RNA id: XR_004578904.1


Basic Information

Item Value
RNA id XR_004578904.1
length 2033
RNA type misc_RNA
GC content 0.46
exon number 7
gene id LOC113530103
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20521595 ~ 20531222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGTTTCTAGGGTTATgggaggagttggatcaggtccaCCTCCACCCACTGGACTGGTTCTGCAGCGAGCACGCTTTAGCTGCTTTTCCCATGAAAAGAGCTGGCAAAACTGGTAGATGCCGTAAATAATATCCTTCGAAATGCATATAACAATTTTGAAGAGGGGACAGGAAGCTCCAGTTGAACGGTGCACCACATGTTGCAGTAACCTTAGATACCACTGTCCATTCTGCACATCTGAAGTGTACCGTCCGAATGAGTTACATCATGTAAAAAACCATGTGTTCAACCACCTAAGCCTGGCAGTGGAGCATGAAGACTTCATCATAGTCAAATGCAACTTGCACTGCAGAGACCAAGCACATTTTCATTGCTGTTACTGCACAACAACAGTGATAAGAAAAGTTCAAATAATCAGGCATTTAACAGCATGCAGAAGACGATCTCCTACCCCATCTCCATGGCCCTGTACAGAATCCACCTTTGATACTGAGCCAGTATCTGTGAGAGAACCAGTGTCCTCCACAGAGCCAGCTTCCATCACAGAACCAGCATTCGTCACAGAACCAGTTTCCGTCACAGAGCCAGTGTCCGTTACAGAACCAGCTTCCATCACAGAACCAGCGTCTGTCACTGAGCCAGCATCCGTCGCAGAGCCAGCAATCATCACAGAACCAGTGTCTGTCAAAGAACTAGCATCCATCGCAGAGCCAGCGTCCGACATAGAGGCAGTGTGCTTGACCAAAATAGTGTCAATCACCAAATCAGCCTCACTAGCAAAGCATGTTCATGTACAGAAAAAAGTTCAGTGCACTCACTGTGGAATTACagtcagcaaaaaaaatctggatatGCATATCAGAAGAAAACACAGTCTGAAGATGCATATAACAGTTTTGAAGAGGGGACAGGAAGCTCCAGTTGAACGGTGCACCACATGTTGCAGTAACCTTAGATACCACTGTCCATTCTGCACATCTGAAGTGTACCGTCCGAATGAGTTACATCATGTAAAGAACCATGTGTTCAACCACCTAAGCCTGGCAGTGGAGCATGAAGACTTCATCATAGTCAAATGCAACTTGCACTGCAGAGACCAAGCACATTTTCACTGCTGTTACTGCACAACAACAGTGATAAGAAAAGTTCAAATAATCAAGCATTTAACAGCATGCAGAAGACGATCCCCTACCCCATCTCCATGGCCCTGTACAGAATCCACCTTTGATACTGAACCGGCAGCTGTGAGAGAACCAGTGTCCTCCACAGAGCCAGCTTCCATCACCGAGCCAGCGTCCATCACAGAACCAGTATTCTTCACAGAACCGGGGTCCTTCATAGAACCAGTTTCCACCACAGAGCCAGCTTCCATCACAGAGCTGGCGTCCGTCACCGAGCCAGTTTCCATCACAGAAGCAGCATTCGTCACAGAGCGGGCTCCCATCACAGAACCGGCATCTGTCACAGAGCCAGTTTCCGTCACAGAACCAGCATTGGACACAGAGTCCGACGTCCGTCACAAAGCCTGCTTCTATCACAGAGCCTGCGTCCGTCACAGAATTGGCGTCCGTCCCAGAGCCAGTGTCTGTGAACAAATTGGTGTCCATTGCCAAATCAGCCTCACTAGCAAAGCATGTTCATGTGCAGAAAAAAGTTCAGTGCACTTACTGTGGAATTacagttaacaaaaaaaatctggatatGCATATCAGAAGAAAACACAGTCTGAAGATGCATGTAACAGTTTTGAAGAGGGGACAGGAAGCTCCAGTTGAACGGTGCACCACATGTTGCAGTAACCTTAGATACCACTGTCCATTCTGCACATCTGAAGTGTACCGTCCGAATGAGTTACATCATGTAAAGAACCATGTGTTCAACCACCTAAGCCTGGCAGTGAAACATGAAGACTTCATCATAGTCAAATGCAACTTGAGCTGCAGAGAACAAGCACATTTTCATTGCTGTTACTGCACAACAACAGTGATAAGAAAAGTTCAAATAATCAAGCATTTAACAGCATGCCGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199853 lncRNA upstream 67790 20444244 ~ 20453805 (+) False fsip1
TU199855 lncRNA upstream 77662 20443790 ~ 20443933 (+) False fsip1
TU199869 lncRNA upstream 78963 20442375 ~ 20442632 (+) True G168850
XR_004579010.1 lncRNA upstream 172763 20347540 ~ 20348832 (+) True LOC117598343
XR_004578952.1 lncRNA upstream 282956 20237101 ~ 20238639 (+) True LOC117598257
TU199991 lncRNA downstream 41925 20569876 ~ 20572563 (+) True G168938
TU199993 lncRNA downstream 45081 20573032 ~ 20573278 (+) True G168940
TU200100 lncRNA downstream 213393 20741344 ~ 20823383 (+) True G169045
TU200101 lncRNA downstream 304895 20832846 ~ 20842174 (+) False G169046
TU200106 lncRNA downstream 304895 20832846 ~ 20842174 (+) False G169046
XM_034307749.1 mRNA upstream 77123 20365174 ~ 20444472 (+) True fsip1
XM_034307747.1 mRNA upstream 77123 20400002 ~ 20444472 (+) False fsip1
XM_034307750.1 mRNA upstream 77123 20400002 ~ 20444472 (+) False fsip1
XM_034307748.1 mRNA upstream 77123 20400010 ~ 20444472 (+) False fsip1
XM_026918653.2 mRNA upstream 208437 20262361 ~ 20313158 (+) True dnajc17
XM_026919862.2 mRNA downstream 7105 20535056 ~ 20540298 (+) True LOC113530108
XM_026919861.2 mRNA downstream 12947 20540898 ~ 20544512 (+) True zgc:194887
XM_034308304.1 mRNA downstream 210968 20738919 ~ 20813729 (+) True LOC113529967
XM_026918989.2 mRNA downstream 315847 20843798 ~ 20896411 (+) False eif2ak4
XM_034307769.1 mRNA downstream 317152 20845103 ~ 20880665 (+) False eif2ak4
TU199644 other upstream 478660 20042477 ~ 20042935 (+) True G168650
XR_004578926.1 other upstream 599194 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other upstream 606886 19913633 ~ 19914709 (+) False LOC113538658
XR_004578946.1 other upstream 635086 19879735 ~ 19886509 (+) True zfyve19
TU199113 other upstream 834004 19679315 ~ 19687591 (+) False G168191
XR_004578912.1 other downstream 568 20528519 ~ 20531222 (+) False LOC113530103
XR_004578913.1 other downstream 574 20528525 ~ 20531222 (+) False LOC113530103
XR_004578914.1 other downstream 576 20528527 ~ 20531222 (+) False LOC113530103
TU200725 other downstream 1141956 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 1291330 21819281 ~ 21820059 (+) True G169692

Expression Profile