RNA id: XM_034307984.1


Basic Information

Item Value
RNA id XM_034307984.1
length 6451
RNA type mRNA
GC content 0.53
exon number 29
gene id nid2a
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25056364 ~ 25106759 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCAATCTGGCAACTCTGGGGGGAGCTTCACCCCAGCCCAAATTCCTCTGGACTGTGAGAGCAGCATCACAGAGCTGACTggccagacagagagaagagctCAATGTATAGCTGATGAAGTTGAGAAGGTTGTGATCATGTGGAAGAAAGCAGTGGCGTTTTTGCTCCAACTTTCCTACATCTCCCATCATGTGAGTGCTCTTCAGAGAGGAGAGCTTTTCCCCTATGGGCCATTGAGCGGGGATTTGACTCTGCAGGAAGGAGACGATGAAACATCTAAAGTGATTGCGTTGAGCAAACCCATGCACTTCTACGACACCTCCTTCAGCAAATTATATGTGGCCACCAATGGCATCATCTCACCTCATGACCTTCCTATGGAGAAGCAGTACGTTGATGATGGATTCCCCACCGAGTTCCCAGTTATCGCACCCTTCCTCGCTGACATAGACACCAGTAATGGAAAAGGAGCCATCTACTATCGGCAAACTGAGTCCCCTAGTGTCCTGAATCGAATAGCTGCTGAGGTCCAGAAAGGGTTCCCAGACACTCAGTTTACACCAACTCACGCCATCATCGCCACGTGGGAAAACGTAGCTGCTTACAAAGAGATCACACGCACCGAATCATCCAGACAGGTTAACACATTCCAAGCGGTGGTGGCTTACGATGAGGAGAACACCTACGCTCTTTTTCTTTACCCAGAGGATGGACTGCAGTTCTTTGGAACGCGTCCTAAAGAGATGTTCAATGTGGAGATCGAGCTGCCCGCGCGGGTCGGCTTCACCAGGGGAGAAATCCCATATTTTATCTTCACACGCACTGAGGGACCTTACTTCAGCCTCACCAGCAATGAGCAGTCTGTCAAGAACTTGTACCAGATGGGTAACACTGGCGTGCCTGGCGTTTGGCTCTTCCACATCGGAAACGCATATTCATTCCGCAACGTAATTCCAGCAGCAGCTTCGGGCCCTTTACCCACCGCAGTCCCTAGGAAGCAAGTGGTTGTGTTCCAAACCACCCCCGAGTACCCTGCAGGAGAGTATGAGACTGATGACGAGTCTTTCGACGAAGAGCAAGAATACAACATTGATCCAGATTTTCAGACTCCAGATGTCACAGAATTCCCTCAGCCAGACCACGATGCCTCTCTGTTGAGTGGTCTGAACCAGGAAGCTGACTCAAATCTGTCCCCACTTGACCCCTACAAAGGGGATGTCACACTGAGCCCTGACCCTCAGACTGACCACATTGTTCCTACAAATGTTCCTCCAGAGGAAATCGTTGAGTCCGTGCATCCGGTGCCAGAGCACACTCTTCTGGAAGCGTATCCCATCCGCCCTGAGGTGGTTAACGTGGAAGAAGATTTGGATTTCGACTCTGGAGtgATTCACTATTCCACTGAAAACAAGGAGACGTGTGATCGTTTCCAGCAGACCTGCAGCCAGAATGCTTACTGCGCCGACTACTCATCAGGCTACTGCTGCCACTGCCATGCCGGTTTCTATGGAAATGGACGCCATTGCCTTCCTGATGgtgcTCCTCAACGTGTGAATGGAAAAGTCAATGGGATGGTTTCTGTAGGTTCGACCCCAGTGGGACTGGATAGCATCGACCTCCATGCTTACATCGTAGTGGGTGATGGTCGCGCATACACAGCCATCAGTGAAGTCCCAGAGCCTTTGGGGTGGGCACTAATGCCTGTCACACCCATTGGTGGCCTTTTTGGGTGGCTCTTTGCCCTCAAGCTTCCCAACAGCCATAATGGCTTCAACATCACTGGCGCTGAGTTTACTCGCCATGCCGATGTGACCTTTTACCCCGGCAACCAACGACTCATCATCGTTCAGACCGCCAGGGGGTTGGACAGCCAGAACTACCTGAGCGTAGAAACTCATCTGGAGGGCAGTGTGCCGTTTGTTCCCCCTGGTGCCAGCATTCAGATGGAGCCTTTTGCAGAGACCTACCAGTATTACCCATCACTGATCACATCCAGCTCAGTACGGGAGTTTACGATCATGTCCGCGCAGAGTGGAGCAGAAAAATTCACCTACCAGCTGAGACAGAACATCACCTACAGGGactgcagacacacaccacacgctGGAGCTGAGACGCTGCAGCTCAATGTTGAGCGCATCTTTGCCATGTATGTCAAAGAAGAGCGCGTTCTCAGATACGCCATCACCAACAAGATCGGCCATGTCGGAGATTACATCCCGGACCCTGTGCAGTTGAACCCCTGCTACTTAGGAAGTCATGATTGTGACACCACAGCACAATGTGTACCAGGAGAAGGACAGCactttacctgtgtgtgtgctactgGATACACTGGAGATGGACGCAACTGCTATGaTGTGGACGAGTGCGCTGAAGGTCTGAGCTCCTGTGGGAGTCACGCTCAGTGTGTGAATTTGCCTGGAAGTCACAGCTGCCAGTGCCAGAGCGGCTTTGAGTATGCACATGACAGTCGCACCTGTATAGATGTTGATGAGTGCCGAAGACATCCATGCCACCCTCATGCTTCCTGCACCAACACCTTGGGCTCCTTCCACTGCCGATGCCAGCCTGGATTCCACGGCGATGGCTTCCAGTGTCACCGTCAACATGTTGGGGAAGAGCGTCCCAAAACTCCATGTGAGCATCACAGAGACAGCGCACAGAGTGGAGTAGACGGTTTACCTGTGCTGGGAGCATTTGTCCCTCAGTGTGATGAGGAGGGTCACTACAGGTCTCAACAGTGCCATGGCTCTACAGGATACTGCTGGTGTGTGGACAGTAGGGGGCAGGAGAGAGTGGGAACCCGCACCCCACCTGGTACCCCACCTGCCAACTGTGACGCTCCAGAACGTCCTAAGACTGAGTGTGAACAGCATAGAGACAGGGTGCAGGATGGAGCAGTGCTGGGAGCCTTCATGCCTGAGTGTGATGAGGAGGGTCAATACAGGTCTCAGCAGTGCCATGGCTCTACAGGACACTGCTGGTGTGTGGACAGTAGGGGGCAGGAGAGAGCAGGCACCCGTACGCCACCTGGTACCCCACCTACCAACTGTGACGCTCCAGAGCGTCCTAAGTCTCAGTGTGAGCAGCATAGACATAGCGCACAGGGTGGAGCGGATGGTGTGCCTCTGGTGGGAGCCTTCATCCCTCAGTGTGACGAGGAGGGTCGCTACAGACCTCAACAGTGCCATGGCTCTACAGGACACTGCTGGTGTGTGGACAGTAGTGGGCAGGAAAGAGCAGGCACCCGTACCCCACCTGGTACCCCACCTACTAACTGTGATGCTCCAGAACGTCCTAAGACTCGGTGTGAGCAGCACAGGGACAGCATACAGAGAAGAACGGACGGTTTGCCCATAGTAGGAGCCTTCATCCCTGAGTGTGACGAGGAGGGTCACTACAGACCTCAACAGTGCCATGGCTCTACAGGACACTGCTGGTGTGTGGACAGTAGTGGGCAAGAAAGAGCAGGCACCCGTACCCCACCTGGTACCCCACCTACTAACTGTGATGCTCCAGAACGTCCTAAGACTCGGTGTGAGCAGCACAGGGACAGCATACAGAAAACAGTGGACGGTTTGCCCATAGTAGGAGCCTTCATCCCTCAGTGTGATGAGGAGGGTCACTACAGACCTCAACAGTGCCATGGCTCTACAGGACACTGCTGGTGTGTGGACAGTAGTGGGCAGGAAAGAGCAGGCACCCGTACCCCACCTGGTACCCCACCTACCAACTGTGACGCTCCAGAACGTCCTAAGACTCGGTGTGAGCAGCACAGGGACAGCATACAGAAAACAGTGGACGGATTGCCCATAGTAGGAGCCTTCATCCCTGACTGTGATGAGGAGGGTCACTACAGACCTCAACAGTGCCATGGCTCTACAGGACACTGCTGGTGTGTGGACAGTAGTGGGCAGGAAAGAGCAGGCACCCGCACCCCACCTGGTACCCCACCTACCAACTGTGACGCTCCAGAACGTCCTAAGACTCGGTGTGAGCAGCACAGGGACAGCATACAGAGAAGAGTGGATGGTTTGCCCATAGTAGGAGCCTTCATCCCTCAGTGTGACGAGGAGGGTCACTACAGAACTCAACAGTGCCATGGCTCTACAGGACACTGCTGGTGTGTGGACAGTAATGGGCAGGAGAGAGCAGGCACCCGCACTCCACCTGGTACCCCACCTACCAACTGTGACGCTCCAGAACGTCCTAAGACTCAGTGTGAGCAGCACAGGGACAGCATACAGAAAAGAGTGGACGGTTTGCCCATAGTAGGAGCCTTCATCCCTCAGTGTGACGAAGAGGGTCGCTACAGAACTCAACAGTGCCATGGCTCTACAGGACATTGCTGGTGTGTGGACAGTAGTGGGCGGGAAAGAGCAGGCACCCGCACTCCACCTGGTACCCCACCTACCAACTGTGACGCTCCAGAACGTCCTAAGACTCAGTGTgagcagcacagagacagcatgcATGGCAGAGGGGATGGTTTACCTGTGCTGGGAGCCTTCATTCCTCAGTGTGATGAGGAGGGACGTTATAAGTCATTACAGTGCCATGGGTCTACAGGACACTGCTGGTGTGTGGACAGTAGGGGGCAGGAGAGAGCAGGCACCCGTACCCCACCTGGTACCCCACCTACCAACTGTGATGCTCCAGAACGTCCCAAGACTCCCTGcgaacagcacagagacagagcaCAGAGCCGAGTAGATGCATCACCTGTGGCGGGAGCCTTCATTCCTCAGTGTGATGAGGAGGGTCAATACAGGTCTCTACAGTGCCATGGGTCTACAGGACACTGCTGGTGTGTGGACAGTAGGGGGCAGGAGAGAGCGGGCACCCGTACCCCACCTGGTACCCCACCTAGAAACTGTGACATTCCAGTGGTGGCAGTCCCTACGCAGCATCCGCAGACGGTGTGTGAGCGCTGGCGTGCAAGTCTGATGGAGCACTATGGAGGTCGTCCAGGTCCACAGCATTTTCTTCCCCAGTGTGACACATCAGGCGAGTTCACCCCAGTGCAGTGTTATGGCGATACCAGTTACTGCTGGTGTGTAGACAAAGATGGCCGAGAAGTTCCCGGGACCCGCTCACACGACAAAGTCAAACCTGCCTGTATACCAACTGTTCCCCCGCCCACCATGCATCCACTGCCCCGCCCAGATGTGACTCCTCCCCCATCAGGCACTACTTTGCTCTACGCTCAAGGCCAGCAGATTGGAGCGCTTCCTCTCAACGGCACGCGCATGGACAAGGAGAGATCCTCAGTGCTTCTTGCCCTGCATGGCTCCATAGTGGTTGGTATTGACTACGACTGCAGAGAAAGGAAGGTTTATTGGACGGATCTTGCTGGAAGAACGATCAGCAGAGCCGCTCTGGAGCCTGGATCAGAGCCTGAGATTCTCATTAACACCGGTCTCATGAGCCCAGAGGGTTTAGCCGTGGATGTGGCACGCAGGAGGATGTTCTGGGTAGACAGCACGCCAGATAAAATCGAGACGGCCAAACTGGATGGAAGCGACCGACGTGTTCTGTTCAACACTGATTTGGTTAATCCCAGAGCCATCATAGTGGACTCTCTCTCAGGAACTCTGTACTGGACCGACTGGAATCGGGAAGCCCCGAAAATTGAAAGCTCCACCGTGGAAGGGCAGAACAGGAGGGTGCTAGTGCAGGACGGCATTGGGCTCCCTAATGCTTTGACGATTGACCCCACAACACGTCGTATCTGCTGGGCCGATGCAGGGACAAAGCGTTTGGAGTGCATCGCGCCTGATGGGACGGGCCGACACGTGATTCACAGCAACCTGAACTATCCGTTCAGCATGGTGTTTTACGCCAATCACTTCTACTACACAGACTGGAGGAGGGATGGAGTCATTGGTGTAAGTCGAGACTCAAGCCATTTTACAGATGAGTATCTGCCTGATCAGCGTTCACATCTGTACGGCATCACTGTCGCCTCCTCCAGCTGTTTATAGGagaggACGTAataacagagccactgttaCATGGTGCTATTTTtcaaggatgttttttttgtagtgttcaCACGTTGGGAAACGAACGCCTCTCTCAGCCGTTGCCAAAGCCCCTGCATCTTTATAAACCCCCCAAGAAAAAAGGTGACTCTTTTCCCTGTTTagttttgtacatttgttttaTACCTCATTTCTTTCTACtgtatttttgtggttttttaataaaagaaagcCAAAGAGGCCcaaattatagtttttttttgtgcaaaacgTTCAtgtgtataaatacatttatacacgCGTGCAGTATTGGAGCCCTCTGTGCACTAATAAGAATCCGACGTATGGAAATGCATTGAACATAGccgatgtttttcttttactacAGTCCCTttttgtaacctttttttttatcttttgtaaGATGTGatatttataacaataaaaagtgATTCACAATTTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202841 