RNA id: XM_026934458.2


Basic Information

Item Value
RNA id XM_026934458.2
length 5305
RNA type mRNA
GC content 0.50
exon number 25
gene id rpap1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18778480 ~ 18799429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAACCGGAAGTGGTGGAACATGGTTGCATGTGGACTCTTAGCAAGTTGACTGCGTTGTGTTTGTTATAAAGAAGAGTGCAGAAAGTAAATATCTTTTTCTGCTGACGTATTTCAGACgCTTGGGAATGTTACGGCGTCCCAAGCCCACAGACTCCGAGTCGGACTTGCTCCGGGAGCAGGAGCACTTTTTAGCCTCTGGGAGCGCACCAGCGGCCAGTGTGACGCGGAGAGCAGATAAGCGCAGAGGGGACAATGCTTCGGCAGACAGTGATGAGTCTCGTGCGAATCCAAGAGATGTTGTGACGATAGCAGATCTTCCTGATGAGCTGCCTACTTTGACTCCTGCGCCACCCAAAAAGTCATGTTCCAAAAAAGTGCGTGTGCGTTTTGAGAATGAAGATCCAGAGGAGCTGCTGGACAGACATGACACTCACATCAGTGCTGTCCTCTCAAGGATTGTTGAGAGAGACACTAGTGCTGTACCAGTGTTACTCCCAGCCTTCACAAGCACAGCTTTCCCCAAAGTCCTGCATCACTCTACAGTCAACAAGCAGGGAACAGAACCCAGAGGTCGAAAAAGTATTTTTGCACGTCATGTTGCTGCACAGAAGGCTAAACCAGAATGTGAAGAGAAGAATGAGCCGAAGGTCAGCAACACACAGGCATCTGAATCCAGACCGGCCCACGGCACTGCTGATGGTCCCTTACTGGTGTCAGGTCAGGGCCTTGGTCCAGACAGAGCTGTAGAAACACTAAAGATCCACCAGGAGAACCAAGCCAGGCTGCAAACAATGTCTCAGAGTGAGATTCTGGAGGAGCAGAAATTGCTGTTGGCTCAGCTAGatccAAGACTAGTGGATTTTGTAAGGTCACAGAAAGCTCAGAATGCTTCATCTTCCACATCCTCCTCTACAGAGAAATCAGTATGTCCTGACCAGTCTTTAACTGAGAGCAAAGCTCCAGCACCTCACTACTCAGACTCAGTACCGGACTCTCAGGAGGTTACAATGGATACCAATGAAGAGGATGAAACAGAACCTAATAATCATAATCCAATCACTGTGGAACAGCTACCAGTCAAGCCTGAGAAAGAGTGGCTACACATGGACAAACTGGAGCCCGAGAAACTGGAATGGATGAGGGATTTGCCTGCCCCTAGGAAGCAGGGCACTAGAAAGGCCATGCAGGCACGTTTCGACTTTTCTGGCATCCTTCTGCCCCCCACAGAAGACTTACCCACTCATCTCGGCCTGCATCATCATGGGGAGGAGCCAGAGTTGGCAGGCTACTCGCTGCAGGagctttttctcctctctcgCAGTCAGCTGACCCAGCAGAGGAGTCTGGCTCTGAACACTTTGGCCCACATCCTGTCAAAGGCCCGTGCTGGTGAGTACTCATCATGCCTAAAAGGCAATGTGCTGGCCTCCTTGCTTGATGCTGGACTCCTCTTTCTGTTGCGGTTCTCTCTGGATGACAGTGTGGAGGGTGTAATGTCTGCGGCTGTGCGTGCCCTGCGAGCCTTCCTAGTTTCCACTGAAGATGAGGAGAACCTGGACGACATGTTTCCCTGGCTACTAGGGATGGCAGCTTTCCCCTTGGTTCCCCAGGTTCACAAGGAGGAGGATCAAGATGATGAAGGTCTGAATGAGTCTACAaaggaaacagagaaagagaaagaagagagaaaattaGATCACGATGTCGCTCAACAGGATGTTATCAAGGGTTTGTTGAAGATGCAGCTTCTGCAGCGGCTGCGGTACATTCTTGAGGTGGTACGACCTTCACCCCAGACAGTTCTTGATATTCTGCAGGTTCTGATCCGAATCGCTCGTCACTCAACCTCTGCAGCCACACAGATCCTTGATTGCCCCCGGCTAATGGAGACCGTGATGTCAGATTTCCTGCCTTGCTCATGGACCCCGCTGACCTCACCAACCCCACTTTCTTTATACGGGTTGCCTGTTTCCACGGCAGTGAAGCTCCTGCGTGTGTTGGCAAGCGCCGGCAGGCACGCCTGTGCGAGAATACTCAACAATCTAGGTGGAAAGGAGCGTCTGTCTCGGTTCTTGTCAGTGGAACCTTCAGAGCTTCTGTTACAGCCTGGGGACAATATATGCTGTAGCACAGAGGCACTGAGGCTGTGGGCTGTGGCTGCAAGCTATGGGCAGGCCTGTAACCTGTACAAAGACTTGTACCCAGTGCTGGTGAAGGCGTTGCAGTCTGCACATAAGCCCTGTGCTCCCTCTGAGTCTCTGCTGGTCCTGGAGCTCCAGAGAGTGAAGTCTCTGCTAGTGTTGCTCACTCAGGTCACACACACTGCCGGCTGCCACCAGGAGTTACAAAGTGGACTgctgagCTCTCAGGGGGCTGAGTGTCTCCCCCCACCCCCAGTGACCTGGAGTCATGTGTCTGGGTTGCAGCCCACTCTGACTGGCATACTGAAAGGCTGTGTGAGAAAACTGGACGACCCAAGTCAAAGTTCGAGCACCCTAAGTCTACTGCCGTCTTACCTGATCTACATGGGAGCATATTACTCTCAGTTCAGTGTGcagAGTTCGTTCCAGCCGGTGCAGTGCCTTCAGGAACTAGAGGCCCTGACTACAGAGGTGCTCCTTCCTCTCATATCCCATCAGGTCTTTCACAGCATGATGGGCAGCCTCAGGTCAAGCTCAGTAATATGTAAGCGTGGTTTGAGCACTTCAGCCCGGGAGGTTGTTCCCAGTCTGCCAGGCTTGGGCAGCTCCAGGGTTAAGATAACCAGCCTGTTAGGACCTGAATCTCCTCTGCCTCTCTGTACTGCTCTCTTCTATCTACTGGACATCATCGTGACCATCCACCGTGGCTTAACCAAGAGTTTCAGCTCTCTCATCCTTTCGGACTCCGTGCTGGTTTACCTGCAGTCTTGTGTTGGAGTGACGCCCTCTGTGTCTCATGCCAGTGCCTGGATTTTACGCCATGAGCACCACTTTCTCTATCTGATACTCCGGCTGGCTCACAGACTGGTTCCTGCTGACCCACAGATGAAGAAACATGCTTCTCTGTTTCACCAAGTTGCCTTGGCTCTGCTCTCATGGCTGTTGCCTGGAAGTGAATATCTGGTATATGAACTTGTGTCTACTATGATCTTCAATCCGGACCTCTTTCCTGAGGCTGGAAGTGGAGGTCCAGAAGCCGCGACCCTGGCAGAGCTGCGGCTTCAGGAGATGTCCTGTCATTCACCCAGCCCTGGTCCCCTCCTCCGCGACTCCCTTGCCCAGCTTCCCTCAATCCGTGCCTGCTACCTCACACACCTTGCCTACCTGGAGCCTGCTGTGATCACCTCCCGTGAGCGGCACCTTGGTCGTAACCCCTGGCTTTCTTCTCAGCTCCTCCCTGAACTCTCAGGCCCCTCGCTGCCTTCTGATTGGGCCTTTTTGCCTCTCGTCAGCCTTTACGAGCGAATAGGAGTGTCTCAGGGCGGTGGGCTGCGGGCTGAATCGCTACCTGCTGGCTCTGTGCAGTCGCTTACGCATTGCCTGCAGTGGCTTCTTGTGCTCGAGAGCTTTAGGGAGCGGGCGCTGCAGCTGGTGCCACCTGTGGCCAAACTGGCACGTCTGGTCTGCGTCTTCATGTGCTCCAGCGATATCTTTCTGGAGAGACCAGTGAAGGAGCTGACATGGGCGCTGCTGCGTGAGCTGACTAGACCTGGACATTTAGAAGCTTTGGATCTGAGCCTGCCGCCTCCAGGTTTAGCCTCCTTCCATGATCTCTACTCTGCCCTGCTGGCTCAGTACGAGGCTGTGTCCTTTGGCGACACACTCTTTGGCTGCTTCGTACTGTTGCCACTGCAGAGGCGATACAGTGTGTCGATGAGACTGGCTGTGTTCGGCGAGCATGTCTCAATTCTGCGCTCACTTGGGGTCTCGCTGGAGCAGCTACCCATTGCTCTGGAGAACTTTACTTCCCCTTCTGAGGATTCGCTGCCTTTGCTGCGGCTGTATTTCCGAGCTCTGGTGACCAGAGCTCTGAGGAGGAACTGGTGCCCTGTCCTGTACGCTGTAGCTGTTGCCCACCtcaatgcttttattttctcccaAGATGCTGTGCCACAGGAGGTGGAGAGTACTCGTCGGAGTCTGCTGAGAAAGACATACTACCTGACAGATGAGGTGTTGAGGAGCCACCTGCTGCTTTTCCGTCTACCCCAGCAGCACAGTGAGCTAGGCTTCAGCACTTACGAGCAGCTGCCGTCCATTCGTGCCTGCAGGCTCCAGAGCGTAATAGAAACCAAGGAAGGAAATGGCTGAGACAGATGAGCCAGAACAGGCTCAGTTCTGTGGAGCAAATCCACAGCCTTCAAGACGCTGTGACAAAAAGAAGACTGAATTTTGTTTTCTAAGAATATTTTGAATGTCCAAAGTAGCATTTTAACTGCATCTCAGATTTGTCCCTTTAAAAGTCGCATTTAAAGTTTGGTTGTCCTCGTTAAGAAATTAGTGCATACGAAATGGTCTCACATATTCACATCgattcatattcatattgattattttaGACTGGAGTTGATATTGAGGGGAAACAAGCGATGCCAAAGTGAGGCAGGAAATGAGGATCTCCCTGGTGCACACAAGTGGCTTTGATTAGAGGGAGAGTAGAAGATTTATCTTATAATGTGCTAATGCCAAAATCTGTTGGAGAGGCATGGTCAGCATGTTTTTCTCTTCCCTATTCTTGGCTCCCTGTGAGCCAAATGCCACAAAGACTTGATTTAATTTGCCACACTAAAAGTGGAGGCTAGACCATTGCCTGCGAAAAGCTTATTTGGAAAATGCCCGCAGGCCATTACAAAGAAAGGTCTTAGCTTGTCAGTCTAAAGCTATTCTGATCATGTCATGTTaagatgtgttgtttttttttccacaagctGGATTTTCTGAAGTTGTGTTTATCCATATCATGGCTATGATTCCTTTGATTTACACCATGGCCGATTTTTTGGATGTGTCCCTAACATCTTCCCTAAACAGTAAGCCTTTCTGCTCTGAACTGTAAATAGCCATAAACTACATCATTGACCACTGACCATTTTCTTTACTGCTAAGACCTTCAGGATCTATTAATTGATGGTTTGCCCTAGAAACTATGGGACTTCTGATGACGTAGATATGACTCATTCTCCAGCAACTACTTTGTTGTTCTGAAACATGTTAATGGCTTTCTCTTCCATTTTTCACTGTATCTTGTATAAACAGAATAAGTGACTCATCGCATGGTTTCTAGCTGTGGTTGGACAATACTGTGTTTTATACATATTTGTTA

