RNA id: XM_026934534.2


Basic Information

Item Value
RNA id XM_026934534.2
length 7445
RNA type mRNA
GC content 0.45
exon number 29
gene id ltk
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 18683805 ~ 18752787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGCATCAGTATTATAATGAATGAGAGCAAGGAGCTGTAAGACaagagcagctctgaaagtggatgcacattcatttctttttaaatcatcaGCAACAAAAAGAGGCTAAAGATTAGCACTTTATTTCCAGGATTCTTTACGAAGCAGCCATGGAATATCCAGCTGGACAAACTTCACTGACATTAATGTTGCTCATTTTAACAGTGATCAGGATCAGTCATGCTCTCTTGGATAGAACTGTAGAGCCAAGTTTTCCATTGCAGTTAAATTCTCATCACTCAAGCCCAGCAAGCCAAGCCATTACCTCCTGCGATTTTGAATCTCCTTGTTCCTGGAGCGTGTCCAATCACAGCACTCGTGGAGACTGGTATGTCACATCACCTCAGCAGCACTGGGCCGGCCAAAGGGGTGTCCAACCAATCACGGATCACTCCACTGGAGATTCTAAGGGCCACTTCCTGGTTCTGAGGCCTGGCTCTGTCCTGTGGGCTTCTGGGAGTTGCACATTCCATATTGCTAGTCCTGTAGTGCTAAACAGTGGCCCACAGTGTCGGCTTCGTTTGGCTTGCTTCCAGCCAGAACCGAGAATGGGAAACTTGTCTGTCTCCATGAAACTCACGGATTCTGCTGTCATCAACTCACTGACTTCTGTCCGCAGGGAAAAAGCTGGCATTAGGGCATCTTGGGAGGTTTTGGAGGCGTCAATAGGGAAAATGGATGAGCCCTTCCAGGTGACAGTGCAGTACACTTCTTGTAGTGGTCACGATCTTGGACTATTGGCCATTGATTCATTGGAGCTGAAGGACTGTACCGTGGAAAGCAGAGAATTGAAGGAGATAGCTCCAGATTGTGGGGAGAATTCAGCTGTTCGCTGTAATTTGGGCGGCTGTATAGATAAAAGCAAAGTGTGCGATTTCCACAGTGATTGCCCTCTAGGCGAGGATGAAGGATTCATTTGTGATACATTGCCATCGGGGTCATACTGTTCATTTGAGTTAGGCTCCTGTGGGTGGACAGTCTCTGATACACAGACTTCTTGGAACCTGTCCAGTGGAGAACAACTATCCAGAAGTACTGACCTATTAGGAACAACACTCCAAAATACTCAAGGACACTTCCTGTTCCTGAAGGTCAGAGGAAATGCTAATGGAAATGAAGCATCAATTTACAGCCCAGCTCTTCCTGTGACTCTGCCTAGGCAAGATTGTCAGTTGCACTTCTCCCTGTATTTGTATGGGGATTTTAATGGCACGGTGCGTCTGTCGGTGGTAGAGAATGGTACTTCAGTGACCCCTTTAGTGTGGGAGAGGGCTGGACATTGGAAGGACAACTGGCAGGATGTCACTCTACAGATCGCTGACCTCCGAAACGGGTTCCATCTGAAAGTGCAAGCCCTGTGGGCTGCTGACTCAGAAGCTGACATTGCGCTGGATGATATTTCTTTAAGTGCAACGTGTTTTGACACAGATCTAAAAGCTCCGCTTCTTGGCCGTCAAAATGATTTGGACGCTATCAGCCAGTTAGACTTCCCGAGTCCTCTTCCTGAGCCTTCTGCCTCAGAGGTGTCTCAGATGACATGGTGGTTCACCTCATGTGGGGCCAGTGGACCTCGGGGCCCTACTCAAGCGCAGTGTGACAGTGCCTATCGCAACACCAACGTTAGTGTGCTGGTGGGAAAAGAAGGCCCTCTCAGAGGTGTTCAGATGTGGAAAGTGCCTGCTACCAACAGATACAAGATCTCAGCATATGGAGCTGCAGGCGGCAAAGGAGCAAAAAACCATAACAAACGCTCGCATGGTGTCATCATTTCAGCCATCTTCACGCTGGAGAAAGGAGACATCCTATACCTCCTGATTGGTCACCAGGGGGAAGACGCTTGCCCAGGGAGGAACCCTCTGACTCACAAGATCTGTCTAGGTGAGTCATCTGTGATTGAAGACAGGTTTGAAGGTGACGGATCTGCTACAGAATGGGCCGGGGGTGGAGGCGGTGGTGGGGGCGCCACATTCATTTTCCACATGGAGAATGGGGAGCTGGTGCCTCTGCTGATAGCAGCAGGTGGAGGAGGAAAGGCGTATCTGGAGGACCCTGAGAGCACTTTGGACCAGATCCCTCTGGAACAGTATGAGAACGACACGGAGGCCTCTGGGGTCAACGGCAGAACTGGCGCAGCAGGAGGGGGAGGTGGTTGGAAAGATACCACAACTCACCTGTGGGCAGGAAAATCTCTGTTTGAAGGGGCAGAAGGTGGCTCACCTTGCCCCCAGGCCCTGTCTAAACTTAGCTGGGCGACGTTCGGAGGgtttggaggaggaggaggatccTGTACTGctggaggaggtggtggaggatACAGAGGTGGTGATGTGTCCCATGCTGATGACCTCACAGCAGATGGACAGGatggcatttcttttgtccatCCCTCAGGAGAGTTATTTCTGCAGCCTCTGGCAGCCATGGAGAGTCATGGGGAAGCTGAAATTGAAGTGCACCTGAACTGCAGCCACTGCCAGACTCAGAGCTGTAAACGTGATAAAGATAGCAGGTTCATCATCTGCCTGTGTCATAACGACGAGATTCTTGCTCCAGACAATGTCAGCTGTATAGAAACACAGGGTTCCATGGTCGCTGGACACCCGTCCTTGTCTCTGATAGTGGCGGTGGTGGCGTCCGCTGTGGTGACGGGTCTTGTGTTGACCTGTGCTTGCCTCATTCTCATGTATTACCGCAAGAAGAACCACCTCCATGCGGTCCGGGTATGTTTGCAGAGCCCCGAACACAAGCTGAGCAAGATTCGCTCCTCCATCATCATGACCGACTACAACCCCAACTATTGCTTCGCTGGTAAAGCTGCAGCACTGTGTGAGCTGAAGGAGGTTCCACGCAAAAACATCACCCTCCTCAGGGCTTTAGGGCACGGTGCTTTTGGGGAAGTGTATGAAGGTCAGGTTCTGGGTATGAATGGAGACAACACTGCCATGCAGGTTGCTATTAAGACTCTTCCGGAAATCTGTTCTGAGCAAGATGAGATGGATTTCCTCATGGAGGCACTAATTATGAGtaagTTCAACCATCAGAACATAGTGCGTTGTATTGGAGTTAGTCTTCAGATCCTGCCCAGATTTATTCTTCTGGAGCTCATGACTGGAGGAGACTTGAAGAGCTTTCTGAGACAGAACCGCCCCAGAGCTAATCAGCCCTCCTCTCTGACTATGCTGGAGCTGCTGCACATGGCCAGAGACATTGCATTCGGCTGCCGATACCTGGAGGAGAACCACTTCATTCATAGAGACATCGCTGCTCGGAACTGCCTTTTGACTTGTCCTGGTCCAGAGAGAGTAGCCAAAATTGGAGATTTTGGAATGGCTCGTGACATATACAGGGCCAGTTATTACAGGAAGGGTGGTCGTGCCATGCTACCAGTGAAATGGATGCCGCCTGAAGCCTTCCTAGAGGGCATTTTCACTTGCAAGACTGATACATGGTCATTTGGTGTACTGCTGTGGGAGATTTTCTCCCTGGGCTACATGCCTTACCCCTGTAAGACCAATCAGGAGGTGCTGGAATATGTGACGAGTGGAGGACGCATGGATCCACCTAAGAACTGCCCGGGACCAGTTTACCGGATTATGACACAGTGTTGGCAACACTGCCCAGAACATCGACCAAACTTCTCAGCTATTTTAGAGAGGATCAACTATTGTACTCAGGACCCTGATGTTATAAATACGCCCCTTCCAGTGGAGTATGGGCCAACTGTGGATGAAGAGAGCAGCACTGTGATTCGTCCAGTAGCATCTGGCAGCATGACTCCTCTTCTAGTCACCCGATCACTGGATGCGCCTGTGCAGCCGGCAATCTTTACTCCCCTCCCTCAGGTCCAGAAACCCCGACTGCTGTTACAGCGGCCAACCCAAATGCCTCAGGAGGTGGCCACACGTGAAACTTTGGACTCTTTTTGGGCTGAGCCACCTTCTGCTCCTGGAGCCTGCTCGAGCTCCTGGCTGCAGGTCCCAGAGCACCAACCATGCTCCAGATCTAGCTCCACCTCAGGAAGCCAAAAGCTAAAGAACAACACCAAGAATCTCTGGAACCCCACTTATGGTTCATGGATTCTGGAGAGCTTTGGGAGGACAGCCCTTTCCCACACCCAATCCGTGCCTTTGTCCTGTACCACCACTGCGCCGTCTCATTTTACCTCAACCTCAGAGCATAACGACTCTGGAACTGAAGCTAATGTGTCACCATGCTCTAATTCATCACCAGCTCCCTCTCAGATGAGCTCCAGTCCTCCAGGACCTTTGAGTCTCACTTCACGAAAAGGGCTGGCGGGGGCTGTAGGGGGCTCACTTGCTGCTGTCATGGACTTGGCTAAGCTCCAGAGCTTCCCTTGTGGCAATGTAAATTATGCGTACGATGAACAGAGCTATGAAGCTGAGAGTCTACCCTTGGTAGTTGCCAGGTCACCAAAACCCAGCAGTAGTTCTGCAGCTAGCTCCTCTCTAACAGCACTGGGCCTGGCTTTCTCCGGTACCCACAAACCATTGGTCAAGCGTCATGCCAGCTATGGACATGAAGATGTCAGGAGGCATACCAAGCCAGAGAAACCCACAAGGGACCGAGATTCAGGCTTCTCATTGTCGGAAGATCTTAGTGTTACTCCTGTGTAGCACTTTCAGATGATGAACTAATGCCAGATATAATACTGAAAAACAATGTAGCTCACTTCATTCAGGTTGCCTCGTCTAGAACTATATAAATTGCGAGGCCAGCGACACTCTTGTGGGTCCAAAGTAACAGAAAACAAGATGAAGAccattccatttttctttttgtgtgaaCAAATATTATGGCATCAGTATTGAATGAATGGGTAATTCAACACAAGCATCTTGTGCATATATTACAGAAAAGTTAAAAACATAACTGGAGGGCATTACTTCCACTCTGATTAGTGACATCTTTAATCAACACCCCTACACACAAACTACACAGAATGCGTGCTCAGCAATTCTTACgtgcatttttttccacaaatctgTCTCTGTGTGGCGTGAGTGGCATCGTATTACAGACCAGTGGGTCTATTGCGAAGGTCAAAATATCTAGGCTATTAtgagtttttcctttaatcatgAGCTAAGTGAGAATTTGGgcattttttcagtttatgtGAAACTGTACACGAACAGTAACCCGAACTTAGCTATTTCCTGTTCCCTAACAATTTAAGGAACATTGTATTCAGCTTCTGTTTAGTTTTAATTGTTTTCCATAGTAGATTCTGCTTTGTTTTCCTGGGTGAGTTTTATGGCCCCTGATAAGTTAATGCACTGTCTTCCTCACTGTGGACAATTCTTAAGGACAGTGTCCATTCACTAGGCTGTCCTTGGGTCTCCTGTCTACTCATGGGGTTTTTGAATCATTCACATGTTCCTCTTTATGGCACCCTGGTGGTATATACAGCATGCAGAAGAATTCAGGGCTACACTGCTTAGACAAGCAGTCTGAATGTTAAGACTGGTGTTAATACTGGTGCCATGGTTTTGATGAGTATGTTTTGATGCAACCTATAATACTTGGAGAAATCAGAATAATAAATTTACTTATTTTCTTCTGTCTCCAAACCACTAACCACTTTCTGTCACCTATACTCATATCAGGATTTGTGGATATTAATACATGTGAAAGAGACCGTGCTACCTAGCTGGCTGGAGCAGTAGCTAGTATTTTAGAAAAATGGACTTTTATGTCTTGTCATTGGCGTCTCTGTTATACGGCATGTAACGTCCAGTTATACAGAGCAGGAGTGCACTAAATTAGTTTATTCCAGATGGGAGGCCATTCTAACAAGGTTGTTAAGAAATTTTGAGCGGAGTTAGAGGTTGACAGCCCCACAAGCTTGCCTCTGCTGTGACCATTTGTGTGAttcttatgtttgtttttttgtgattttgtaattttctataactgagATTACTCTGTTTGCTAGAAGGAAGAACTGTGCGCTGCTGGAGAAGAGAAATGAGGTTGCTATTGTAgagataaatgatatgaaatatgagtGAACGTTTTCAAGCAGGTAGCTTTCTGTGGGTACTTTTAAAGCTGATAGCAAGTCCTTTACTCCTTTGTGTCCTTAACCATTTACACTGGATCTAACACTGTGAAAGATATTTTGATGAATATATTTTGAAGAACCAGCATTAGATATGGATTCATGTCTAGACAAGGATCTCTTAGAGGGCTCTGGAATAAGTGctttttattataacagcaagagACGCAGAATTTTCAAAGGCAGATATTGAGTTTCTCAAGGAGGAGCAGTTTTCTAAATACGCCAATCAACTTTTTTGTTAGAGAAacagtacaatttttaaattggTAGGTCTTTGATAAGACTGAAAATAACTACAAAAAATGGCAAGAAAACTCAAAAATAGATCATTCCAAATCCTACCAAGAAGGTGTAAAACCCCTGAACCACTGGAATCGTCCTGAGCTGTTTAATCAactttcaaatgaaaaataCCTCTAATGGGAATTGTTAAACTTGTCAATAGTGCCAAATCCTCAAGAATTTTGACTGGATGCCatgtttcattctgtttttttgtctggatTTGTCGAAAGCTGACAGTTTGTTAAACAAAGTGTTAGTGTTTCATTGTACGGTTGTGAGAGTGAACAAGTGGGGGAACATAACATGTAAGGACTTGCTCCAGGATAATGTGAGACATTGATGCCAGCGATAAATTTCTACACATAATGCATTCTTatggttttatatattattaaaaattaacaatATGATATTGCTATGTaaagtttttatgtttatggtagttttatgttatgtatattttgttGGTTAGGTATTATAGCTAAGACAGCTAAGTGTGGGGGTAACTACTTATTAGGCGTGCTGttgttttgttgcattttacATTCTGAACTGCCATTTAAAGTTGATTTTCTTCTTGGCACAACCTCAGATTATACGTTGAACCTTACCTTGACCTTTTATATTTGCAAAGTGGAGTTTTTCATACCTCGTCATTCTCGTTATCTCTGTCACTGAAGAAACAAATTCTTTTGAATCGATGCATAGAATAAGCTTCTTTTAACCAGAAAAAAGAagtgatatatatattaatttatatctaaatgaatattttactcTGGACTAACAATTACAAATATGTAGCTATATATTATTTAACCTCATGTGTActctgttgtttgtttgtttgtttaacttttttgaTTATTGAGACTTTATCACTGCCAATGGGCTGCATAAATACCTACTGTTTATGCAGGGAGCTGCATCATCTTCAATAACCACAAGGGGGAGCAATGGATTTTGTTGAAGTGTCTGTTGCTTTGGAATCTGGGAAAATGCTATTTCTACTGGACATAATAGTGTTGATTTA

