RNA id: XM_034307880.1


Basic Information

Item Value
RNA id XM_034307880.1
length 6123
RNA type mRNA
GC content 0.54
exon number 28
gene id tiam2a
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 27962420 ~ 28056561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCTGAGAGCTCTTTTTTTGTCCGAGTCATGAGTTCGAGAGCTGGATTTCTCTCGCTCGCTCTTCAAAGCATGTTAGATTAAAGCTTTTCCACACAGATGAATTGGACAGAGGTGGATTGCTAGCTGACCAAAAGACGATGATTACTACTCAAATTGCGAAGCTCTAGCTGTGTAGTGATTACTAGAACTGGTCAGGGATGGGAAACTCGGAGAGCCAGTACAGCATACAGGGGTCTCGGAGCAGTAGCTTCACGCTCCCTAACAGACAGAAGCCCTATTCAGTGAAGCTCCATTCTTCCAAAGAAGAGGTTTTATCATCTCATGGCTGGTGGAGGACAGGATCACGGGTTTCTGGCTTCAAATCCAAAACGGTATCTCGTGGCTGTTTGTCGCAGCACAAGTCTAATCAGTCGTCCATATCGAGGCATTGTGACTACATTGCCAAAGGAAGAGAAGCAAAGAGAAGGATTAGCGCTCAGTGGAACGGTTCACCAAGAGCACATGTAATGCCGCCGTCCGAGAACGGTCGCCTCGAGGAAAATGGACGGGATTGTAACGGTCACACTGTAAACGGATACAAGACACCCGAGAGGAAGCCCAAACCGGAGGAACTGGAAGATCACAGCAGCCCGAGAGTCGTGATCAAGAGTGACGGCAGCGTTCGGGTCGAGTTTAGTCAGATCTCTAAAAACTCAACGCTTCCGGATGAGAACGGAGGTCCCGTCCAGCTGCTGAAGTTTTCCCCCACGTCACACTCCGTGCCCACCCCGGATCGTGAATCCGCTCCAGCGGCGAACAGCCCCACCACCAGGACCAGCAAGCGAGGCTCACTGAGCTCAGAAGGCAGCTGGTACGACTCGCCCTGGGGTCCCGGTGCCGAGCTGAACGACGACGACGACGTCAGCGCATCGCCCAACAGGGTATCAGAAACGCTTCCCTCCGTGCGCATCGAGTACTTCGACGAGCAGCTACCTTCTCGCCATCTTTACCGGGACCCCGGCATGGCCACCACCTTTCCCAGCGCCAAAGATCTGACGCTTGCAAATGAGATGTCGTTCAAACACAGGTCctcgtttgtgtgtgtgatggaagaACCTGTTCTAGACGAGTCCTCTGGGGCAAGGCAGTACTCTTCCTTCACGTTACCGTGTCCCAAACCCAAACCCATCACAGAGAACACCGGCACGAAGGAAGCGATCAGGAACAGAATGAGAAGGCTCAGTGATTGGACCGGGAGCCTGACCAGAAGGAAGAAGAAGTCGAAGGAGCCGAGATATAAAGAGCCTATCGATTGTTTCGACAGCGGTATAGACGGTCTAACGGCTGACACCAGCTCCCCCTCTCAGGTGTCCAGTCTGCTGGGGTACACCAAGGTTCAGTCTCGGGCCCGCTCCCAGTCCCAGGTTCTGCCCTCCTGCGGCGGTTCTGTCGGCGCCCTCCAGCCGGGCACGGACGCTTTGCGGCAAAACATCTACGACAACTTCATGAGGGAGCTGGAGACGAGCCACACGGCTGCAGGAAGCGGCGAGGAAAGAGGCGAGAACTCGGCAGAGGACACAGAGAGCAGCAGTCAGGAGACGGTGGGCTCGCTGGAGCAGCTGGATCTGCTGTGCGAGAAGGAGCAGGGCGTGGTGAGGAGAGCCGGGTGGTTGACCTTTAAACCTCTGCTCACGCTGCACAAAGACCGCAAGCTGGAACTGGTGGCCAGGCGCAAGTGGAAACAGTACTGGGTGACTCTTAAAGGCTGCACTCTGCTGTTTTACGAGACGTATGGGAAAGGTTCTCCAGAGCAGGAGACTTTACCAAGTTACGCTCTGCTGGCCGAGGACGGAATAGTCCAGGCCATCCCCGAACACCCGAAGAAGGAGAACGTGTTCTGCCTCAGCAATGCCTACGGTGACGTCTACCTCTTTCAGGCCACTAGCCAAACGGATTTAGAGAACTGGGTTACGGCGATCCACTCGGCCAGCGCGTCTCTGTTCGCCAAGCGCCATGGCAAGGAGGACACGCTGCTCCTGCTCCGAGGACAGATCCGCAGTCTGCTGCAGAAGATCGACATGGACGGAAAGATGAAGAAGATGGCGGAGCTCCAGCTGTCTATTGTAACAGATCCAAAGAACAGGAAGGCCATCGAGAACCAGATCCAGCAGTGGGATCAGAACCTGGAGAGGTTCAACATCGATTTGTTCCGCATGCGCTGCTACCTGTCCAGCCTGCAGGGAGGAGAGCTGCCCAACCCCAAGAGCCTCCTGGCCGCCGCCAGCCGTCCCTCTAAAGCTGCTCTCGGCCGCCTGGGAATCTTCTCCGTCTCCTCTTTCCACGCGCTGatctgCTCCAGAGACGAGGCCACGCTGAGGAAAcgttctctgtctctgtcccagAGAAGCCGCAGTAGGAGAGGAGTGTTCTCCTCGCTCAAAGGCCTGGACAGTTTGACCAAACGCAGCCGAGAGAAGAGACCCTGCGCCTCACAGGATTGCATTTCCATGAGCTACTGCTCTCACACTGGTGTCTGTGAGGTTTTTGACAGCGCTGCAGGAGAACACTTCGGCTTTGTTCCTCCGTACAGCAGAGAGAGACTGGACGCTCTAGCTGACGGTTACTCGCTAGCCCCCCCCGATGGCGGACAGTGGGACCGCGGCGTGACGGAGAAGCCGGCGTGGGTTTACATGCCCGACTGTCATGCGGTTGCGGTGGCTCTGAGCCGACAGCACACGGTCACCGAGGTCCTGAACACGGCCTGCAAGGTGCGGAACCTGGACCCCAGCGTACACCGCCTGCGTCTGCGCAGATGCGTCAGTGATCGGATGGAGGTCTGGACTCCAGCACCGCACGAGCTCCTTCAGGACCTGttgTATGATGAGTTGGAGGTCAGTGCTCTCAGTGTCTACACTCTCCACATGACCAAACCCACATGCACTGGGGATTTTGGGTTTGCCGTTACAGGACACGTGGACAGCCTCAGCCACAGCCGCATCGTTGTCACTGAAGTTCTCTCAGACGGAATCGCCTTCAGTGAAGGTCTGAGACCGGGAGATGAGATCCTGGTTCTGAACGGCTGTCAGGTCTCGTCTCTGGACCTGGCTCTCATTCAGACGCTGTTCAGTGAGAACACGctgcacctgaccatcagacgAGAGCCGACtgcctcaacacacacacccctaacacacacagccagcagCCTGCAGCCAGCGAGGGACTCCCTGTACCGCCATCACAGAGCCAAGTCTGCTACagACGTGTCGTGTGTGTCCGAGGCCTCGGGTAAAGCCGATGTAGAGACGAAGCGACATCATCGCCAGAGCCTCAGAGCCGTGCAGCTCAGCAAGagcGTGGAGACGGTGTGCACGCTGTATCACTCCTTCCAGGACGCTTCTGCAGGACTGATGGAGATCCAGAAGGAGACGGCGGGACCGGACGCCACCCTGCTCAGGCCCTGTCCGCGTCACATGTCCGTCACCGAGAGACTGCGGAAAGTCATCCAGGAGTTAGTGGACACTGAGAAATCCTACGTCAAGGATCTGAGCTGCTTGTTTGAGATCTACCTGAAGCCCCTGCAGAAGGAGACGTTTCTCACACTGGATGAGATGGAGAGTTTGTTTGGGAGTCTGCCGGAGATGCTGGACTTCCAGAAGGTGTTTCTACAAACCCTGGAGGAGAGGATCGCCTCGACTCCGGACTTCAGCACACTGGAGACCCCCGTGCAATTCAAGAAGCTGCTGTTTTCTCTCGGTGGATCGTTTCTCTACTACGCCGATCACTTCAAGCTCTACAGCGGCTTCTGCGCCAACCACATCAAGGTCCAGAAGGTTCTGGAAAGAGCTAAAACAGATCGAGCCTTTAAGGAGTTCCTGGACGCGAGGAATCCCACCAAGCAGCACTCGTCTACTCTCGAGTCCTATCTGATTAAACCAGTGCAGAGAGTGCTGAAGTACCCTCTACTGCTGCGAGAGCTGGTGTCTCTGACCGACACGGACAGCGAGGAGCACTATCacctcacagAGGCCTTGAAGGCGATGGAGAAAGTGGCCAGCCATATAAACGAGATGCAGAAGATCTATGAGGACTACGGCGCCGTGTTTGACCAGCTGGTGACGGAACAAAGTGGCTCAGAAAAAGAGgtCACAGAGATTTCCATGGGAGAGTTTCTCATGCATTCCTCAGTGATGTGGCTGAACCCGCTCCCGTCTCTGGGCCGCATGAAGAAGGAGCCGGAATTGACCGTATTTGTGTTTAAGAAAGCAGTGATCCTCGTCTACAGAGAGAGCAACAAGCTTAAGAAGAAAATGaaCGTTCCACGCTCCGCCCACTCTCACGGAGATCAGGACCCCTTCAAGTTCCGCTGGCTCGTTCCTCGCTCCGCGCTGCAGGTCAGACTGGGCAACACGGCAGAAAGCAACTGCGTGTGGGAGCTGATCCACACCAAATCGGAACTGGAGGGCCGACCCGAGACGGTGTTCCAGCTGTGCAGCAGCACGCCTGAGAGCAAAGTGAACATGGTCAAGGTGATTCGCGCTGTTCTGCGAGAAAACGTGCGCAAAGGGATGCGAGCAAACGAGCGGCCAGCTGAGAGAACCTGCAAAGAACTTTTCACTCCACTGAGGGGAAGTTTACCTTCATCAGCTAAACTCGgttCCTCTCGAGCGTCGTGGTTGTGCCAGAAACCCATCAGCATCGACTCTTTTACCAAAAGAGACTCACTGAAGCCCACGCAATTAGACTCCGATTCAGCAAGTGAGAGCAGTGGAGACCCGCCCCCTGCCCCATCATCGGAGGCCCCGCCTACTAACTCCACCCTTAGACGCGGCAGCATGAAGGAGTCGGACATTCTCAGCGATGACGACGGGTTCAGCGAGCGCTTGGCTCGCCGTGACTCCACCCCCGAATCGATCGGGACTCGGTTCCACGAGCTGCGCCTGAGCGACGAGGCCCGCGTGGAACCCGAAGGTCGCGAAGTGAACTCTCCCGAGACGCAGCCTCAGCTGAAACGGGCTCACTTCGGCGCCGTGAGGCGGCGGTCAGCGAGAAGCGAGCCGAGACGCAGCCAGGCGGCGCTGCTGAGTCTGAGGCAGCACAGCCGCTCTCTGGACAGCCAATCGGAGTCCGCGGCGGTCAGCGGTGACCTGAACAGGCTGCTAGAGCGCGACTTCAGCGTCCACAGCCTCACCTCCGTCACTAACGAGGACTGCTTCTATGAAAACGCCACCAAGAGCAGCACCACAGCTACGACATCATAGCGATGAATCCGTACGCTCGAATTTACTTTAACGTTCAGGTCAGTGAATTAACAGCTAGTTTAATGGTTATTTAAAGGTAATTTAAAGATTTAGTCAGCGATTTTGGACGAACTGTAAAGTTGTAACTTCAGTGGCCCCTCGCGAAGCCACACCCCCGCAATCATTTCTGAACAAACAAGAaacatgattgacaggcaaGAAGAGACGCTTACTCGTCTGGGAGGTCcacatcatgtttttgttttcccaAACGAGAGGATACACTTCACCAAAAATCActaactgcacctttaatagcCAGAGGAACACGTGAGTCGTATCGCCGAACCTGTGCTTACCTTCAGGAAACAACGATCCAGATGTTGCATCTGTTTATTTTGTGCCTTGTTTagctgtgcttttatttttatttgtacatgcCTAGGGTCTTTAACGTTTTtaagctttattatttattgaaaacTTTATATTCCTTTTGAACAGGAAGCCAAACCACAGGTTaagacttgattttttttttttttcttgaagtaaAACGTTTGCACGAGTTGTGTGACTCAAACACGTGGATCGTTACGGAACTCGTCTTAGTTAGTAAGGCGTAAggtgtgtgatgtacagaacAGTCGAGCAGTCCACCACAATCAGCGCTGAATGTGCTTCGTGCTACGGCGGGTAACGTAAAAAAAactatctttttttaaacaccaaatatgtatagtattttttatgaatacctgtaatttaatttgtattacGGTTTATCAGTTTGgcattttaacaatttaaaaaagtgtatgtAATAAACTGTGTCGCTGATTTGTACAGTTGTGCTGCGAAGAGGTTTTTAAACGAACgatgaataaaaatgtcttttggtA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204439 lncRNA upstream 156839 27840986 ~ 27842183 (+) True G172741