Function

GO: NA

KEGG:

id description
K20826 RPAP1; RNA polymerase II-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198652 lncRNA downstream 177166 18600331 ~ 18601314 (-) False bahd1
TU198648 lncRNA downstream 181594 18596581 ~ 18596886 (-) True G167802
TU198632 lncRNA downstream 206587 18571503 ~ 18571893 (-) True G167786
TU198626 lncRNA downstream 214101 18563971 ~ 18564379 (-) True G167783
TU198523 lncRNA downstream 319686 18458455 ~ 18458794 (-) True G167684
TU198742 lncRNA upstream 3014 18802441 ~ 18802693 (-) True G167883
XR_003403878.2 lncRNA upstream 480851 19280278 ~ 19285841 (-) True LOC113538783
TU199245 lncRNA upstream 520411 19319838 ~ 19426679 (-) True G168304
XR_003403864.2 lncRNA upstream 641662 19441089 ~ 19449728 (-) True LOC113538592
TU199297 lncRNA upstream 694636 19494063 ~ 19498688 (-) True G168354
XM_026934534.2 mRNA downstream 25693 18683805 ~ 18752787 (-) False ltk
XM_026934533.2 mRNA downstream 25693 18683805 ~ 18752787 (-) True ltk
XM_026934441.2 mRNA downstream 112160 18659288 ~ 18666320 (-) True ivd
XM_026934041.2 mRNA downstream 158535 18600295 ~ 18619945 (-) True bahd1
XM_026934260.2 mRNA upstream 22849 18822276 ~ 18825221 (-) True haus2
XM_026934259.2 mRNA upstream 22849 18822276 ~ 18824972 (-) False haus2
XM_026934258.2 mRNA upstream 22849 18822276 ~ 18824972 (-) False haus2
XM_026934262.2 mRNA upstream 22849 18822276 ~ 18824972 (-) False haus2
XM_026933830.2 mRNA upstream 40188 18839615 ~ 18847690 (-) True LOC113538624
TU198375 other downstream 396025 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 462273 18305743 ~ 18316207 (-) True G167566
TU198372 other downstream 462273 18305743 ~ 18316207 (-) False G167566
XR_004578948.1 other downstream 1530661 17245939 ~ 17247819 (-) False htr1b
TU198855 other upstream 44376 18843803 ~ 18847696 (-) False LOC113538624
TU198915 other upstream 162281 18961708 ~ 18966613 (-) True G168015
TU199357 other upstream 790641 19590068 ~ 19594777 (-) False LOC113538862
TU199706 other upstream 1214152 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 1523337 20322764 ~ 20330744 (-) True gchfr

Expression Profile