RNA id: XM_034307776.1


Basic Information

Item Value
RNA id XM_034307776.1
length 1431
RNA type mRNA
GC content 0.50
exon number 14
gene id gpn1
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28916376 ~ 28928895 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACAGCGCCGGTTTTCAGGTTTCAAATAAACATGGCCACCGCGCAGGCTGAGAGAGATGGTGCTGGGATtggaaatgaacaaaatgatgGAAGAGGCGATGAAAATCCAGAGACAAGCAGCGGAAAACCTTTCGAAAATACCGCGGAACAGAAGCCAGTGTGTCTCATAGTGCTTGGCATGGCGGGTTCGGGCAAAACTACTTTCGTTCAGCGACTCACAGCTCATCTGCACTCAAAGAAGAGCCCGCCGTATGTTATTAACCTGGACCCTGCGGTTCATGAAGTTCCGTTTCCGGCCAACATCGATATCAGAGACACAGTGAACTATAAGGAGGTGATGAAACAATACGGTTTGGGCCCGAACGGAGGAATCGTTACGTCTCTCAACCTGTTTGCGACGAGGTTTGATCAGGTGATGAAGTTCATTGAGAAGAAGCAGCAGAGTCATCAGTATGTTCTGATTGACACCCCGGGACAGATTGAGGTGTTCACCTGGTCTGCATCAGGAACCATCATAACCGAGGctctgGCCTCGTCTTTCCCGTGTGTGGTGATGTATGTGATGGACACGTCCCGCAGTGTGAACCCCGTCACCTTCATGTCCAACATGCTGTACGCCTGCAgtaTTCTGTACAAAACCAGACTGCCCTTCATCGTGGTCATGAACAAGACAGATATAATCGATCACCGCTTTGCCGTGGAGTGGATGCAGGACTTTGAGGCGTTTCAGGACGCGCTGAACCAGGAGACGTCGTACGTCAGTAATCTCACGCGCTCCATGAGTCTGGTTCTGGACGAGTTCTACACAAACCTGcgtgtCGTTGGTGTATCAGCAGTAACAGGTTCCGGACTGGATGAACTCTTTGTTCAGATCACAGACGCGGCTAAAGAATACGAGACAGAGTATCGTCCTGAATACGAGCGTCTGCATAAAGAGCTGGCCGAAGCTCAGAGTAAAAAACAGCAGGAACAGCTGGAACGCCTCCGGAAAGACATGGGAgaggtttccatggaaacagGTGTGCAACCAGACGTTCCTGACCTCAGCGGCCCCAGTGACCTCATCTTCACCCGCGGGAATCCGgacgaggaagaggaggacatGGACAGCGACACGGACGACATCGATCACCATGCTACAGAGGAGAGTAAAGAGGTCACGTCGTTTGGAAACTTCctgaaggacagaaagaaagtggTGGAGGTGCGAAACAGGAAGTCACAGTGACACCAGGAGGAAGTGCGAGTCCACGGTCCACTCCTTCACCCTTGACCTTGACCTTTGAACTCTTTACCACTGTATATTTATCGCATTTACATTCTCTCGTGTTCTGTGCTGGTCGGTTCTGTGATAGAACCCGGAGTCGGATCTTAAAGCTCCGAGATGTTCACAGTGTGGaggaataaatattaaatatttttatactctCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K24104 GPN; GPN-loop GTPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205166 lncRNA downstream 42058 28873443 ~ 28874318 (-) True G173293
TU205165 lncRNA downstream 44421 28871470 ~ 28871955 (-) True G173292
TU205129 lncRNA downstream 49701 28865913 ~ 28866675 (-) True G173268
TU205162 lncRNA downstream 52209 28862908 ~ 28864167 (-) True G173289
TU205149 lncRNA downstream 53768 28862052 ~ 28862608 (-) True G173282
TU205103 lncRNA upstream 5065 28933960 ~ 28985241 (-) True G173260
TU205104 lncRNA upstream 5065 28933960 ~ 28983936 (-) False G173260
TU205105 lncRNA upstream 5065 28933960 ~ 28984061 (-) False G173260
TU205107 lncRNA upstream 85454 29014349 ~ 29014929 (-) True G173262
TU205226 lncRNA upstream 141140 29070035 ~ 29071425 (-) True G173338
XM_026925987.2 mRNA downstream 7824 28900904 ~ 28908552 (-) False stmn4l
XM_034308308.1 mRNA downstream 31267 28882252 ~ 28885109 (-) True il17a/f2
XM_034308077.1 mRNA downstream 38495 28867671 ~ 28877881 (-) True lrrc57
XM_034308072.1 mRNA downstream 56365 28800742 ~ 28860011 (-) False ralgapa1
XM_034308074.1 mRNA downstream 56366 28798149 ~ 28860010 (-) False ralgapa1
XM_034307851.1 mRNA upstream 58464 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA upstream 58464 28987359 ~ 28996156 (-) False khk
XM_034307852.1 mRNA upstream 58464 28987359 ~ 28996155 (-) False khk
XM_034308219.1 mRNA upstream 143809 29072704 ~ 29075467 (-) True mrpl57
XM_034308220.1 mRNA upstream 143809 29072704 ~ 29074793 (-) False mrpl57
XR_004578919.1 other downstream 7824 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 7824 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 7824 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 7824 28900904 ~ 28908552 (-) True stmn4l
TU204662 other downstream 1003832 27912237 ~ 27912544 (-) True G172919
TU205341 other upstream 307024 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 398031 29326926 ~ 29329076 (-) False smyd3

Expression Profile