TU204395 lncRNA upstream 199842 27794382 ~ 27799180 (+) True G172719
TU204396 lncRNA upstream 199842 27794756 ~ 27799180 (+) False G172719
TU204076 lncRNA upstream 346858 27622473 ~ 27652164 (+) True G172422
TU204586 lncRNA downstream 44946 28101507 ~ 28108665 (+) True G172858
TU204550 lncRNA downstream 62501 28119062 ~ 28122832 (+) True G172830
TU204603 lncRNA downstream 92016 28148577 ~ 28191912 (+) True G172873
XR_003403478.2 lncRNA downstream 180112 28236673 ~ 28244726 (+) False LOC113534053
XR_004578977.1 lncRNA downstream 180112 28236673 ~ 28243954 (+) True LOC113534053
XM_026926112.2 mRNA upstream 35902 27931174 ~ 27963120 (+) True scaf8
XM_034307887.1 mRNA upstream 35902 27933938 ~ 27963120 (+) False scaf8
XM_026926664.2 mRNA upstream 71362 27914404 ~ 27927660 (+) True map7a
XM_026926081.2 mRNA upstream 117119 27868240 ~ 27881903 (+) True pnoca
XM_034308269.1 mRNA upstream 205810 27781468 ~ 27793212 (+) True hmbox1a
XM_026926115.2 mRNA downstream 4015 28060576 ~ 28069703 (+) True LOC113533782
XM_026926116.2 mRNA downstream 9958 28066519 ~ 28069703 (+) False LOC113533782
XM_034307898.1 mRNA downstream 66442 28123003 ~ 28127853 (+) True ptp4a2a
XM_026926376.2 mRNA downstream 72158 28128719 ~ 28165654 (+) False ppp1r13ba
XM_026926374.2 mRNA downstream 78736 28135297 ~ 28165654 (+) True ppp1r13ba
trnak-uuu_7 other upstream 273743 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 533373 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other upstream 533373 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other upstream 533373 27156343 ~ 27465649 (+) False nrxn3a
trnat-ugu_12 other upstream 1083592 26915358 ~ 26915430 (+) True trnat-ugu_12
TU205054 other downstream 1013159 29069720 ~ 29073089 (+) True G173221
TU205058 other downstream 1036930 29093491 ~ 29138776 (+) False nrde2

Expression Profile