCTTTAAGAAACAAAGAGATATTTTTTATGAGCTGCTTAGAGAATGGGAAGATTATCATAAGGAGCCTGGGTGGGAGTTTGAGGCAGCACTAGGCAACCGGGTCAGGGCAATGGTCAATCAGTTGACTGCAGCAGGAAACCATTGTCACTTTGCCAGGCTTTTCCAGAAGCAGCTGGTTCAGATGTGTAAAGGCCACAGGGAGCTCAGCTCTCCTGGTGATGCTCCAGATGCAGATCTGCTCGGGATGGTGGGGGCAGACAGCCTGGGGAGGCTGAAGCGCCTGCAAGAGCGTCTGATCCAGCCACAGGCTCTAAGTGGCCCTTGCCCTCCACCCTCTTTCCCTGGGCACCAGGAGTTCTTCAGAGATTTCCTACAGACAGCTAGCTGCTGCCAGTTGAACCAACACCTGAAGGATGGTTTGTGTCAGCAGCTACTGCAGTTGAATGAGGTGTCTATCCTGGGCCCCGACGGCTCCTCAACCACAGGAGAGGAAGGGGGAGATGGAGACATGGAGCAGCAGGATGAGAAGCAGAGATTCTCTTCAGTACTCCTTGTGGCTCGACTTCTTGCCAAGTTCCTGGGCTTTATCTCCTTTATGCCCTACCAGACCTCTGAGGCACCATCCAGAGAGATCCAGGAGGCTGCCATTGCCCTGCGCAGTAAGAGCGCCCCAGCGCTGGATGTGTCTGCCGTGTTGGTGAGCTGTGTGCGCAGGAAGCGCACTGTGCTTACTGTTCCCTGGCTGGTTGAGTTCCTCTCCATGCTGGACTACACCGGCCCTTTTTTGCCCTGCTACAGGACTGCTCTGGGCCTCCTACTTCAAATCTACAGgaGGATGAGGTTGGGTAAAGTTGGAGAGCAGTATTACTTGAATCAGATGTTGTTGGTGGCAGTGCTGGGTTGGCTTTTTCAGATCCCAGTCTTTCCAGAGGATCTCTTCTTTAGTATCAATCTGCAGGAACTAGAGGACCTGGAGAATCACACTAGTAGTCAAGGGCTGGACAATCTGCCCTTAGTGGATCAGCAGCTTCTCTATACCTGCTGCCCATATTTAGGGGAGTTTCGCAAGCTGTTGGCAGCTTTTGTGTCAGGAAGTGCGTCCAAGGCTGGAGGCTTGATCCGCAAGATCACGCCTACATCTGCTGAGCCCAGAGGTCCCCCCATCACCCGCTCTCAGCAGAAACTACAGCTGGACCTGGAGCAGGCCTTCTTTCATAATCAGCCTCCTTCACTTAAACGTACTGTGGAATTTGTGGCTGAACGAGTTGGATCTAACTGTGTCAAACACATCAAGGCCACGTTGGTGTCCGAGCTGGTGCAGGGCGGAGAGAAGACGCTCAGGGACGGTTTGGGTTCAGATAATGTTAATGCAGCCAAGCTGAATGACTCAATCTGTGCTCAGCTTTGTGACGCAGGCATGCAGGCCCTGGAGAGAGCCACCAGGTTTTGCAGTGAGAATGCTCCAAGAGCTGTAAGGGTTCTTTTGCCTGATGAGACATCTCAAGCAGTTCTGACAACAGCTGAGAGCATCACCACACGTCTGGCAACTGAGAAAGCCTGCAGCTGGCTCTCCTCCAATATCACAACTCTTATAAAGAGGGAGTGGAAAAGTACTTTCGAACGGGTGATGAAGAATGTGCCGTGTCCTGCAAGCACCGAGACTGTGGATGCCGGTGGATCTGGCAAGAGTGTGCAGACACAGAAGAGCTCCTCAGGACAGGATGCTGGGTCCTCATGCCCACAAGATTGCTCCCACAAAGGTCCACTGGCATCAGATGTTATTATCGAGATAAAGGAGGTGCTGAGCATCGCAGTAGGGCCCAGGTCTGAAGAGGAGGTTTTTACAGTGCAGCAGATTGGCTCTCTGCTAGATAAAGTGGGACAGACACTAAGATGTAGAAAGTTCATGTCTTCAGTAGCTGAGCAGATGCTATTGCGATGCACTGTCTTGTTGGCCTGCAAGCTAGTGTCTGGAGAGCTACCCCTGGTGTCTTCAGCTGGGGGTAACAGGAACGAAGCTGTTGATGTTGGATCTTTATTGAATGAGGTGGTTGTTCTGTGGACTCATATTCCCTCTGCCCATGTGACTTTACACCTTCTCTTCAGTGAGCCTACGCTCACTGCCATCATCAATGCAAGTGACCTGCAGAGATATAACTACCTGCTCTTCGTTAGAACACTTATAGAGAAAGGCCTTCTGAGAGAGGAAGAAGTGAGCTCTCACTGGGCAAAGCTGTCAGAGTTATCCACTTCAATGGAATCCATTGAGAATTTTCAGAAGCTGTCTCTGGCCTCTCCTTCACCAGTGCCTTTAGTGAAATCTAGTGACATACTGCAGATCTCCCAGTGACCAATAGAGGGAGACACCTACACTACGTGGCAACAATATACAAAGGAAAACAGCTGAGATCACTTTAGCTGTTGtttgattttaaaacaattttaaacactCAGTTTACTACATGGTGAGCATTTGATACTCCAAAAGCACTTACCAAAAATTACTTGGCAATTTTCAGGTGCACAGCAAATTTCCTCACAGGTGTTAAGCCTTAATGCTTCCAGTCTGCATCTCTGCATCTTGTACATGCCCTTGACTGAGCCAATTACAGTGTACTGAAACCTGATTTGCTGGTAATGCAATGGTATAGCATGTGGTCTTGAAAGTAGCAATTGCAATCTATTTGCACCTCAGATTGTGTTTCCTCTTTAAATACCAGTGGTTTTTTTATGGAAATGAGGATATATAAATTCGGCCATGTTCAGAGGGAAAAAGCTATTTAAAATATGCCTTTATCATTTTGGCCATCATTTTGACTGAGAGATTTTGGAATAGTTTGTATAATCCTTCCAGGTGGGGTAGGGGAGTGGTGCAATAGATCCAGGCAGTAAAGTTACTTAGATATTTGAGtttaaagtacactatatgggcaaaagtttgtggacacctcatCACCTCTCTCGTATGTGCTTTTGAACATCCCAGCTataagaacattagtgaggtcaggctctgATGTCGGACAAGGAGACCTGAGGTGCAGTCagctttccagttcatcccgaaggtgttaagtggggttgaggtcagggctctgtgcaggccacttgagctCTTCCACACCatccttgacaaaccatgttttcatggatc

