RNA id: XM_034307786.1


Basic Information

Item Value
RNA id XM_034307786.1
length 1620
RNA type mRNA
GC content 0.58
exon number 9
gene id tfb2m
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29332256 ~ 29344637 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGCGCATTGAAACACGGCCCAAGGAGCTGCTTCCGGAGTTTGTCCAATCACAGCGCaggggggcgtggcctgtcgGAATACGGGTGGGGAAGAGTTAGCGTTGCGCTGCACGCGCGTGTTCAATGTGACATTACCGTGTTTGTGGATGTGCGGAGATGCGGTGCGGCTGCGCTCCTCTGCCAGCTGCGTGACCTCACACTCCTGCTCAGcagtGAGAGGTCCATCATGTCGGTGTGTGGTAGGAGCAGGGTTCTGGTGCTGTCTGCGCGGGTTCTGTTAGGCCCGCCCCTGGTGTCAGGTCGGTGTGTGTGGCGCGCTCTGTCCTCGTCAGCGAGTGTGCTGTCGGTCGGGGAGTGGAGGAGAACCTCGGCGGGCGGATGCAGGGTGGAGCAGACGTCTCGGTCCTCGGGGAGAACGTGCAGGAACCTCTCCGCCGCCGCCGCCAACTTCCTGAATCAGCTCCGCCCCCTGAGCCGCTACGACCCGCTGGACCTGGGAGAGGTGGAGGAGAACACGCGCAAGGCCCTCACCTGCAAACACCTGAGACGCTTCATCATCGACCCCGAGCTCGCACACGTCGTCACCGAGCACCTCACACCCGACATCGAAGAGGGCAAGGCCGTCATATTCGAGTGCaacccaggaccgGGTGTGTTAACCCGCACACTGCTGAACTGTGGAGCTCACAGAGTGGTGGCGCTGGAGAGTGATAAATCCTTCCTCCCTGAGCTGCAGgagttGGAGGGTAAGCTGGACGGACAGTTGCAGGTGATCCACTGTGATTTCTTTAAGCTGGATCCGATTGGTCAGGGCAGCATGAAGCCTCCTGCCATGTTCTCTGAGAAACTCTTCAGCGATCTCGGGATCTGTGAGGTGCCGTggacagcagacgtGCCGGTGAAGGTGGTGGGGATTTTCTCTCAGAGGAACGAGAGGAACATGTTGTGGAAACTCGTCTATGCTCTGTACGAGCGCCTGTCTGTGTTCCGCTACGGCCGAGTGGAGCTCATCATGTtcatcagtgagagagagtacaccaagcTGGCAGCGAGACCTGGAGATTACAGGAACTATCAGGCTCTGAGCGCTCTGTGGCAGATGGCGTGTGATATCGAGCTGCTGCACCGGGAGCCATGGTCGTCTTTTGTTACAGCGTCGAAGCACGGAGGTCCTGCGATCCCCAAGAGCACTcaTGTTCCTAATGATCACCTGTGCTTGGTGAGGATCACTCCTCGTGAAGATTTCTTCTCCTCCACCGTCACTCCCTTTAACAGCAGCACGCTGGTGATGATGGTCAAACAGTGTCTCACTAAACGCCGCTGCAGACTCATCGACAAGCTCGATTCGTGGAGCGCGGGCAGCGGCACAGACGTCCTGCTGCAGATGGGACTGTTTGAGGACGTGATGACGGGACAGATTTCCCCGAGCGAGTACAAACGCCTGTTCGAGCTGATGGAGAAATCAGAGGAGTTCACACAGAGCTGGCTTTACGACGAGATCCTGGAGAACACCAAAAACACGGGCTGCGGATAAAAACtacacgttcacacacacacacacacatgcacacacacgttcacacacacgcacacacacacacacacacacacacatgcac

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031167 rRNA methylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function

KEGG:

id description
K17653 TFB2M; dimethyladenosine transferase 2, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205283 lncRNA upstream 27843 29275962 ~ 29304413 (+) True G173386
TU205271 lncRNA upstream 86691 29245343 ~ 29245565 (+) True G173374
TU205270 lncRNA upstream 87295 29244073 ~ 29244961 (+) True G173373
TU205268 lncRNA upstream 110607 29221053 ~ 29221649 (+) True G173371
TU205050 lncRNA upstream 158792 29168766 ~ 29173464 (+) True LOC117598323
TU205312 lncRNA downstream 9488 29354125 ~ 29357731 (+) True G173408
XM_026912078.2 mRNA upstream 88900 29175671 ~ 29243356 (+) True kif26ba
XM_026912079.2 mRNA upstream 88900 29175671 ~ 29243356 (+) False kif26ba
XM_034307891.1 mRNA upstream 174708 29150637 ~ 29157548 (+) False LOC117598241
XM_034308250.1 mRNA downstream 1817 29346454 ~ 29359619 (+) True LOC117598322
XM_034308114.1 mRNA downstream 15372 29360009 ~ 29368790 (+) True LOC113525415
XM_034308251.1 mRNA downstream 25295 29369932 ~ 29376033 (+) True LOC117595705
TU205058 other upstream 193480 29093491 ~ 29138776 (+) False nrde2
TU205054 other upstream 259167 29069720 ~ 29073089 (+) True G173221
trnak-uuu_7 other upstream 1606977 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403450.2 other upstream 1866607 27156343 ~ 27465649 (+) False nrxn3a

Expression Profile