RNA id: XM_034307828.1


Basic Information

Item Value
RNA id XM_034307828.1
length 8963
RNA type mRNA
GC content 0.51
exon number 42
gene id hectd1
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21598109 ~ 21649666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGGTGAGGTAAAGCCGGCCAGATTTCCTGTGCGCGCGGCGGACTGAAGCGGGCAGGCCTCGCGCTCGCGCAGAACTTTACGCTCCCGGATTTGTCGGTGAAGAATTCATGAACCTGCAAGAGGACCAGTGACTGCTCATACTCTTTTTCTCATCTGACCGGCGGAAGCCGTGACTGGGTATCATGGCCGATGTGGACCCGGACACACTGCTGGAATGGCTGCAGATGGGGCAGGGCGACGAGCGCGACATGCAGCTCATCGCCCTGGAGCAGCTCTGCATGCTACTGCTTATGTCAGATAACGTGGACCGCTGCTTTGAGACGTGTCCTCCAAGAACATTTCTTCCAGCCCTTTGTAAGATCTTTCTGGATGAAAGCGCCCCTGACAATGTTCTGGAAGTGACAGCCAGGGCCATCACCTATTACCTAGATGTGTCGGCAGAGTGCACGCGCAGGATAGTCGGAGTGGACGGAGCCATCAAGGCCCTCTGTAACCGACTGGTGGTGGTAGAGCTCAACAATAGGACTAGCAGAGATCTAGCAGAGCAGTGTGTAAAGGTGCTGGAGCTGATCTGCACACGAGAATCTGGTGCTGTGTTTGAGGCTGGAGGGCTGAACTGTGTTCTGAGTTTCATTAGGGACAGCGGTCACCTAGTGCATAAGGACACACTGCACTCAGCCATGGCAGTGGTGTCTCGACTCTGCAGTAAGATGGAGCCACAAGACTCATCGCTTGAGACGTGTGTGGAGTCCCTGTCCAGTCTGCTCAAGCATGAAGACCACCAGGTTTCCGATGGAGCCCTGCGCTGCTTTGCATCTCTGGCTGATCGTTTCACACGCCGTGGGGTTGATCCAGCTCCGCTGGCGAAGCACGGCCTGAGCGAGGAGCTTCTGTCACGCATGGCTGCTGCAGGAGGTTCAGCCGCTGGTCCTTCCTCCACATGCAAACCAGGCAGAACATCTACAGGAGGTGCCCCCTCTGCCCCTGACTCAAAACTTAGCAACCAGGTGTCCACTATCGTCAGCCTGCTGTCCACCCTGTGCAGGGGCTCACCACTCGTCACCCACGACCTGCTGCGCTCAGAGCTGCCTGACTCGATGGAGAGTGCGCTGCAAGGCGACGAACGCTGTGTGCTGGATACAATGCGTTTGGTAGACCTGTTGTTAGTACTGCTGTTTGAAGGCCGTAAGGCGCTGCCCAAATCCACAGCTGGTTCAGGTGGGCGTATCCCAGGCCTACGGCGCCTTGACAGCTCCGGAGAGCGCTCGCATCGCCAGCTCATTGACTGTATTCGTAGCAAAGACACAGATGCACTCATTGATGCCATAGACACCGGAGcATTTGAAGTTAATTTTATGGATGATGTGGGACAGACACTTTTGAACTGGGCCTCAGCGTTTGGTACACAGGAAATGGTGGAGTTCTTGTGTGAGAGAGGGGCGGATGTCAACAGAGGCCAAAGATCGTCATCGCTGCATTATGCTGCCTGTTTTGGACGACCACAAGTAGCCAAGactttaCTGCGGCATGGAGCCAACCCTGATCTGAGGGATGAAGATGGCAAAACTCCTCTGGACAAGGCCAGGGAGAGGGGACATAGTGAGGTTGTTGCAATTCTCCAGTCTCCTGGAGACTGGATGTGTCCTGTGAACAAGGGGGATGACAAGAAAAAGAAGGATATGaacaaggaggaggaggagggcagTGAGCCAAAAGGAGACCCTGAGATGGCACCCATCTATTTGAAGAGGCTGCTTCCAGTATTTGCACAAACCTTTCAGCAAACCATGCTGCCTTCAATAAGGAAAGCTAGTTTAGCGCTGATCAGGAAGATGGTTCATTACAGTTCTGAAGTGCTGCTTAAGGAAGTGTGTGACTCTGACGCTGGACACAATCTGCCCACCATCCTGGTGGAAATCACTGCTACTGTGCTGGATCAGGAGgatgatgatgatggtcacTTGCTGGCACTGCAGATCATAAGGGATCTGGTTGATAAGGGAGGAGATGTGTTCTTGGACCAGCTGGCCAGACTAGGTGTCATCAATAAGGTATCCACTCTGGCAGGACCTACTTCAGATGACGAGAATGAGGAAGAAGCCAAACCAGAGAAGgAGGATGAACCCCAGGAAGATGCTAAAGAGATTCAGCAGGGCAAGCCCTACCATTGGCGGGACTGGTCCATTATCAGAGGCAGGGACTGTTTATACATATGGAGTGATGCTGCTGCCCTGGAGCTTTCCAACGGTAGCAATGGCTGGTTTCGCTTCATCTTGGATGGCAAATTGGCTACTATGTACTCCAGTGGCAGCCCGGAAGGAGGCTCTGACAGTTCAGAGAGTCGGAGTGAGTTTTTGGAGAAGCTGCAGCGTGCCAGAAGTCAGGTAAAGCCGGTCACTGCTAGCCAACCCATTCTGTCAACAGTGGGACCCACAAAACTCACAGTGGGCAACTGGTCACTCACGTGCCTAAAGGAGGGCGAGATAGCCATTCATAACTCAGATGGTCAGCAGGCCACCATCCTGAAAGAAGATCTACCAGGCTTCGTGTTTGAGTCCAATCGAGGCACCAAGCACTCCTTCACTGCTGAAACGTCTCTTGGGTCAGAATTTGTGACCGGCTGGACTGGAAAACGAGGACGGAAGCTCAAATCTAaattggaaaaaacaaaacaaaagGTGAAGACGATGGCTAGAGATTTGTATGATGACCACTTTAAAGCAGTAGAAAGTATGCCCAGAGGGGTAGTTGTCACCTTGAGAAACATTGCCACTCAGCTTGAGTCTGCCTGGGAGCTGCATACCAACAGACAGTGCATCGAGGGAGAGAACACGTGGCGAGACCTCATGAAAACTGCTTTAGAAAATTTGATAGTGGTTCTCAAGGATGAGAACACCATCTCTCCCTATGAAATGTGCAGCAGTGGCCTTGTGCAAGCACTTTTTACTGTTCTTAATAATAGTGTAGACCTTGATATGAAACATGATTGTAAGCAACTGATGGAGaggataaatgtgtttaaaactgcattcagtgaaaatgaagatgatgaaagcCGACCCGCAGTTGCCTTAATCCGCAAATTAATAGCAGTGCTGGAGTCTATAGAACGGCTACCTCTTCACTTGTATGACACACCTGGCTCAGCATACAACTTGCAGATTCTGACAAGGAGGCTGCGTTTTCGGTTGGAGCGGGCTCCAGGTGAGACAGCCTTAATTGATCGGACTGGCAGGATGCTTAAGATGGAGCCTCTGGCTACTGTTGAGTCTCTGGAGCAGTATCTGCTTAAAATGGTGGCAAAGCAGTGGTATGACTTCGATAGGTCCTCCTTCATCTTTGTTAGGAAATTGAGAGAAGGCCAAAGTTTCACCTTTAGACACCAGCATGACTTTGATGAGAATGGCATTGTATATTGGATTGGCACAAATGCAAAGACTGCATATGAGTGGGTGAACCCTGCAGCTTATGGCCTGGTGGTGGTGACCTCATCTGAGGGCAGGAATCTTCCCTACGGGCGTCTAGAGGACATTCTGAGCAGAGACAGCTCGGCCCTCAACTGCCACACCAATGATGACAAAAACGCCTGGTTTGCTGTGGACCTGGGCCTCTGGGTCATTCCCTCAGCTTACACGCTACGCCATGCTCGTGGCTACGGTCGCTCTGCCCTCCGCAATTGGGTTTTCCAGGTGTCTAAGGATGGGCAGAACTGGATGACTCTTTACACCCATGTGGATGATGGCAGCCTCAATGAGCCAGGGTCAACTGCCACATGGCCTTTGGACCCATCCAAAGATGAGAAGCATGGTTGGAGACACATTCGTATTAAACAGATGGGGAAGAACGCCAGTGGACAAACCCACTACCTCTCACTATCTGGACTGGAGATCTATGGCACAGTCACTGGCGTGTGTGAAGATCAACTTGGTAAAGCTGTGAAGGAGGCAGAAGCTAACCTGCGTCGACAACGCCGCCTATTCCGCTCTCAGGTAATGAAGTACATAGTCCCAGGGGCCCGGGTGGTACGTGGCATTGACTGGAAGTGGAGGGATCAGGACGGCAACCCTCCTGGAGAGGGCACTGTGACTGGAGAGGCCCATAATGGCTGGATTGATGTCACCTGGGATGCTGGTGGCTCGAACTCCTACCGCATGGGTGCGGAAGGGAAGTTTGACCTGAAGTTAGCACCGGGGTACGACCCCGAGTCGGCGCCGTCACCCAAAACTGTTTCGTGCGCTGTTGCAGGCCCGCCGACTCCCTGGAGCAGCCTGGCCAAAAACAACTGTCCGGACAGGGGTGGCCCATCATCGGCATCTTCTGGTCGCAAGGCCAGCAGCAGCTCAGCGTGCAGCGATGTCGGCCTTGGCTCTGCTCGCAGGCTTGAGGGCCTGTCTGAGCAGGGCACACTTGAGGGGGGTGGACCCACGGGGACGGAGGGACAGGAGCCACTTGTGGTTCTCTCCACAGCCGAGGGTGGTTCTGCATCCAGCGAAAGTGCTGAGCCCAAGAGTGAATCAACAGCCATCTCTGTGGGGCCAGTTAGCGTCAGTTCACCCGATGTCAGCTCCGTCTCTGATTCATCTGGCAAGGCTGCAGTGTCCCAGAGGCCCCTGGGCCCAGGCACTGGTGCTCGCCTTTCAGTCAGCTCACTGCTTGCAGCTGGTGCACCTATGAGTTCCAGTGCCAGTGTGCCTAACCTGTCATCGCGTGAGGCCAGTCTCATGGAGTCATTCGTGCGCCGCGCTCCCAACATGGCACGCACCAACGCCACCAACAACATGAACCTGAGCCGCAGCAGCAGTGACAACAATACCAACACAATTGGCCGCAACGTTGCAGCTGCTTCTGCCTCTCCTCTCATGGGTGCACAGAGCTTTCCTAACCTTACCACCACTGGTACCACCTCCACCGTTACAATGTCCACCTCCATAGTAACCAGCAGCAATAATGTAGCCACAGCCACTACAGGTTTGTCCGTCGGCCAGTTGCTCAGTAACACGCTGACGACCAGCCTGACCTCCACATCTAGCGAGAGTGACACAGGTCAGGAGGCTGAGTTTTCGCTCTATGACTTCTTGGATAGCTGTCGGGCAAACACGTTGCTTGCAGACCTAGACGATGAGGAAGATTTGCCTGAACCGGACGACGATGATGACGAGAATGAGGACGACAATCAGGAGGACCAGGAGTATGAGGAAGTTCTGGTACGGTCCAGGGTCAACCTTGGTTACCACGTTCATATACATAGGgaggaagaggaataTGAAACCAAAGGGGGTCGGCGTAGAACGTGGGATGACGATTTTGTGCTGAAACGACAGTTTTCTGCTCTTGTCCCCGCGTTTGACCCCAGACCAGGCCGGACCAACGTCCAGCAAACAACTGATCTGGAAATCCCTACGCCAGGTACACCTCGTTCAGAGGTGCTGGAGGAGGTGGAATGTGCTCCCTCCCCCCATCTAGCTCTTATCTTGAAAGTGGCAGGCCTAGGAACCACACGGGAAGTTGAACTACCTCTCACCAACTACAAATCCACCATTTTCTACTATGTCCAAAAGCTGCTGCAGCTCTCCTGTAACGGCAGCATCAAATCTGACAAGCTTCGACGCATTTGGGAGCCGACGTACACGATAATGTACAGAGAGTTGAAGGACTccgacaaagagaaagaaagcggGAAGATGGGTTGCTGGTCTGTAGAGCATGTGGAACAGTACCTTGGCACAGATGAATTACCAAAGAATGACTTGATAACCTACATGCAGAAGAATGCAGACTCAACTTTCCTGCGCCACTGGAAATTAACCGGCACTAATAAAAGTATTaggaaaaacagaaattgtTCGCAGCTCATAGCTGCATACAAGgatTTCTGTGAACGGGGCTGCAGGTCTTCGGGACTTGGGTCAGGCTCCCTGGCAGTCACCCAGAGCTGCGACATCTTAAGTGGCGCACGTGAGCAACCACAGGCCAAAGCTGGCTCAGCCCAGAGTGCCTGTGGTGTGGAAGATGTGCTGCAGCTGCTGCGGATCCTCTTCATTATTGGAGGCGAGCCAGCGGTTGTCCATACCCTGCAGGAGGATTTGGATGATCTACAGTTCAATGCTTCACCTGAGGAGTTCACcagcaaaaaaattacaacCAAAATTCTGCAACAGATTGAGGAGCCTCTGGCCTTGGCCAGTGGAGCACTTCCAGATTGGTGTGAACAGTTAACCAGCAAGTGTCCTTTCCTTATCCCTTTTGAGACACGGCAGCTCTTCTTCACCTGCACTGCATTTGGAGCCTCCAGGGCAATAGTGTGGCTCCAAAACCGGAGGGAGGCAACCATGGAGCGTACACGACCATCCACTACAGTGAGGCGGGATGAACCAGGCGAGTTCCGTGTTGGCCGCCTCAAACATGAGCGTGTGAAAGTACCACGGGGAGAGAGCATGATGGAGTGGGCCGAGAGTGTCATGCACATCCatgctgacaggaagtctgtacTCGAGGTGGAGTTCCAGGGAGAAGAAGGCACTGGTTTGGGTCCCACACTAGAGTTCTATGCCCTTGTGGCAGCTGAGTTCCAGCGGACCTCACTGGGGATCTGGCTCTGTGATGACGATTTTCCCGATGACGAGTCACGCCAAGTGGATCTCGGTGGCGGCCTGAAACCACCAGGCTATTATGTACAGCGCTCGTGTGGCCTTTTCCCTGCGCCCTTCCCTCAGGATAGTGATGAGCTGGAGCGCATCGCCAAGCTCTTCCTCTTCTTAGGCATCTTCCTGGCCAAGTGCATACAGGACAACCGGCTGGTGGACCTGCCTGTCTCGCAACCTTTCTTCAAGCTGCTCTGCATGGGTGACATCAAGAGCAACATGAGCAAACTTTTGTATGAGACACGCTCAGATTCAGACCGCCGCTTTTCTGACATCCACTCAGAGGCCTCCACTGAAGAAGAACCGTATTTGATGGGCAGCTTTGATGAGAACTCTAAATCCGAGTTCATCTTGGACCCACCAAAGCCCAAACCACCTGCCTGGTATCATGGCATCCTAACCTGGGAAGACTTTGAGTTGGTAAACCCTCACAGAGCACGCTTCCTCAAGGAGATGAAGGAGCTGGCGGTAAAGAGGAGGCAGATACTGGGCAATAAGAGCCTCTCAGAGGATGAGAAGAACACACGGCTACAGGGCCTCATGCTGAAAAACCCAGTGGGCTCAGGCCCACCTCTGAGCGTGGAAGATCTGGGatTAAATTTCCAGTTCTGTCCCTCATCCAAAGTGCATGGCTTTTCAGCAGTGGACCTTAAACCCAATGGAGAGGATGAGaTGGTGACCTTAGACAATGCAGAGGAGTATGTGGAGTTAATGTTTGACTTCTGTATGCACACTGGGATACAGAAGCAAATGGAGGCCTTCAGAGAGGGCTTTAACAGAGTCTTCCTTATGGAGAAACTGAGCTCATTTAGTCCTAAAGAAGTCCAGATGATCCTGTGTGGGAACCAGTCTCCATCCTGGACAGCTGAGGACATTGTCAACTACACAGAGCCCAAACTGGGCTACACTCGGGACAGTCCTGGTTTCCTGCGCTTTGTGCGAGTGCTGTGTGGAATGTGCTCGGATGAGAGGAAAGCCTTCCTCCAATTCACAACAGGCTGCTCAACTCTGCCCCCTGGTGGTCTTGCCAACTTGCATCCCCGTCTCACAATTGTCCGCAAGGTGGATGCGACTGATGCCAGCTACCCCTCAGTAAACACATGTGTGCACTATCTGAAGTTGCCAGAGTATTCCTCTGAGGAGATCATGAGAGAGCGCCTCCTCGCCGCCACTATGGAAAAGGGCTTCCACCTGAACTGAGCATGCTCCCTGCACCGCTGACCAACTGCATATGTTGATGAAGCCTGTCGTGTTttgttgcagaaaaaaaaaaatacaaaagctgTGCTCGCCCATGATTTTCTCTCCTTTGTCAAAAGAGCCTACGTTTACATCTGTAAGCAAAAGGAAGCCCATCTCAGCTCCACTAGCTACTGAAACAGATTAAGGTCATGTCTGCAGCCCATGTTACCCCACTTACACCTCTTGGTGGGACTGCACTGCATTAAGGGCTTGAGCCGCTAGTAGCCAAGGGCAGTTCTCCTCCGTTTACTTTCACACCCCAGCTCTGAAAGCgtgtgtaaagttcagcataggttttcttttcagattacagtacacacatacCAGCCCCATTTCCCCAAGAGGGGGCACGTAAGCACCTGCTTCTGTAGAGCTAACTGTCAAATGTTTGGACATTTTTCCTGATTTTAAGTTTTACTAGTGCCTGCCTTGTTTGAAATATTaggttttttcccctcatcttGTTTTGCATTCAGCATACAATCATTCACATGCTGTTTTCCCCCACttatttcctcttcttttttttttcctatttctcCTCTCCTAGCTGTTACtgtgtatgtttaaaatgttcatcACCCTCCTAAAAGGATCAAACTCCCTGAGtgcatttgtgtaattttacaATAAAGCTACAGAGACATAAACACTGGTTGTGTGCAAGGCACattggaaaaaaaggaaaaaatgaaaagctaTGCTTCTCCTTGTATTTTCTTtgtatattataaacatttatttaactcaAGTTGCAGTTTGAAgtaaacaaatattttcaaatgtgtATGCtccaaaataatcattaaaatgtttgcaAAGTATGATTAGTGCTGTGTGTTCCATTTAGCTACTTGCATTTTAGTCATAATCTTTGAGTTGATGTTAAGTCCAGAAGCCAGTTTCATGTACATAACAAATATGACTAGAACTATGTAATGTTTAGCATTATGTAGCTGCAGTGTAAACAGTCTATGAACAAATACAGTTAAACTGTGAGGCCAATGACAGCATGGATGGGGTACAGAGttgctgaataaaatgtttactgtttaaagccagtatttgtttaaaaaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200781 lncRNA downstream 58564 21539301 ~ 21539545 (-) True G169611
XR_003403081.2 lncRNA downstream 83120 21507393 ~ 21514989 (-) False LOC113529764
TU200770 lncRNA downstream 83748 21506435 ~ 21514361 (-) True LOC113529764
TU200582 lncRNA downstream 225068 21368440 ~ 21373041 (-) True G169454
TU200563 lncRNA downstream 279669 21318226 ~ 21318440 (-) True G169435
TU200827 lncRNA upstream 111040 21760524 ~ 21762786 (-) True G169647
TU200828 lncRNA upstream 115474 21764958 ~ 21765221 (-) True G169648
TU200830 lncRNA upstream 116618 21766102 ~ 21767152 (-) True G169650
TU200831 lncRNA upstream 118204 21767688 ~ 21767925 (-) True G169651
TU200833 lncRNA upstream 118885 21768369 ~ 21768742 (-) True G169653
XM_034307838.1 mRNA downstream 6742 21557083 ~ 21591367 (-) False strn3
XM_034307837.1 mRNA downstream 6745 21557083 ~ 21591364 (-) False strn3
XM_034307836.1 mRNA downstream 6746 21557083 ~ 21591363 (-) True strn3
XM_026919467.2 mRNA downstream 6750 21557083 ~ 21591359 (-) False strn3
XM_026919466.2 mRNA downstream 6750 21557083 ~ 21591359 (-) False strn3
XM_034308310.1 mRNA upstream 3229 21652713 ~ 21737438 (-) False heatr5a
XM_026919463.2 mRNA upstream 3229 21652713 ~ 21737362 (-) False heatr5a
XM_026919464.2 mRNA upstream 3229 21652713 ~ 21737362 (-) False heatr5a
XM_026919462.2 mRNA upstream 3229 21652713 ~ 21737362 (-) True heatr5a
XM_026919465.2 mRNA upstream 3229 21652713 ~ 21716322 (-) False heatr5a
TU200304 other downstream 780893 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 865057 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 1032310 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 1267365 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 1579415 20013579 ~ 20018694 (-) True srp14
TU201211 other upstream 466081 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 1206010 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 3151599 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 3609355 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 3609355 25258839 ~ 25259362 (-) True G171569

Expression Profile