RNA id: XM_026934441.2


Basic Information

Item Value
RNA id XM_026934441.2
length 2019
RNA type mRNA
GC content 0.45
exon number 12
gene id ivd
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18659288 ~ 18666320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGACTCCTTTCGTGTGCATTCATAAAGTGTGCAGTTGTATAAGTAGTCGGTGTGTTTGCACGGAcacgtgttttttttataaatattttataatattgcatttttgGCATTAAAATGTTTGCAGCCAGAGGAGTGTTGCGCTTTGCACAGAGGCTGGCCGGTGTTAGTGTGTCGCGGCGGGGATGTGCCGGTGCTGTTCCCGTGGACGACATTGTAAACGGACTCACAGACGAGCAGATTCAGCTCAGACAGACGGTTCAGCGGTTCTGTCAGGAAAAGCTTGCTCCCTATGCTGACGAAATAGACAAAGCAAATGATTTTCCACGTATGAGAGACTTTTGGAAAGAGGCAGGTGAACTTGGATTGCTTGGGATCACAGCTCCAGTGGAGTATGGTGGCACAGGACTGGGCTATCTTGATCATGTAATTGTGATGGAGGAGATATCACGGGTGTCAGGAGCTGTAGCGCTCAGCTATGGTGCGCATTCCAACCTCTGTGTCAATCAGCTTGTGCGCCATGGCaaccagaaacagaaagagaagtaCCTCCCGAAGTTGATTTCGGGAGAACATGTAGGTGCCCTGGCCATGAGTGAGCCCAACTCTGGCTCTGATGTAGTATCCATGAAACTGAAAGCAAAGAAAGAGGGTGACCACTATGTGTTGAACGGTAATAAGTTCTGGATTACGAATGGACCTGATGCAGACGTTCTGGTTGTTTATGCGAAGACAGACATAGATGCAGCTGCACGTGGAATCTCCGCGTTTATTGTAGAAAAGGGAATGCCTGGTTTCAGTACTGCACAGAAGCTGGATAAGCTGGGAATGAGAGGCTCCAACACGTGTGAGCTCATCTTTGAAGACTGCAAGGTTCCAgAGAAGAACATGTTGGGACCATTGAACAAAGGAGTGTACGTACTGATGAGTGGACTCGACCTGGAGAGGCTTGTGCTCTCAGCCGGGCCTATTGGCATCATGCAAGCCGTGCTTGACCACGCTATTCCTTACCTGCATGTCCGAGAAGCATTTGGGCAGAAGATCGGCCACTTCCAGCTGATGCAAGGAAAGATGGCTGACATGTACACCCGACTTAGTTCGTGTCGGCAGTACGTGTATAATGTGGCTCGAGCGTGCGACAAAGGCCACTTCAGTGCCATGgACTGTGCTGGGGTAATCCTTTATTGTGCTGAGAACGCGACTCAGGTTGCCTTGGACGGGATTCAGTGCCTGGGTGGAAACGGTTACATTAATGATTACCCAATGGGCCGCTTCCTGCGAGACGCTAAACTCTATGAGATCGGCGCAGGCACCAGCGAAGTCCGAAGGATGGTTATTGGTAGGACCTTCAACGCCATGTTCAAATAAGATTGCAGCTGAACCGGAAGTTATCACCGGGGATCTGCTGGATGCCTTTCCCAGATTTCtattatattacaatatgcACAGATTAAGCAAGGAGATATACTTGTCAGATGAATGCTTTAGATGGTGCTGTACAACAGAACAAATTGTACGATCATGAAGACTTATATGCATCTACATTTAATTCCAGTAGGGGAAACTTGATGGGCAATTTAGTAATCTCTGTCTTCACATAGGTATGTGTTACAAGCCTAGCAAAGCTAAATGCATTGCTGGACCATTCTAAATGAATATTACTGAAAAACTGTATTCTGTAAAACAGACCGATCACACTCACAAGACAATGTTTGTTCATGTAATTTAGACAAAAACACTAAcgaaaatctgtttttttttgtctctataCATTGTGTGATTCTATAGTATATAGGGAACTGTGTATAAAAGGAATGGATTTACAGTGGTGTCTTTTCAATATAATCGTCAGTTGCGAAGTATTTTGTATGTCATAGTGTCTTTAATAACAGCCTTAATGAAATCCTGTTAGATGCTTTGTTTTAAGCCATAAAGGCTGCTATTTTGTGGTAGATAGGGGTTCATTGAAATGTGTTCTCAGAGCATAAAGTATAAAGCATTGAACACAATTCAAAAACTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00253 IVD, ivd; isovaleryl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198652 lncRNA downstream 57974 18600331 ~ 18601314 (-) False bahd1
TU198648 lncRNA downstream 62402 18596581 ~ 18596886 (-) True G167802
TU198632 lncRNA downstream 87395 18571503 ~ 18571893 (-) True G167786
TU198626 lncRNA downstream 94909 18563971 ~ 18564379 (-) True G167783
TU198523 lncRNA downstream 200494 18458455 ~ 18458794 (-) True G167684
TU198742 lncRNA upstream 136121 18802441 ~ 18802693 (-) True G167883
XR_003403878.2 lncRNA upstream 613958 19280278 ~ 19285841 (-) True LOC113538783
TU199245 lncRNA upstream 653518 19319838 ~ 19426679 (-) True G168304
XR_003403864.2 lncRNA upstream 774769 19441089 ~ 19449728 (-) True LOC113538592
TU199297 lncRNA upstream 827743 19494063 ~ 19498688 (-) True G168354
XM_026934039.2 mRNA downstream 16399 18600295 ~ 18642889 (-) False bahd1
XM_026934038.2 mRNA downstream 16399 18600295 ~ 18642889 (-) False bahd1
XM_026934041.2 mRNA downstream 39343 18600295 ~ 18619945 (-) True bahd1
XM_026934042.2 mRNA downstream 39963 18600295 ~ 18619325 (-) False bahd1
XM_026933881.2 mRNA downstream 95922 18556118 ~ 18563366 (-) False pcmtl
XM_026934534.2 mRNA upstream 17485 18683805 ~ 18752787 (-) False ltk
XM_026934533.2 mRNA upstream 17485 18683805 ~ 18752787 (-) True ltk
XM_026934459.2 mRNA upstream 112160 18778480 ~ 18799429 (-) False rpap1
XM_026934458.2 mRNA upstream 112160 18778480 ~ 18799427 (-) True rpap1
XM_026934260.2 mRNA upstream 155956 18822276 ~ 18825221 (-) True haus2
TU198375 other downstream 276833 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 343081 18305743 ~ 18316207 (-) True G167566
TU198372 other downstream 343081 18305743 ~ 18316207 (-) False G167566
XR_004578948.1 other downstream 1411469 17245939 ~ 17247819 (-) False htr1b
TU198855 other upstream 177483 18843803 ~ 18847696 (-) False LOC113538624
TU198915 other upstream 295388 18961708 ~ 18966613 (-) True G168015
TU199357 other upstream 923748 19590068 ~ 19594777 (-) False LOC113538862
TU199706 other upstream 1347259 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 1656444 20322764 ~ 20330744 (-) True gchfr

Expression Profile