lncRNA downstream 46975 25008099 ~ 25009389 (-) True G171381
TU202682 lncRNA downstream 130140 24856891 ~ 24926224 (-) False G171256
TU202679 lncRNA downstream 154324 24827641 ~ 24902040 (-) False G171256
TU203040 lncRNA upstream 154849 25261608 ~ 25262527 (-) True G171542
TU203043 lncRNA upstream 157609 25264368 ~ 25265970 (-) True G171545
TU203041 lncRNA upstream 161143 25267902 ~ 25271762 (-) True G171543
TU203078 lncRNA upstream 179283 25286042 ~ 25286781 (-) True G171572
TU203076 lncRNA upstream 180393 25287152 ~ 25289502 (-) True G171570
XM_026926447.2 mRNA downstream 9578 25009783 ~ 25046786 (-) True si:ch211-266o15.1
XM_026926062.2 mRNA downstream 64536 24974039 ~ 24991828 (-) True cep295
XM_026926064.2 mRNA downstream 64537 24974039 ~ 24991827 (-) False cep295
XM_034308379.1 mRNA downstream 512285 24490238 ~ 24544079 (-) True luzp1
XM_026926883.2 mRNA upstream 75657 25182416 ~ 25206473 (-) False txndc16
XM_026926884.2 mRNA upstream 77288 25184047 ~ 25206473 (-) True txndc16
XM_026926785.2 mRNA upstream 133327 25240086 ~ 25252303 (-) True ero1a
XM_026925989.2 mRNA upstream 213751 25320510 ~ 25335259 (-) False gch1
XM_026925990.2 mRNA upstream 213751 25320510 ~ 25335257 (-) True gch1
TU202681 other downstream 249269 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 2192597 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 2940488 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 4239148 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 4323312 20732930 ~ 20733052 (-) True LOC113530231
TU203072 other upstream 152080 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 152080 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 472180 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 2792732 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 2792732 27899491 ~ 27910890 (-) False si:ch73-204p21.2

Expression Profile