RNA id: XM_034308077.1


Basic Information

Item Value
RNA id XM_034308077.1
length 1675
RNA type mRNA
GC content 0.46
exon number 6
gene id lrrc57
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 28867671 ~ 28877881 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgataaaaaaataaataaaccacagCAACGGTCTGTATGTCCactagttagcttgctagcacCTTCCGCACCCTGGCGTTCTGTAATTTCCAAACTTTCATCATTTTATGGGAGATATTTTTCATGTCAGGTTTGAGTTAAAGTGAACTTTGCTGGGATTTTATGAACTTGTGTACTCAGTTTGTTGTCCGCGCACGGATTATTTTTGGATTAGCTTCGGTACCGGAGatagcttagctagctaactagctagctagagtaAAGAGAGGCAGTGTAAATGGGGAACAGCGCTCTCAAAGCTCACCTGGAGACCTCACAAAAAACCGGCGTGTTTCAGTTAACAGGCAAAAACCTGCAGgagTTTCCGGAGGAGTTACAGCGGCTCAGCGGGAATCTGCGCACTGTCGACTTGTCCAACAACAGGATCGAGACGCTGCCCGTGTTTATAGGAAACTTCCAGCAGCTGAAGAGTCTCACCATCAGCAACAACCGCCTGACCAGTCTCCCTGCGGAGATGGGGAAGCTGAGGAAGTTGGAGACGTTGGTGTTGAACGGTAATCATCTCTCTCAGCTCCCCGCCTCGTTCTCTCAGCTCAGAGCTCTGCGCACGCTCAGCCTCTCGGCCAATCACTTCAGAGAATTTCCCAGCAGCCTCGGCTCCCTGCGTCAGCTCGACGTCCTCGACCTGTCCAGAAACCGCATACAGGCCGTTCCTGCCGAGGTGTCCGAGCTGCAGGCCATCGAGATCAACCTCAACCAGAACCAGATCTCCGCTCTGTCTCCGGAAGTTTCTCGCTGTCCGAGACTGAAGGTGCTGAGGTTGGAGGAGAACTGCCTGGAGCTTTCCTCCATCCCCACCtccatcctcacacactccagcgTGGCTCTGCTCTCCCTCGAGGGAAACCTGTTCGAGGTGAAGAAGCTGCGCGACCTCGACGGATACgacaagtaCATGGAACGCTTCACGGCGACGAAGAAGAAATTTGCATGAAggacaaaaaaaccccaaaaaaacggGTAACTAGGGACACgacagaaaagaacagaaaaatatttcagtgaagATTAAAACTGCAGCGCCGAGTTTCTGCTGTACGGAAAACTTCAGCGAGGAATCACTACACAGCGTATAACACACGGCGTTAGAGCGGCAAGATGTCACGCTTTAACGTCCTCACACACAGGTTTCAGAGTGTTtaaatccaacacacacacacacacacacacacacacacacaggtggagTGCGACACTCAAACTTCAAATACATAGAGTTTGTAGTACAGAGAGTCAAACACGAGGCGTTAAAGATCTTAATTAATTTACGTTCATTCATTTTATGATAATTTATAATACTTCACATAATTGTCAGTAACTTCCAAGTTATTTTAAACAGGCACTGAggtttcagatttttatttgttcactGTTTGATTTTCAAAACCAACATCaggatttctctctctctctctctctctctgtctgtctctctgcctttaTCTCAGTAGTCACATCCTCCTCTCTGTGCTGGAAAAAAACTACATAAAGcacatatttatttgaaatagaGCCATTTACTGACTGTTAAACTTAAAAAATAGGCATCAGACAGTTGCAAAAGTATACCTAGACCTCTTATTAATGTCTTATTAAAGTCTTATTAACGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205129 lncRNA downstream 996 28865913 ~ 28866675 (-) True G173268
TU205162 lncRNA downstream 3504 28862908 ~ 28864167 (-) True G173289
TU205147 lncRNA downstream 5063 28862052 ~ 28862608 (-) False G173282
TU205149 lncRNA downstream 5063 28862052 ~ 28862608 (-) True G173282
TU205145 lncRNA downstream 5802 28861401 ~ 28861869 (-) False G173282
TU205103 lncRNA upstream 56079 28933960 ~ 28985241 (-) True G173260
TU205104 lncRNA upstream 56079 28933960 ~ 28983936 (-) False G173260
TU205105 lncRNA upstream 56079 28933960 ~ 28984061 (-) False G173260
TU205107 lncRNA upstream 136468 29014349 ~ 29014929 (-) True G173262
TU205226 lncRNA upstream 192154 29070035 ~ 29071425 (-) True G173338
XM_034308073.1 mRNA downstream 7660 28798149 ~ 28860011 (-) False ralgapa1
XM_034308071.1 mRNA downstream 7660 28798149 ~ 28860011 (-) True ralgapa1
XM_034308072.1 mRNA downstream 7660 28800742 ~ 28860011 (-) False ralgapa1
XM_034308074.1 mRNA downstream 7661 28798149 ~ 28860010 (-) False ralgapa1
XM_034308075.1 mRNA downstream 7662 28798149 ~ 28860009 (-) False ralgapa1
XM_034308308.1 mRNA upstream 4371 28882252 ~ 28885109 (-) True il17a/f2
XM_026925987.2 mRNA upstream 23023 28900904 ~ 28908552 (-) False stmn4l
XM_034307776.1 mRNA upstream 38495 28916376 ~ 28928895 (-) True gpn1
XM_034307851.1 mRNA upstream 109478 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA upstream 109478 28987359 ~ 28996156 (-) False khk
TU204662 other downstream 955127 27912237 ~ 27912544 (-) True G172919
TU204658 other downstream 956781 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other downstream 956781 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU203284 other downstream 3285144 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 3608309 25258839 ~ 25259362 (-) True G171569
XR_004578919.1 other upstream 23023 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other upstream 23023 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other upstream 23023 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other upstream 23023 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 358038 29235919 ~ 29239270 (-) True G173434

Expression Profile