RNA id: XM_034307959.1


Basic Information

Item Value
RNA id XM_034307959.1
length 1455
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC113533857
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28108094 ~ 28115465 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGACACCAACATCAGTATTAAATATCCTTATGAAGAATGCAAATGAATTCAAATTTAGAAAATAGatggttgtgtgtttttgcGGTCCACAGAGTCAGCTGGGAAAAACTCAGATGGAGGTGCAGGAGATGATCCAGGAGCGAATGAAGAAGATCCAGGAGATTAATCACTCAGTAGAGCTCAGCAAAagaaacacagagaaagagaaatcgGACAGTGTTGAAGTCTTCACCGCTCTGATTCGCTCCATTGAGAGGAGTCAGGCTGAGCTGCTGAAGGTGAtggaggagaagcagaaagCAGCAGAGAAGCAGGCTGAAGGACTCATTAAAGAGCTGGAACAGGAAATCGATGATCTAAAGAGGAGAGacactgagctggagcagctctcacacactgacGATCATCTCCACCTCCTACAGATTTATCCGTCACTGTGCAGCGCTCCACACACCAAGAACTGGACTCAGATCAGGATTAACACTGAACCGAACATGACACTGAAGACAACTCTGTCTCAGCTTCAGAAAACTCTGAATAAGAAACTCAGTAGAATGCTGAAGGAAATGGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCTCTCTCATCCTGTCTGATGATGGAAAACAAGTCACGTATGAAGACACATGGCAGAATCTCCCAGACACCCCAAAAAGATTCACTTATTATGCAATGGTCGTGGGAAAGCAGGGTTTCTCCTCAGGGAGGTTTTACTATGAGGTGCAGGTCAGCAGGAAGACGGAGTGGGATTTAGGAGTGGTCAGAGAATCTGTTAACAGAAAGGGGAAGATTGAGGCATATGACCCTCAGGATGGGTTCTGGACTGTAACTCTGAGGAATGGGAATCAGTATAAGGCTTGTGATGATTCCTGTATCTCCCTCTCCCTGAGAGAGAAACCCCAGAAGGTGGGAGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTTGAAGCCAGGTCTCATATCTACTCTTTCACTGGTCAGTCTTTCACTGAGAAACTCTATCCATATTTAAGTCCTTCTAATAATGATGGAGGTAAAAACTCAGCACCACTGATCATCTCTCTAATCTAAGTCCAGAGTGAaagatattgttttaaaaatcctttttcTCATGTTTGTCTTGGAAAACACATATCGCTACATGAGTAATgatcataaatgttaatatctTTTAGGGTTATGTGGAGAATATTGTGCATGTCtattaaaaagggaaaaatgtgtataaaaaacCAAGAGTTTACCTTTTCGGTAGAGAATTAATTTCATATATAAGAATTATTTTCGCTTTTCTCACTACGAAGAAGTAAATTTGAACTTGAAGTATGTATCCCAACATTATCCTCCAGGGAGAatatactgtctgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204715 lncRNA downstream 44491 28019228 ~ 28063603 (-) True G172965
TU204645 lncRNA downstream 63846 27960969 ~ 28044248 (-) True G172903
TU204668 lncRNA downstream 171266 27933981 ~ 27936828 (-) True G172925
TU204486 lncRNA downstream 273254 27833532 ~ 27834840 (-) True G172784
TU204484 lncRNA downstream 320366 27787322 ~ 27787728 (-) True G172782
TU204760 lncRNA upstream 14708 28130173 ~ 28135542 (-) True G172996
TU204777 lncRNA upstream 39834 28155299 ~ 28158417 (-) True G173012
TU204790 lncRNA upstream 54809 28170274 ~ 28170878 (-) True G173020
TU204797 lncRNA upstream 65732 28181197 ~ 28223887 (-) True G173025
TU204844 lncRNA upstream 228974 28344439 ~ 28344767 (-) True G173067
XM_034307957.1 mRNA downstream 1890 28095797 ~ 28106204 (-) False LOC113533853
XM_034307958.1 mRNA downstream 2327 28101881 ~ 28105767 (-) True LOC117598250
XM_026926266.2 mRNA downstream 7211 28095797 ~ 28100883 (-) True LOC113533853
XM_026926114.2 mRNA downstream 20687 28057562 ~ 28087407 (-) False tfb1m
XM_034307888.1 mRNA downstream 20687 28057562 ~ 28087407 (-) True tfb1m
XM_026926057.2 mRNA upstream 96155 28211620 ~ 28215567 (-) True LOC113533755
XM_026926638.2 mRNA upstream 110184 28225649 ~ 28239592 (-) True ccdc175
XM_034308144.1 mRNA upstream 110184 28225649 ~ 28239552 (-) False ccdc175
XM_026926032.2 mRNA upstream 366035 28481500 ~ 28523596 (-) True lrfn5a
XM_026926578.2 mRNA upstream 565234 28680699 ~ 28686251 (-) True pnn
TU204662 other downstream 195550 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 197204 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 197204 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 2525567 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 2848732 25258839 ~ 25259362 (-) True G171569
TU205159 other upstream 721427 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 785439 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 785439 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 785439 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other upstream 785439 28900904 ~ 28908552 (-) True stmn4l

Expression Profile