RNA id: XM_034307899.1


Basic Information

Item Value
RNA id XM_034307899.1
length 3597
RNA type mRNA
GC content 0.44
exon number 25
gene id LOC113534087
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25534732 ~ 25555563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGCATTTTTTCTTGTGCCATGGCCATGTGAGGCACCAATTACGCCGGTGAAATTATTAGCAAGCGTGTTTGCTGCCTCCCCTGTTTATCCGTAGAGCCTTAGTGCCTCTTTGGAGTTCCCCCACACCATCTTGCCACACTGCCCTTCACCATGCTCACTGAATATACTTTggaaaattagatttttttggaCTCAGTTAACAAGGTTCCACCTGTGGATTGTATGGGGGGACTAACAAGCCGGGCAGCGTTAACATCAAGCAGGTGGAACCACTGCAACGGGACAGGACGAGATCAGCTGAAGCTTCCACAGCAAGTCACACTATGACTAATGAAACTGAAGATTCTGGAGCAGAGCCCGTCAGTATGGACGTCCAAAATCAGGAAGCCGTGCACTTGACACCTCCTGAGGTCATAAACCACGGCTTCATGAGGGTCTTAAAGCGTCCTGCACAGTGGCtgatcatcatttctcttctaatCTCCTGGTCAGCAGCTGGAATTTTTATGTTTGACTTTGTGAGTGACGAGCAGCTGACAAATTTACAACACATAAGTTCAGATCCCATGACAGTGGTGAATGAAGCTGTTGAGGGATTTACAGACAAAATGAGCCacttaaatgacatttttaataatgcacATGAGTACGTTCCTACTGTAATCACTGATCCAATGGCTGCCGTTAACCAGTGGGCAGATGCCTCGACGTCGTTTCTGATAGGAATACATGAAAGTGAAGGAGTCACTTATTTCCTTAAACCTGGCCGTGATGTATTAGATGAAATGAATGATTGGGTTAGGAGCCTGGCGGGATATTTATTCCACATGTTCGAAGATCTGTTGGATGCAGTAATTGTTAATCCTCTGGAAAAGGTCGCTGAAGCAGCTGCAAATATTTCAGACACAGTCATGGTCACCTTGAGCTCTTTCACAGGAATGTTCAAGGGCGTTGAAGTTTGGATTCCTAAAACAAGCACAAGTCCCATGGAATTGGCCAGCGATGTTCTCGAAGGAGCACAAAACCTCAAAAACAACATCGTCACACACGTGTCCAACCTGTTCTCTGGGGACGAGGGTGGTGTTTCTGACATTAACTTTGATCCCATGAAAGTTGTCACAGACACAGTTGAGGAATTCTCTGACAGAAGGGACATGTTTTTAGCATATCTCTCTAATATCTTAATGGAGGATAAAGATGACACGCCACATGTGATCAGGAGAAAAGGAGAATTTCTGCCACCTAAGGAAAAAGTTCTGGAGCAAGAAAGAATTGCCAAGGAGAAAAGAGCTCGGGAAGAAGTCTACAAAGCCATTCAAGAAATGCGAGCCGAAAAGGCTgcagaagaaacagagaaaaaaattgagaaggataaagaaaaagagaagaagaaagaagagttAAGGAAGGAAATGGTGAAACTAAAAGAAAAGCCTAAAGAGGACATAAGCAAGATTGCAGAAACTAAAGAGCATGAAGATTTGGATAAGATGGTTAATGTTACAATTAAAGCTGTAATGATCACCACAGAGAAAGCTCCCCCACTCGTTATAAAGAAAgAGGTCAAAGCTAAAGAAGAGAAAGCTAAGCCAACTCATATTAAGAAAGAGCCTGAGGTTAAGAAGGAGAAGATCAAAGCTGCTCCTCTAAAGAGAGaagcTAAAGATGTTAAGGAGAAGATAAAACCAGCTCGTGAAAGGAAAGCAGAAGCTGAAAAGGTGAAAGCACAGCCAGCTTTGCAGAAGAAAGAGGCTGAAgttaaggaaaaggaaaaaccaacagcTGTAAAGAAAGAGGACAAAGGTGCCAAAGAAAAGCTGAAACCAGCTCCACCAAAGAAAGAGGCTGaggcaatcaaagcaaagcccAAAGCAGCCCCTGTGACGAAAGAGCCTGAAATTTCCAAAGAAAAGGTCCAAAGAGCACCAGCAAAGAAAGAAGGTGAAGCTGCTCCAAAAGAAAAGGCCAAACCAGAACCTGCACTAAAAGAGAAGGCAAAGCTCAAACCTGCTCCAAAAGATAAGGCAAAACCAGTACCTCCTCGAGAAGAAAAGGCAAAACCTGAACCTCTTCCAAAAGAGACAGTAAAACCAGAACCTTCTCCAAAAAGAGAGGCAAAACCTGAACCTGCTCCAAAAGTGAAGGCAAAACCTGAAGCTGTTCCGGAAGAGAAGGCCAAACCTGAACGTTCTCCAAAAGAGAAGGTAATGACTGAACCTGCTccaaaagagaaagcaaaaccAGAACCAGCTCCAAAACAGAAGGTAACATCTGAACCTGCTCCAAAAGAGAAGGCAAAACCAGAACCTGCTCCAAAAGAGAAGGCAAAACCTGAACCTGCTCCAAAAGAGAAGCTACAAACAGAACCTACTCCAAAAGAAGTGGCAAAACCTGAACCTGCTCCAAAAGAAGTGGCAAAACCTGAACCTGCTGTAAAAGAAAAGGTAAAGCCTGAACCTATTCCAAAAGAGAAGGCCAAACCTGAACTTGCTCCAAAAGTGAAGGCAAAACCTGAACCTGCTCCAAAAGAGAAGCTACAAACAGAACCTATTCCAAAAGAAGTGGCAAAACCAGAACCTGCTCCAAAAGAGAAGGCAAAACCTGAACCTGCTCCAACAGAGAAGGCCAAACCTGAACCTGCGCGAAAGGAGAAGGTAATGGCTGAACCTGCTCCAAAAGATAAGGCAAAACCTGAACCTGTTctaaaagagaaagtaaaaccTGAACCTGCTCCAAAGGAGAAGGTAACACCAGAACCAGCCCCAAAAGAAAAAGCCAAAGCTGAAACTGTTTCAAAAGATAAGGCAAAACCTGAACCTGCTGCAAAAGAGAAGGCAAAACCTGAAGCTGTTCCAAAAGAGAAGGCAAAACCTGAAGCTGTTCCAAAAGAGAAGGTAAAACCAGAACTTTCTCCAAAAGAGAAGGCAAAAACTGAACCTGCTCCAAAAGAGAAGGTAATGCCTGAACCTGCTCCAAAAGAGAAGGCAAAACCTGAAGCTTTTCCGAAAGAGAGGGCCAAACCTGAACCTTCTCCAAAAGAGAAGGTAATGCCTGAACCTGCTccaaaagagaaagcaaaaccAGAACTTGCTCCAAAAGAGAAGGCCAAACCTGAACCTTCTCCAAAAGAGAAAGCAGAACCAGAACCTGCTCGAAAAGAGAAGGTAAAATCTGAACCTGCTCCAAAAGAAAAGGTAAAACCAGAATTTCTTCCAAAAGAGAAGGCAAAACCTGAACTTGCTCCAAAAGAAGAAGCAAAACCCAAACCCACTCCAAAAGAAAAGGTTAAATCTGACTCTGTTCTAAAAGAGAGGATAAAGCCTGAATCTGTTCCAAAAGAGAAGGCAAAACCTGAACCTGTTCCAGAAGACAAGGTAAAGCCTGAAACTGTTCCAAAAGAGAAGGTCAAAGCAGAACTTCCTCCAAAAGAGAAGGCAAAACCTGAACCTGCTCCAAAAGAGAAGGCCAAACCTGAACCTTCTCCAAAAGAGAAGGTAATGCCTGAACCTGCTCctaaaagagaaagcaaaaccAGAACCTGCTCCAAAAGAGAAAGTAACATCTGAACCTGCTCCAAAAGAGAAGGCAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203274 lncRNA downstream 25112 25504388 ~ 25509620 (-) True G171726
TU203256 lncRNA downstream 64658 25469504 ~ 25470074 (-) True G171710
TU203103 lncRNA downstream 144861 25389583 ~ 25389871 (-) True G171594
TU203079 lncRNA downstream 242794 25291426 ~ 25291938 (-) True G171573
TU203076 lncRNA downstream 245230 25287152 ~ 25289502 (-) True G171570
TU203311 lncRNA upstream 217941 25773504 ~ 25778966 (-) True G171755
TU203430 lncRNA upstream 422233 25977796 ~ 25978027 (-) True G171864
TU203440 lncRNA upstream 502682 26058245 ~ 26058509 (-) True G171874
TU203600 lncRNA upstream 1039718 26595281 ~ 26595483 (-) True G172016
TU203802 lncRNA upstream 1216569 26772132 ~ 26773050 (-) True G172196
XM_034308045.1 mRNA downstream 72 25533476 ~ 25534660 (-) True LOC117598273
XM_034308044.1 mRNA downstream 1256 25521364 ~ 25533476 (-) True LOC117598272
XM_034307815.1 mRNA downstream 66163 25431323 ~ 25468569 (-) True zgc:85722
XM_026926044.2 mRNA downstream 66163 25431325 ~ 25468569 (-) False zgc:85722
XM_026926794.2 mRNA downstream 116269 25398090 ~ 25418463 (-) True ros1
XM_026926010.2 mRNA upstream 1846 25557409 ~ 25574121 (-) True fyna
XM_026926529.2 mRNA upstream 31925 25587488 ~ 25592743 (-) True col10a1a
XM_026926867.2 mRNA upstream 64453 25620016 ~ 25633883 (-) True si:ch211-266g18.9
XM_026926059.2 mRNA upstream 79164 25634727 ~ 25640221 (-) True fhl5
XM_026926505.2 mRNA upstream 96245 25651808 ~ 25660655 (-) True fut9a
TU203074 other downstream 275370 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 275523 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 727637 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2670965 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 3418856 22115565 ~ 22115876 (-) True G170023
TU203284 other upstream 23376 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2343928 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2343928 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 2356674 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 3281329 28836892 ~ 29050026 (-) True G173287

Expression Profile