Function

GO: NA

KEGG:

id description
K19531 CDAN1; codanin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197138 lncRNA downstream 142296 16267229 ~ 16267515 (-) True G166484
TU197027 lncRNA downstream 409299 16000219 ~ 16000512 (-) True G166390
TU197013 lncRNA downstream 476374 15933157 ~ 15933437 (-) True G166380
TU196943 lncRNA downstream 513241 15895667 ~ 15896570 (-) True G166319
TU196899 lncRNA downstream 563556 15664486 ~ 15846255 (-) True G166289
TU197311 lncRNA upstream 24056 16444841 ~ 16446005 (-) True G166633
TU197551 lncRNA upstream 323821 16744606 ~ 16744822 (-) True G166865
TU197619 lncRNA upstream 418296 16839081 ~ 16861229 (-) False LOC113538645
XR_004578933.1 lncRNA upstream 419649 16840434 ~ 16860820 (-) False LOC113538645
TU197613 lncRNA upstream 440053 16860838 ~ 16865427 (-) True LOC113538645
XM_034307994.1 mRNA downstream 1669 16379857 ~ 16408142 (-) False stard9
XM_034307993.1 mRNA downstream 1669 16379857 ~ 16408142 (-) True stard9
XM_026933774.2 mRNA downstream 44551 16339196 ~ 16365260 (-) False sptb
XM_026933775.2 mRNA downstream 48821 16337712 ~ 16360990 (-) True sptb
XM_034307934.1 mRNA downstream 50323 16358586 ~ 16359488 (-) True LOC117598247
XM_026933734.2 mRNA upstream 58394 16479179 ~ 16491045 (-) True mbip
XM_026933733.2 mRNA upstream 58397 16479182 ~ 16491045 (-) False mbip
XM_026934315.2 mRNA upstream 85108 16505893 ~ 16508515 (-) True nkx2.1
XM_026934511.2 mRNA upstream 92450 16513235 ~ 16515180 (-) True nkx2.9
XM_026934100.2 mRNA upstream 120055 16540840 ~ 16620401 (-) True slc25a21
XR_003403899.1 other downstream 393327 16016352 ~ 16016484 (-) True LOC113539022
XR_003403876.2 other downstream 647093 15720457 ~ 15762718 (-) False eml5
XR_003403862.2 other downstream 746316 15635086 ~ 15663495 (-) False ktn1
XR_003403861.2 other downstream 746316 15635086 ~ 15663495 (-) False ktn1
TU196803 other downstream 1087807 15304623 ~ 15322004 (-) False pgfb
XR_004578948.1 other upstream 825154 17245939 ~ 17247819 (-) False htr1b
XR_004578949.1 other upstream 825154 17245939 ~ 17247157 (-) False htr1b
TU198371 other upstream 1884958 18305743 ~ 18316207 (-) True G167566
TU198372 other upstream 1884958 18305743 ~ 18316207 (-) False G167566
TU198375 other upstream 1958112 18378897 ~ 18382455 (-) False gdf7

Expression Profile