RNA id: XM_034307745.1


Basic Information

Item Value
RNA id XM_034307745.1
length 2854
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC113530110
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20369134 ~ 20372103 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGCTCGGACAGAGTAACTTTCAGTGCCTAGAAATCAGAACACAAGGCATATTCATGATATTGTCTTGAATATTGGCAAGATATCTGAGACTGAACCATCTGAACATACAGAAACTCAGTTcacttgaacttttttttttcactgagaAAGGGAAAAAGGAGAAAGATTTCATCCATTAATTGGAACTTTACAGCAGAATCAAGAGATGGCATTATCAGAGAGCGAGTTTGGCATGAAGGGAAGCAGCATTATAAGGGAATGGAGTGGACAAGTCCAACCAGCGCTCatcatttccttcattttccTCTTCTGCCTGGAGGCCTGTCTGTGGATCCGCAACCTTGCTCTCAAGAAAAGGCTGCCAGGGCCCTTTGCATGGCCACTAGTGGGCAACGCCATGCAGCTAGGCCAAATGCCCCACATTACCTTCTCCAGGCTTGCAAAGAAGTATGGCAATGTCTACCAGATCCGACTGGGCTCCAATGACATAGTGGTGCTGAATGGACACACAGCCATACGACAAGCTCTCATACAACATAGCACAGAGTTTGCAGGAAGACCAAACTTCATCTCCTTTCAAATTATATCTGGAGGGAAAAGTATGACATTCGGCAGTTACAGCGAACAGTGGAAGGCACACCGGAGAGTAGCTCAATCTACCTTGAGGGCTTTCTCATCTGCAAACAGCCAGACCAAGAAGGCCTTTGAACAACATATTGTGGCAGAGGCCATGGATATGGTTCAGAACTTTCTCAGGCTGAGTGCAGATAGATGTTATTTCAACCCATCACATGAATTTACAGTCGCTGCTGCTAACGTCATTTGTGCTCTCTGCTTTGGAAAACGTTACGGGCATGATGACCCGGAGTTCAGGGCACTTCTGGGTAGGGTAGATAAGTTTGGAGAGACAGTGGGGGCTGGGAGCTTAGTAGATGTCATGCCTTGGCTTCAGTCTTTCCCAAACCCAGTGCGAAGCGTCTACCAGAACTTCAAGACTATCAATAAGGAGTTCTTTGCTTATGTGAAAGACAAAGTAGTGCAGCACAGAGACACATTTGACCCCGATGTAACGCGAGACATGAGTGATGCAATCATTAGTGTGATTGAACATGGAAAAAATAACATGTTGTCTAAAGACTTTGTGGAGGGAACCGTGACAGATCTGATTGGAGCAGGGCAGGACACTGTATCTACGATTATGCAGTGGATGTTGCTGCTCTTAGTGAAGTACCCAGCCATGCAGACCAAGCTCCAGGAGCAGATTGATAAAGTGGTTGGCCGTGACAGACTGCCCTCAATGGAGGACAAGATCAACATGGCCTACCTGGATGCTTTCATCTATGAGACCATGCGCTACACCAGCTTCGTGCCTGTCACCATCCCCCACTCCACCACCACAGACGTCACCATCGAGGGCTTCCACATCCCCAAAGACACAGTGGTGTTCATCAACCAGTGGTCTGTGAACCACGACCCACAGAAGTGGCAGGACCCCCACATCTTCAATCCCTCAAGGTTCCTGGATGAAAATGGAGCCCTTAACAAGGACCTGACCAGCAGTGTAATGATTTTCTCCACAGGTAAGAGAAGATGTATTGGTGACCAGATTGCCAAGACAGAGATCTTCCTGTTCTTAGCCATTCTGCTGCATCAGTGCACATTCAAGAGTAACCCCTCTCAGACTCTCACTATGGACTGCTCATACGGGTTAGTACTGAAGCCGGTCAAATTTTCAGTTACAGCCAAACTAAGAGGGAGACTCCTTGGCTTTGTGTCACCAGcataaattaaagaatgacttgCCAGCCCCTGATGCTCAAAGCGAGCAAAGACtgatacattttcaaatatatgACATATAACAGTGAGCATTAATAAACAAGCACTGAATGCtgttgtatatttaatatttaaagattaTTCACACATTTTGGGTAAGATGTATCTtttattaatggaaaaaaatggtcATCGTATTGTCTGATAGTTAAAAGGAACTGAGACAGTCTTCATCTCTTCTTGACTATAGGTAAaatctgtatatttacattgtGTATTCGATATCCTGTGTTTAAACAATATAAgctatgtgaaaaaaaaactttcagcaAGCAGTGCATAATTGTCAACATTAATGTAgtcataaaaaaatatgtacttTAGAATTGTTGATTTGCAGAAAACTGCTTTGATAGCTTCAGGTTCCTCTTTTGGTTCCTATGATTTGaagaaaatactgtatatgtatatgatttACTCAGATCTGTATAAAGTCATATAAAATGTGGATTATGAGTACTCATAACTGATGTATTTCaggtattttaaatattaatcatcTACCTTACATGTAAAGCCATCTACTGTATCCagattaaaagaataaatagcTTGACAAATTTGTAGGTAGTAAGAAAGTAATGATCATAATCTAGTAGTTACCATGCAGTAAGTGAGACATTGTGTCACTGGGataaattaaagtgaatttTGTGGCTCTTATGAAGAGTGTCCATAAGAGATCTTGGCCAAGTGGACTTACTTAGTCTTTTTCTTCCAAAtcctgtttttatatttcaccTGTCATTACAACCTAACTCACACTGGTTTCCAAGAAATTACTcatgatgaaatattttgtaataacacttttttaagTGCTGCTGCAAGCTATGCCATTAATTATGTATTGAGAAAATAATTCAGCtcttttaaagcaaagaaataaaattatttttgaatgtCCGTGCAAGCAGCCATATAAATTATGCATtgtattttcctttctttatacAAATTGAAAATAAGCTAATTTTGAagtgaattaaataaaagtaacaaCTTAAAACAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07410 CYP1B1; cytochrome P450 family 1 subfamily B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199899 lncRNA downstream 67580 20298541 ~ 20301554 (-) False LOC113529462
TU199761 lncRNA downstream 217831 20150293 ~ 20151303 (-) True G168759
TU199760 lncRNA downstream 219232 20149490 ~ 20149902 (-) True G168758
TU199758 lncRNA downstream 220398 20145267 ~ 20148736 (-) True G168756
TU199752 lncRNA downstream 262276 20106213 ~ 20106858 (-) True G168750
TU199937 lncRNA upstream 70894 20442997 ~ 20443772 (-) True G168908
TU200177 lncRNA upstream 166759 20538862 ~ 20540283 (-) True G169104
TU200182 lncRNA upstream 175542 20547645 ~ 20547877 (-) True G169109
TU200196 lncRNA upstream 192052 20564155 ~ 20564706 (-) True G169118
TU200194 lncRNA upstream 192353 20564456 ~ 20564828 (-) False G169118
XM_034308391.1 mRNA downstream 38388 20323514 ~ 20330746 (-) False gchfr
XM_026920020.2 mRNA downstream 38388 20323514 ~ 20330746 (-) False gchfr
XM_026918654.2 mRNA downstream 67585 20298511 ~ 20301549 (-) True LOC113529462
XM_026919034.2 mRNA downstream 113259 20233453 ~ 20255875 (-) False inf2
XM_026919033.2 mRNA downstream 113264 20222775 ~ 20255870 (-) False inf2
XM_026919852.2 mRNA upstream 72092 20444195 ~ 20453800 (-) False LOC113530102
XM_026919850.2 mRNA upstream 72092 20444195 ~ 20453800 (-) True LOC113530102
XM_026919859.2 mRNA upstream 129046 20501149 ~ 20521426 (-) True acp7
XM_034307752.1 mRNA upstream 129046 20501149 ~ 20520386 (-) False acp7
XM_034307751.1 mRNA upstream 129046 20501149 ~ 20518356 (-) False acp7
TU199915 other downstream 38390 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 350440 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 774357 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1402521 18961708 ~ 18966613 (-) True G168015
TU198855 other downstream 1521438 18843803 ~ 18847696 (-) False LOC113538624
TU200198 other upstream 192826 20564929 ~ 20565799 (-) True G169119
XR_003403127.1 other upstream 360827 20732930 ~ 20733052 (-) True LOC113530231
TU200304 other upstream 442458 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1743462 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 2483391 22855494 ~ 22863767 (-) True G170435

Expression Profile