RNA id: XM_034308217.1


Basic Information

Item Value
RNA id XM_034308217.1
length 2451
RNA type mRNA
GC content 0.56
exon number 19
gene id ttc7b
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29075602 ~ 29087181 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAAatcaactacactacacactgcacacacctcACTAACGCCCTACAGCGCGGGAACCTCCGGGTGAGTCTCAAatcaactacactacacactgcacacacctcACTAACGCCCTACAGCGCGGGAACCTCCGGGTGAGTCTCAAatcaactacactacacactgcacacacctcACTAACGCCCTACAGCGCGGGAACCTCCGGccggaGCTGCAGCAGGAGGCGAACGTGCTGATGGGGAAGTTGTGTTATGTGGAAGCCAACTACAGCGAGGCCCTTACTCACTTCAGCCGTGTGAACTTGGACGATATGCAGCTGAGCAGCGCTCCAATTTACCGCCTGGCCATGATCGCTGAAGCCTATGCCACCAAGGGTTTGTGTCTGGAGAAGATGTCCACCTCCTGTCCACCATCCAGCGCTGAGCGAGATCAGGAGATCATCACCTGCTACGAGAAGTCTGGAGATATCGCTCTGCTCTACCTGCAGGAAGCCGAGAAGGCTCTAAGCGCCGGAATGCAGAACCGCAGTCCCAAACCCGGCCCCGTCTCACAGGAACAAGAACTCGGCTTCTTTCTGGAGACGGGACTCCAACGTGCCCACGTTATCCACTTCaagaatggtaatcTGACGTGTGGTGTCGGACGGTTTCGAGAGATTCTCCGTGCTGTGGAAACGAGAACCACACAGAACCTTCgtatgaccaTAGCGCGTCAGCTGGCGGAGATCCTGCTCAGAGGGATGTGTGAACAGAGTTATTGGAGTCCGCTGGAGGATCCGCCTGCACAGTCTCCGCTTGACGAACCgcagtgttcacacacacacaccgagtacACACTGCCCCGCCGAGCACGCATCTACACAGGGGAGAATCTGTTTTGTCCTCAGGAGAACACGGAAGAAGCTCTGCTGCTGTTACTGATTAGTGAATCTATGgCTAACAGAGATGCAGTGTTGAGTCGTATACCTGAACACAGTGCTGATCGGGTGTTGAGTCTGCAGAGTGCGTCAGTAGTGTACGATCTGCTCACCATTGCTCTGGGACGACGCGGCCAGTATGAGATGCTCTCTGAGTGCTTGGAGAGAGCGATGAAGTTTGCGTTTGAGGAGTTCCACCTGTGGTACCAGCTGGCGCTCTCACTGATGGCAGCAGGAAAGtctgcGCGGGCAGTGAAGGTGTTGAAGGAGTGTATGCGTCTGAAGCCGGATGATCCCACCATCCCTCTGCTCGCTGTGAAGCTGTGTATAGGAAACCTGCACTGGctggatGAGGGTGAGTGTTTTGCTCAGATGGTTGTAGACATGCAGGATAAAGCAGCAGAGTTCAGGGCAAAGGGTTACCTCGCACTCGGCCTCGTCTACAGCCTGAAAGCCACGGAcgcGTCTCTGAGGGGCGTGCAGGAGGAGTATCAGAAGAAAGCTCTGGGAGCGTTTCAgagagctcaGTCTCTTGCTCCTACAGATCACCTGGCTGTGTTCTACCTGGCTCTGCAGCTTGCAGTGTCTCGCcagatccCCGAGGCGTTGGGGTATGTGCGTCAGGCTCTCCAGCTGCAAGGGGATGATGTTCACTCGCTACACCTCCTGGCTCTGCTGCTCTCCGCTCAGAAGCACTACCACGACGCCCTCAACATCATCGAGATGGCCCTCAGCGAGTACCCCGAGAACTTcatgttgcTCTTCACTAAGGTGAAGTTGGAGACATTGTGTCGAGGCCCTGAAGAAGCTCTGCTCACCTGTAAACACATGCTGCAGATCTGGAAGTCCTGCTACAACCTTACCAACCCCAgtGATTCAGGGCGGGGCAGCAGTCTATTGGACAGGGCCGTAGCTGATCGGAGGCAACTGAATGCTGTAACGCTGCCAGACTTCAGTGACCCAGAGACAGgcTCAGTGCACGCTCCGTCAGTAGCAGCATCGCGGGTGGAGCAGGCTCTGTCTGAAGCTTCCTCCCTGCAGAGCAGCACTCCTAAACACGGACCCCTGCACCCCTGGATGACCCTCGCTCAGATCTGGCTACATGCAgcggAGGTGTATATTGGGATGATGAAGCCGGCCGAGGCGATGGCGTGCACTCAGGAGGCAGCGAGTCTGTTCCCGACATCCCATAATGTCCTGTTCATGAAGGGCCAAGTGGCTGAGCTCAGAGGAAACCTGGAGGACGCTAAGCGCTGCTATGAGGAAGCTCTGGctataagccccgcccacatccGCAGCATGCAGAGGCTGGGAGTGATCCTGTACCAGCTGCAGAGGTTCTCGTTAGCGGAGAAGGTTCTGTGTGAAGCCGTACAGCTGTGTTCCTCGTCTCACTCCGGCTGGCACAGTCTCGCTGAGGTGCTGCAGGCGCAGGGCAACATGGCCGCCGCCTCCGAGTGCTTCCTCACTGCGCTGCAGCTGGAGGCCAGCAATCCCATCATGCCTTTCACCATCCTGCCCCGTGCACTCTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205052 lncRNA upstream 3638 29071532 ~ 29073089 (+) False G173221
XR_004578930.1 lncRNA upstream 22517 29053136 ~ 29054210 (+) True LOC117598233
TU205028 lncRNA upstream 83257 28990797 ~ 28993470 (+) True G173209
TU205026 lncRNA upstream 87021 28989119 ~ 28989706 (+) True G173208
TU205062 lncRNA downstream 30505 29117324 ~ 29119753 (+) True G173228
TU205050 lncRNA downstream 81947 29168766 ~ 29173464 (+) True LOC117598323
XR_004578993.1 lncRNA downstream 82015 29168834 ~ 29173095 (+) False LOC117598323
TU205073 lncRNA downstream 83055 29169874 ~ 29170599 (+) True G173237
TU205268 lncRNA downstream 134234 29221053 ~ 29221649 (+) True G173371
XM_034308248.1 mRNA upstream 9390 29054233 ~ 29067337 (+) True kif28
XM_034307949.1 mRNA upstream 25288 29028670 ~ 29051439 (+) True ahctf1
XM_026911914.2 mRNA upstream 50489 29008520 ~ 29026238 (+) True snap25b
XM_034308360.1 mRNA upstream 69961 28997024 ~ 29006766 (+) True ankef1b
XM_026911907.2 mRNA upstream 92858 28968131 ~ 28983869 (+) True emilin1b
XM_034308249.1 mRNA downstream 6645 29093464 ~ 29099364 (+) True nrde2
XM_034308299.1 mRNA downstream 17509 29104328 ~ 29114239 (+) False fam149b1
XM_034308296.1 mRNA downstream 17509 29104328 ~ 29114237 (+) True fam149b1
XM_034308297.1 mRNA downstream 17509 29104328 ~ 29114237 (+) False fam149b1
XM_034308298.1 mRNA downstream 17509 29104328 ~ 29114237 (+) False fam149b1
TU205054 other upstream 3638 29069720 ~ 29073089 (+) True G173221
trnak-uuu_7 other upstream 1351448 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1611078 27156343 ~ 27465649 (+) False nrxn3a
TU205058 other downstream 6672 29093491 ~ 29138776 (+) False nrde2

Expression Profile