RNA id: XM_034307943.1


Basic Information

Item Value
RNA id XM_034307943.1
length 1535
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC117598249
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21289832 ~ 21296023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTAGTTCCCAGCACAAATTCTGACCAGACATCCATGcttgaaaatgaagaaaataccTCAGGAAACATAAATCTATCCCACAAATCCTCCTCTCTTGACACCCCCAGAGAAGTAAGGTTGTCAAGTCCAAATGAAGTGAGTGATGAACGTCCTAAATCTATATTTCTTGAATCGAATGAAGAGACTGAGGAATCTCCTACATACATACTTATTGAATcaaatggagagacagaggaacTGCCTAAATCCATACTTCTTGAATCAAATGAAGAGATTGAAGAATCTCCTACATCCATTCTTCTTAACCCTCCTGTAGCAAGTCCAAGAAAACTCGCAGCAATCAATACTGCTTCACCAGTGAGTGACCTTCCTCCATCTTTCTCCACCTTGCAACCACCTTCACCTCCACAGTCTCatccaccatcaccacccacacTGAGGATATCCACTGAGGAAGCTAAGGATTTAACTGAGGAACCACCCTCTCCAGCTTACAAGGTCAGAGAAGGCCTGATCAAGATGGAGGGACCACTGGATATTAAACTGAAACAAGGAGGATTTAAAGGTATGGATCATTGGGAAACCGTCTATGCACTACTGGAAGAAGAGACACTGAATTTGTTTAACGACCAAAATGCTGCTGGAGAGAACTGCACCCGATGGCCACCTATCACTATGGCTGGAGCAATTTGTAAAGATAACCCCTACTACAGGAGAAAGAACTACACCTTCAAACTGATACTGAATGATGGCAGTCACTACCTGTTTGCTGCGCCCTCTCAAGAGGAACAGCAGAAGTGGGTGGAGGAGCTGCAGAATTGCACCGGTCAGAGAGGCTTCTCAGAGAATATTGGGATGAACACAGAAGAAATGGTGGAGACGGCAAAGCAGCAGCTCTCAAAATTACTGGATGAATCGCATACACAAGTCTCCACCATTGAGCTGGAAAAAACTTCCACAGAGAGTTTTGAGAAGGAGAAGGAACCACCTCCCAAGCCCCCCCACACATACTACAACAAACACCGCTACCCAGATGGAGGAGAGGCCAAGGACTCAGtgactTTGAGAGGTCTGAGGAAGAACCAACCCCCCTCCTTCCCTCCACCTCTTCCCCCACAAAACCAGCAGGAGAGCGGAGGCAAAGAAAAGTCTAAGAACAAGAATGtcttcaaaaaaatatttaaaatataatttatactgCTTGGTAAAAATTTTCTTTGCCCATTAAAATCCTCTGTACCCACTGACTCAGGGTAGAGATGTTTCAGTGATTGCTAGGTGTAATAACAGGATATCTAATGCGAACAGAATAATAGCTATAAAGAATCACACTAGActgaattatttacatttgttttaacTGTCATTTTGTTTCTATATACATTCTGCACTTTGATTGTTCTCGTTCACTTCTATGTACTGACTCATATTTTTCGTACATTACACTACTTAGTGTACAATGAAATGAGTGCTGTGTATCAACTTTATTTCTCCccattaaatgttaatgaaagaaTAAACCTACGGAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200432 lncRNA upstream 93540 21191166 ~ 21196292 (+) True G169320
TU200384 lncRNA upstream 106054 21181857 ~ 21183778 (+) True G169287
XR_004579003.1 lncRNA upstream 182433 21104943 ~ 21107399 (+) True LOC117598333
TU200106 lncRNA upstream 447658 20832846 ~ 20842174 (+) False G169046
TU200673 lncRNA downstream 243227 21539250 ~ 21539498 (+) True G169543
TU200723 lncRNA downstream 355618 21651641 ~ 21651902 (+) True G169575
TU200820 lncRNA downstream 464770 21760793 ~ 21761231 (+) False im:7136021
TU200832 lncRNA downstream 472141 21768164 ~ 21768718 (+) True G169652
XR_004578967.1 lncRNA downstream 545593 21841616 ~ 21843598 (+) True LOC117598284
XM_034307941.1 mRNA upstream 24 21250285 ~ 21289808 (+) True sptbn5
XM_034307942.1 mRNA upstream 6886 21250285 ~ 21282946 (+) False sptbn5
XM_026918801.2 mRNA upstream 42977 21230925 ~ 21246855 (+) True ehd4
XM_026918799.2 mRNA upstream 66199 21208322 ~ 21223633 (+) True traf3
XM_026919366.2 mRNA upstream 84671 21193976 ~ 21205161 (+) False rcor1
XM_026919771.2 mRNA downstream 5888 21301911 ~ 21320414 (+) True foxg1a
XM_026919198.2 mRNA downstream 203710 21499733 ~ 21510083 (+) True g2e3
XM_034307951.1 mRNA downstream 219048 21515071 ~ 21538950 (+) False scfd1
XM_034307950.1 mRNA downstream 221500 21517523 ~ 21539136 (+) True scfd1
XM_026919468.2 mRNA downstream 254370 21550393 ~ 21556431 (+) True coch
XR_004578912.1 other upstream 758610 20528519 ~ 20531222 (+) False LOC113530103
XR_004578913.1 other upstream 758610 20528525 ~ 20531222 (+) False LOC113530103
XR_004578914.1 other upstream 758610 20528527 ~ 20531222 (+) False LOC113530103
XR_004578905.1 other upstream 761881 20521595 ~ 20527951 (+) False LOC113530103
TU200725 other downstream 373884 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 523258 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 1565784 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 1565787 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 1566004 22862027 ~ 22890770 (+) True LOC113533992

Expression Profile