RNA id: XM_034307833.1


Basic Information

Item Value
RNA id XM_034307833.1
length 7384
RNA type mRNA
GC content 0.52
exon number 38
gene id hectd1
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21598109 ~ 21649666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATTTCGCTCTGAACAGTCAGCTGCTTCCCCGTTCACTTTGACCTTTAGCTTTGTGGATATATGAAAGAAAGGGGATGAAGAAGCGTTAACTTTTTGGTTTCTCGACTGCTATATTTACGGTCTGATCTAAAAGCAATTCTGATTTCTCAGCGTCTACTGAAAAACGGTGAAGAATTCATGAACCTGCAAGAGGACCAGTGACTGCTCATACTCTTTTTCTCATCTGACCGGCGGAAGCCGTGACTGGGTATCATGGCCGATGTGGACCCGGACACACTGCTGGAATGGCTGCAGATGGGGCAGGGCGACGAGCGCGACATGCAGCTCATCGCCCTGGAGCAGCTCTGCATGCTACTGCTTATGTCAGATAACGTGGACCGCTGCTTTGAGACGTGTCCTCCAAGAACATTTCTTCCAGCCCTTTGTAAGATCTTTCTGGATGAAAGCGCCCCTGACAATGTTCTGGAAGTGACAGCCAGGGCCATCACCTATTACCTAGATGTGTCGGCAGAGTGCACGCGCAGGATAGTCGGAGTGGACGGAGCCATCAAGGCCCTCTGTAACCGACTGGTGGTGGTAGAGCTCAACAATAGGACTAGCAGAGATCTAGCAGAGCAGTGTGTAAAGGTGCTGGAGCTGATCTGCACACGAGAATCTGGTGCTGTGTTTGAGGCTGGAGGGCTGAACTGTGTTCTGAGTTTCATTAGGGACAGCGGTCACCTAGTGCATAAGGACACACTGCACTCAGCCATGGCAGTGGTGTCTCGACTCTGCAGTAAGATGGAGCCACAAGACTCATCGCTTGAGACGTGTGTGGAGTCCCTGTCCAGTCTGCTCAAGCATGAAGACCACCAGGTTTCCGATGGAGCCCTGCGCTGCTTTGCATCTCTGGCTGATCGTTTCACACGCCGTGGGGTTGATCCAGCTCCGCTGGCGAAGCACGGCCTGAGCGAGGAGCTTCTGTCACGCATGGCTGCTGCAGGAGGTTCAGCCGCTGGTCCTTCCTCCACATGCAAACCAGGCAGAACATCTACAGGAGGTGCCCCCTCTGCCCCTGACTCAAAACTTAGCAACCAGGTGTCCACTATCGTCAGCCTGCTGTCCACCCTGTGCAGGGGCTCACCACTCGTCACCCACGACCTGCTGCGCTCAGAGCTGCCTGACTCGATGGAGAGTGCGCTGCAAGGCGACGAACGCTGTGTGCTGGATACAATGCGTTTGGTAGACCTGTTGTTAGTACTGCTGTTTGAAGGCCGTAAGGCGCTGCCCAAATCCACAGCTGGTTCAGGTGGGCGTATCCCAGGCCTACGGCGCCTTGACAGCTCCGGAGAGCGCTCGCATCGCCAGCTCATTGACTGTATTCGTAGCAAAGACACAGATGCACTCATTGATGCCATAGACACCGGAGcATTTGAAGTTAATTTTATGGATGATGTGGGACAGACACTTTTGAACTGGGCCTCAGCGTTTGGTACACAGGAAATGGTGGAGTTCTTGTGTGAGAGAGGGGCGGATGTCAACAGAGGCCAAAGATCGTCATCGCTGCATTATGCTGCCTGTTTTGGACGACCACAAGTAGCCAAGactttaCTGCGGCATGGAGCCAACCCTGATCTGAGGGATGAAGATGGCAAAACTCCTCTGGACAAGGCCAGGGAGAGGGGACATAGTGAGGTTGTTGCAATTCTCCAGTCTCCTGGAGACTGGATGTGTCCTGTGAACAAGGGGGATGACAAGAAAAAGAAGGATATGaacaaggaggaggaggagggcagTGAGCCAAAAGGAGACCCTGAGATGGCACCCATCTATTTGAAGAGGCTGCTTCCAGTATTTGCACAAACCTTTCAGCAAACCATGCTGCCTTCAATAAGGAAAGCTAGTTTAGCGCTGATCAGGAAGATGGTTCATTACAGTTCTGAAGTGCTGCTTAAGGAAGTGTGTGACTCTGACGCTGGACACAATCTGCCCACCATCCTGGTGGAAATCACTGCTACTGTGCTGGATCAGGAGgatgatgatgatggtcacTTGCTGGCACTGCAGATCATAAGGGATCTGGTTGATAAGGGAGGAGATGTGTTCTTGGACCAGCTGGCCAGACTAGGTGTCATCAATAAGGTATCCACTCTGGCAGGACCTACTTCAGATGACGAGAATGAGGAAGAAGCCAAACCAGAGAAGgAGGATGAACCCCAGGAAGATGCTAAAGAGATTCAGCAGGGCAAGCCCTACCATTGGCGGGACTGGTCCATTATCAGAGGCAGGGACTGTTTATACATATGGAGTGATGCTGCTGCCCTGGAGCTTTCCAACGGTAGCAATGGCTGGTTTCGCTTCATCTTGGATGGCAAATTGGCTACTATGTACTCCAGTGGCAGCCCGGAAGGAGGCTCTGACAGTTCAGAGAGTCGGAGTGAGTTTTTGGAGAAGCTGCAGCGTGCCAGAAGTCAGGTAAAGCCGGTCACTGCTAGCCAACCCATTCTGTCAACAGTGGGACCCACAAAACTCACAGTGGGCAACTGGTCACTCACGTGCCTAAAGGAGGGCGAGATAGCCATTCATAACTCAGATGGTCAGCAGGCCACCATCCTGAAAGAAGATCTACCAGGCTTCGTGTTTGAGTCCAATCGAGGCACCAAGCACTCCTTCACTGCTGAAACGTCTCTTGGGTCAGAATTTGTGACCGGCTGGACTGGAAAACGAGGACGGAAGCTCAAATCTAaattggaaaaaacaaaacaaaagGTGAAGACGATGGCTAGAGATTTGTATGATGACCACTTTAAAGCAGTAGAAAGTATGCCCAGAGGGGTAGTTGTCACCTTGAGAAACATTGCCACTCAGCTTGAGTCTGCCTGGGAGCTGCATACCAACAGACAGTGCATCGAGGGAGAGAACACGTGGCGAGACCTCATGAAAACTGCTTTAGAAAATTTGATAGTGGTTCTCAAGGATGAGAACACCATCTCTCCCTATGAAATGTGCAGCAGTGGCCTTGTGCAAGCACTTTTTACTGTTCTTAATAATAGTGTAGACCTTGATATGAAACATGATTGTAAGCAACTGATGGAGaggataaatgtgtttaaaactgcattcagtgaaaatgaagatgatgaaagcCGACCCGCAGTTGCCTTAATCCGCAAATTAATAGCAGTGCTGGAGTCTATAGAACGGCTACCTCTTCACTTGTATGACACACCTGGCTCAGCATACAACTTGCAGATTCTGACAAGGAGGCTGCGTTTTCGGTTGGAGCGGGCTCCAGGTGAGACAGCCTTAATTGATCGGACTGGCAGGATGCTTAAGATGGAGCCTCTGGCTACTGTTGAGTCTCTGGAGCAGTATCTGCTTAAAATGGTGGCAAAGCAGTGGTATGACTTCGATAGGTCCTCCTTCATCTTTGTTAGGAAATTGAGAGAAGGCCAAAGTTTCACCTTTAGACACCAGCATGACTTTGATGAGAATGGCATTGTATATTGGATTGGCACAAATGCAAAGACTGCATATGAGTGGGTGAACCCTGCAGCTTATGGCCTGGTGGTGGTGACCTCATCTGAGGGCAGGAATCTTCCCTACGGGCGTCTAGAGGACATTCTGAGCAGAGACAGCTCGGCCCTCAACTGCCACACCAATGATGACAAAAACGCCTGGTTTGCTGTGGACCTGGGCCTCTGGGTCATTCCCTCAGCTTACACGCTACGCCATGCTCGTGGCTACGGTCGCTCTGCCCTCCGCAATTGGGTTTTCCAGGTGTCTAAGGATGGGCAGAACTGGATGACTCTTTACACCCATGTGGATGATGGCAGCCTCAATGAGCCAGGGTCAACTGCCACATGGCCTTTGGACCCATCCAAAGATGAGAAGCATGGTTGGAGACACATTCGTATTAAACAGATGGGGAAGAACGCCAGTGGACAAACCCACTACCTCTCACTATCTGGACTGGAGATCTATGGCACAGTCACTGGCGTGTGTGAAGATCAACTTGGTAAAGCTGTGAAGGAGGCAGAAGCTAACCTGCGTCGACAACGCCGCCTATTCCGCTCTCAGGTAATGAAGTACATAGTCCCAGGGGCCCGGGTGGTACGTGGCATTGACTGGAAGTGGAGGGATCAGGACGGCAACCCTCCTGGAGAGGGCACTGTGACTGGAGAGGCCCATAATGGCTGGATTGATGTCACCTGGGATGCTGGTGGCTCGAACTCCTACCGCATGGGTGCGGAAGGGAAGTTTGACCTGAAGTTAGCACCGGGGTACGACCCCGAGTCGGCGCCGTCACCCAAAACTGTTTCGTGCGCTGTTGCAGGCCCGCCGACTCCCTGGAGCAGCCTGGCCAAAAACAACTGTCCGGACAGGGGTGGCCCATCATCGGCATCTTCTGGTCGCAAGGCCAGCAGCAGCTCAGCGTGCAGCGATGTCGGCCTTGGCTCTGCTCGCAGGCTTGAGGGCCTGTCTGAGCAGGGCACACTTGAGGGGGGTGGACCCACGGGGACGGAGGGACAGGAGCCACTTGTGGTTCTCTCCACAGCCGAGGGTGGTTCTGCATCCAGCGAAAGTGCTGAGCCCAAGAGTGAATCAACAGCCATCTCTGTGGGGCCAGTTAGCGTCAGTTCACCCGATGTCAGCTCCGTCTCTGATTCATCTGGCAAGGCTGCAGTGTCCCAGAGGCCCCTGGGCCCAGGCACTGGTGCTCGCCTTTCAGTCAGCTCACTGCTTGCAGCTGGTGCACCTATGAGTTCCAGTGCCAGTGTGCCTAACCTGTCATCGCGTGAGGCCAGTCTCATGGAGTCATTCGTGCGCCGCGCTCCCAACATGGCACGCACCAACGCCACCAACAACATGAACCTGAGCCGCAGCAGCAGTGACAACAATACCAACACAATTGGCCGCAACGTTGCAGCTGCTTCTGCCTCTCCTCTCATGGGTGCACAGAGCTTTCCTAACCTTACCACCACTGGTACCACCTCCACCGTTACAATGTCCACCTCCATAGTAACCAGCAGCAATAATGTAGCCACAGCCACTACAGGTTTGTCCGTCGGCCAGTTGCTCAGTAACACGCTGACGACCAGCCTGACCTCCACATCTAGCGAGAGTGACACAGGTCAGGAGGCTGAGTTTTCGCTCTATGACTTCTTGGATAGCTGTCGGGCAAACACGTTGCTTGCAGACCTAGACGATGAGGAAGATTTGCCTGAACCGGACGACGATGATGACGAGAATGAGGACGACAATCAGGAGGACCAGGAGTATGAGGAAGTTCTGGTACGGTCCAGGGTCAACCTTGGTTACCACGTTCATATACATAGGgaggaagaggaataTGAAACCAAAGGGGGTCGGCGTAGAACGTGGGATGACGATTTTGTGCTGAAACGACAGTTTTCTGCTCTTGTCCCCGCGTTTGACCCCAGACCAGGCCGGACCAACGTCCAGCAAACAACTGATCTGGAAATCCCTACGCCAGGTACACCTCGTTCAGAGGTGCTGGAGGAGGTGGAATGTGCTCCCTCCCCCCATCTAGCTCTTATCTTGAAAGTGGCAGGCCTAGGAACCACACGGGAAGTTGAACTACCTCTCACCAACTACAAATCCACCATTTTCTACTATGTCCAAAAGCTGCTGCAGCTCTCCTGTAACGGCAGCATCAAATCTGACAAGCTTCGACGCATTTGGGAGCCGACGTACACGATAATGTACAGAGAGTTGAAGGACTccgacaaagagaaagaaagcggGAAGATGGGTTGCTGGTCTGTAGAGCATGTGGAACAGTACCTTGGCACAGATGAATTACCAAAGAATGACTTGATAACCTACATGCAGAAGAATGCAGACTCAACTTTCCTGCGCCACTGGAAATTAACCGGCACTAATAAAAGTATTaggaaaaacagaaattgtTCGCAGCTCATAGCTGCATACAAGgatTTCTGTGAACGGGGCTGCAGGTCTTCGGGACTTGGGTCAGGCTCCCTGGCAGTCACCCAGAGCTGCGACATCTTAAGTGGCGCACGTGAGCAACCACAGGCCAAAGCTGGCTCAGCCCAGAGTGCCTGTGGTGTGGAAGATGTGCTGCAGCTGCTGCGGATCCTCTTCATTATTGGAGGCGAGCCAGCGGTTGTCCATACCCTGCAGGAGGATTTGGATGATCTACAGTTCAATGCTTCACCTGAGGAGTTCACcagcaaaaaaattacaacCAAAATTCTGCAACAGATTGAGGAGCCTCTGGCCTTGGCCAGTGGAGCACTTCCAGATTGGTGTGAACAGTTAACCAGCAAGTGTCCTTTCCTTATCCCTTTTGAGACACGGCAGCTCTTCTTCACCTGCACTGCATTTGGAGCCTCCAGGGCAATAGTGTGGCTCCAAAACCGGAGGGAGGCAACCATGGAGCGTACACGACCATCCACTACAGTGAGGCGGGATGAACCAGGCGAGTTCCGTGTTGGCCGCCTCAAACATGAGCGTGTGAAAGTACCACGGGGAGAGAGCATGATGGAGTGGGCCGAGAGTGTCATGCACATCCatgctgacaggaagtctgtacTCGAGGTGGAGTTCCAGGGAGAAGAAGGCACTGGTTTGGGTCCCACACTAGAGTTCTATGCCCTTGTGGCAGCTGAGTTCCAGCGGACCTCACTGGGGATCTGGCTCTGTGATGACGATTTTCCCGATGACGAGTCACGCCAAGTGGATCTCGGTGGCGGCCTGAAACCACCAGGCTATTATGTACAGCGCTCGTGTGGCCTTTTCCCTGCGCCCTTCCCTCAGGATAGTGATGAGCTGGAGCGCATCGCCAAGCTCTTCCTCTTCTTAGGCATCTTCCTGGCCAAGTGCATACAGGACAACCGGCTGGTGGACCTGCCTGTCTCGCAACCTTTCTTCAAGCTGCTCTGCATGGGTGACATCAAGAGCAACATGAGCAAACTTTTGTATGAGACACGCTCAGATTCAGACCGCCGCTTTTCTGACATCCACTCAGAGGCCTCCACTGAAGAAGAACCGTATTTGATGGGCAGCTTTGATGAGAACTCTAAATCCGAGTTCATCTTGGACCCACCAAAGCCCAAACCACCTGCCTGGTATCATGGCATCCTAACCTGGGAAGACTTTGAGTTGGTAAACCCTCACAGAGCACGCTTCCTCAAGGAGATGAAGGAGCTGGCGGTAAAGAGGAGGCAGATACTGGGCAATAAGAGCCTCTCAGAGGATGAGAAGAACACACGGCTACAGGGCCTCATGCTGAAAAACCCAGTGGGCTCAGGCCCACCTCTGAGCGTGGAAGATCTGGatTAAATTTCCAGTTCTGTCCCTCATCCAAAGTGCATGGCTTTTCAGCAGTGGACCTTAAACCCAATGGAGAGGATGAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200781 lncRNA downstream 61872 21539301 ~ 21539545 (-) True G169611
XR_003403081.2 lncRNA downstream 86428 21507393 ~ 21514989 (-) False LOC113529764
TU200770 lncRNA downstream 87056 21506435 ~ 21514361 (-) True LOC113529764
TU200582 lncRNA downstream 228376 21368440 ~ 21373041 (-) True G169454
TU200563 lncRNA downstream 282977 21318226 ~ 21318440 (-) True G169435
TU200827 lncRNA upstream 110858 21760524 ~ 21762786 (-) True G169647
TU200828 lncRNA upstream 115292 21764958 ~ 21765221 (-) True G169648
TU200830 lncRNA upstream 116436 21766102 ~ 21767152 (-) True G169650
TU200831 lncRNA upstream 118022 21767688 ~ 21767925 (-) True G169651
TU200833 lncRNA upstream 118703 21768369 ~ 21768742 (-) True G169653
XM_034307838.1 mRNA downstream 10050 21557083 ~ 21591367 (-) False strn3
XM_034307837.1 mRNA downstream 10053 21557083 ~ 21591364 (-) False strn3
XM_034307836.1 mRNA downstream 10054 21557083 ~ 21591363 (-) True strn3
XM_026919467.2 mRNA downstream 10058 21557083 ~ 21591359 (-) False strn3
XM_026919466.2 mRNA downstream 10058 21557083 ~ 21591359 (-) False strn3
XM_034308310.1 mRNA upstream 3047 21652713 ~ 21737438 (-) False heatr5a
XM_026919463.2 mRNA upstream 3047 21652713 ~ 21737362 (-) False heatr5a
XM_026919464.2 mRNA upstream 3047 21652713 ~ 21737362 (-) False heatr5a
XM_026919462.2 mRNA upstream 3047 21652713 ~ 21737362 (-) True heatr5a
XM_026919465.2 mRNA upstream 3047 21652713 ~ 21716322 (-) False heatr5a
TU200304 other downstream 784201 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 868365 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 1035618 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 1270673 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 1582723 20013579 ~ 20018694 (-) True srp14
TU201211 other upstream 465899 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 1205828 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 3151417 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 3609173 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 3609173 25258839 ~ 25259362 (-) True G171569

Expression Profile