Function

GO:

id name namespace
GO:0000187 activation of MAPK activity biological_process
GO:0048666 neuron development biological_process
GO:0048066 developmental pigmentation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198652 lncRNA downstream 82491 18600331 ~ 18601314 (-) False bahd1
TU198648 lncRNA downstream 86919 18596581 ~ 18596886 (-) True G167802
TU198632 lncRNA downstream 111912 18571503 ~ 18571893 (-) True G167786
TU198626 lncRNA downstream 119426 18563971 ~ 18564379 (-) True G167783
TU198523 lncRNA downstream 225011 18458455 ~ 18458794 (-) True G167684
TU198742 lncRNA upstream 49654 18802441 ~ 18802693 (-) True G167883
XR_003403878.2 lncRNA upstream 527491 19280278 ~ 19285841 (-) True LOC113538783
TU199245 lncRNA upstream 567051 19319838 ~ 19426679 (-) True G168304
XR_003403864.2 lncRNA upstream 688302 19441089 ~ 19449728 (-) True LOC113538592
TU199297 lncRNA upstream 741276 19494063 ~ 19498688 (-) True G168354
XM_026934441.2 mRNA downstream 17485 18659288 ~ 18666320 (-) True ivd
XM_026934039.2 mRNA downstream 40916 18600295 ~ 18642889 (-) False bahd1
XM_026934038.2 mRNA downstream 40916 18600295 ~ 18642889 (-) False bahd1
XM_026934041.2 mRNA downstream 63860 18600295 ~ 18619945 (-) True bahd1
XM_026934042.2 mRNA downstream 64480 18600295 ~ 18619325 (-) False bahd1
XM_026934459.2 mRNA upstream 25693 18778480 ~ 18799429 (-) False rpap1
XM_026934458.2 mRNA upstream 25693 18778480 ~ 18799427 (-) True rpap1
XM_026934260.2 mRNA upstream 69489 18822276 ~ 18825221 (-) True haus2
XM_026934259.2 mRNA upstream 69489 18822276 ~ 18824972 (-) False haus2
XM_026934258.2 mRNA upstream 69489 18822276 ~ 18824972 (-) False haus2
TU198375 other downstream 301350 18378897 ~ 18382455 (-) False gdf7
TU198371 other downstream 367598 18305743 ~ 18316207 (-) True G167566
TU198372 other downstream 367598 18305743 ~ 18316207 (-) False G167566
XR_004578948.1 other downstream 1435986 17245939 ~ 17247819 (-) False htr1b
TU198855 other upstream 91016 18843803 ~ 18847696 (-) False LOC113538624
TU198915 other upstream 208921 18961708 ~ 18966613 (-) True G168015
TU199357 other upstream 837281 19590068 ~ 19594777 (-) False LOC113538862
TU199706 other upstream 1260792 20013579 ~ 20018694 (-) True srp14
TU199915 other upstream 1569977 20322764 ~ 20330744 (-) True gchfr

Expression Profile