RNA id: XM_034307951.1


Basic Information

Item Value
RNA id XM_034307951.1
length 2002
RNA type mRNA
GC content 0.46
exon number 25
gene id scfd1
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 21515071 ~ 21539136 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAACCTTGTTTGAATATTAGCCGCTCGGCCGTTAGATGCCGCTGTGCTCGCGTGCCTAGCTGCCACGTCACCCGCCACCCTGTCAGTGCATAAATAGTAAAGATGGCGGCCTCCATCCGGGAAAAACAGACAGCTGCCTTGAAGCGAATGCTAAACTTTAATGCACCACCTCTAAAAAACACAGCAGTTGAACCAGTATGGAAGGTACTTATTTATGATCGCTTTGGTCAAGACATcatctctccccttctctctgtGAAAGAGTTAAGAGACATGGGAATCACTCTCCACCTATTATTACACTCAGACAGAGATCCTATTCCAGATGTTCCTGCCATTTACTTTGTGATGCCCACAGAGGAGAACATAGACAGGATATGTCAAGACCTGCGGAACCAACTCTATGAGTCGTACTACCTGAACTTTATCTCTGCGATTTCCAGAAGCAAACTAGAAGACATAGCAAGTGCAGCTCTTGCAGCAAATGCTGTGAATCAGGTGACCAAAgTGTTCGATCAGTATTTGAACTTCATAACACTAGAAGATGACATGTTTGTCCTCTGCAATCAGAATAAAGAACAGATCTCCTATCACGCAATCAACAAACCGGATATTATGGACACTGATATGGAGGCTATAATGGACACCATTGTTGACAGTCTCTTCTGCTTCTTTGTCACTCTTGGTGCTGTTCCAATAATCAGATGTCCAAGAGGAAACGCAGCTGAAATGGTAGCTGTGAAACTTGACAAGAAACTGAGAGAGAATTTGCGAGATGCTCGTAACAGCCTGTTTACTGGTGACACCATGGGCACAGGCCAGTTTAGTTTCCAGAGGCCGTTATTTGTTCTTGCCGACCGCAACCTGGATCTTGCcaccccactccatcatacaTGGACCTACCAAGCTCTCATTCATGACGTCTTGGACTTCCATCTGAACAGGGTCAGTCTGGAGGAATCTACAGGATCAGAAGTTAGCCCAGCAGGGGCACGGcccaaaaaaaagaacaaaaagagcTATGATCTCACTGCTGCAGACAAGTTTTGGCAGAAGCACAAAGGAAGCCCATTCCCTGAGGTCGCAGAATCAGTGCAGGAGGAGTTGGATACGTACAGAGCCCAGGAGGATGAGGTTAAGCGTCTAAAGAGCATCATGGGCTTAGAAGGGGAAGATGAGGGAGCCATTAGCATGTTGTCAGACAACACTGCCAAACTTACATCAGCCGTCAGTTCTCTTCCTGAACttttagagaaaaagagactgaTTGACCTCCACACCAATGTTGCTACAGCAGTTTTGGACCACATTAAGTCTCGCAAGCTGGATGTATACTTTGAGTATGAGGAGAAGCTAATGAGCAAGTCCACACTGGATAAATCCCTGCTGGACATTATCAGTGACCCTGATGCTGGAACACCAGAGGATAAGATGAGACTTTTCCTGATCTACTATATCACCTCCCAGCAGCCTCCATCTGAGGGTGATCTTGAGCAATATAAAAGGGCTTTGACTGATGCTGGCTGTGACCTCTCCCCCTTGAACTACATAAAGCAGTGGAAAGCTTTCACAAAGATGGCTACTGCACCAGCCAGTTATGGTAACAGTGGAGTGAAACCAATGGGCCTTTTCTCCAGAGTCATGAACACTGGCTCACAATTCGTTATGGAAGGTGTGAAAAATTTGGTCTTGAAACAGCATaaTTTGCCAGTTACTCGAATCTTGGACAACCTGATGGACATGAAGTCAAATCCGGAAACAGATGACTACAGATACTTTGACCCAAAAATGCTGCGCGGCAGTGAAAGttCCATTCCAAGGAACAAGAACCCATTTCAAGAGGCCATTGTTTTTGTCGTTGGTGGGGGTAACTACATAGAATATCAAAATCTCGTCGACTACACAAGGGCCAAGCAGGGGAAAAAGGTGATGTATGGCTGCAGTGAGCTGTTCAGTGCAGCACAATTCCTGAAACAGCTCTCTCAACTGGGGCAGAAGTAG

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0031101 fin regeneration biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200432 lncRNA upstream 318779 21191166 ~ 21196292 (+) True G169320
TU200384 lncRNA upstream 331293 21181857 ~ 21183778 (+) True G169287
XR_004579003.1 lncRNA upstream 407672 21104943 ~ 21107399 (+) True LOC117598333
TU200106 lncRNA upstream 672897 20832846 ~ 20842174 (+) False G169046
TU200673 lncRNA downstream 300 21539250 ~ 21539498 (+) True G169543
TU200723 lncRNA downstream 112691 21651641 ~ 21651902 (+) True G169575
TU200820 lncRNA downstream 221843 21760793 ~ 21761231 (+) False im:7136021
TU200832 lncRNA downstream 229214 21768164 ~ 21768718 (+) True G169652
XR_004578967.1 lncRNA downstream 302666 21841616 ~ 21843598 (+) True LOC117598284
XM_026919198.2 mRNA upstream 4988 21499733 ~ 21510083 (+) True g2e3
XM_026919771.2 mRNA upstream 194657 21301911 ~ 21320414 (+) True foxg1a
XM_034307943.1 mRNA upstream 219048 21289832 ~ 21296023 (+) True LOC117598249
XM_034307941.1 mRNA upstream 225263 21250285 ~ 21289808 (+) True sptbn5
XM_034307942.1 mRNA upstream 232125 21250285 ~ 21282946 (+) False sptbn5
XM_026919468.2 mRNA downstream 11443 21550393 ~ 21556431 (+) True coch
XM_026919473.2 mRNA downstream 51458 21590408 ~ 21598665 (+) False ap4s1
XM_026919469.2 mRNA downstream 51459 21590409 ~ 21598665 (+) True ap4s1
XM_026919472.2 mRNA downstream 51459 21590409 ~ 21598665 (+) False ap4s1
XM_026919470.2 mRNA downstream 52568 21591518 ~ 21598665 (+) False ap4s1
XR_004578912.1 other upstream 983849 20528519 ~ 20531222 (+) False LOC113530103
XR_004578913.1 other upstream 983849 20528525 ~ 20531222 (+) False LOC113530103
XR_004578914.1 other upstream 983849 20528527 ~ 20531222 (+) False LOC113530103
XR_004578905.1 other upstream 987120 20521595 ~ 20527951 (+) False LOC113530103
TU200725 other downstream 130957 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 280331 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 1322857 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 1322860 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 1323077 22862027 ~ 22890770 (+) True LOC113533992

Expression Profile