RNA id: XM_034308219.1



Basic Information


Item Value
RNA id XM_034308219.1
length 462
RNA type mRNA
GC content 0.59
exon number 2
gene id mrpl57
representative True

Chromosome Information


Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29072704 ~ 29075467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GAACCGCACTGATGCCAGAGTAAGGcgcggtgcattgtgggaaggTGCGCGAGCCGAATCACAGGAGGAGAAACCCATAACACGGAAAGaagattaatttaattaaagaagGATGTTCCTGACTCTGGCTCTGCTGCGGAAGGGAATTCCCGGCCGGCAGTGGATCGGGAAGTGGCGCCGGCCACGCCCAGTCACCTGGCAGATGAAGCGGAACACGGTGGAGCGACTGGAGCGAGAGGCTGAGAACGAGTACTGGCTGAGCCGACCTTACCTGAGCCTCGAGCAGGAGAGAGGCCACGCCCACGCTCGccgcacacacacctgggagACCCTCCGCCACGCCCGCCAGTCCGCCTTCCCCCCGCACACCTCCATTACTGAACACCTGCAGCACCTGAACACCACCCGCACCTGgagctaacacacactcagggctCTTAATAAAGCACTGAATCACTGTTA

Function


GO:

id name namespace
GO:0005761 mitochondrial ribosome cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU205226 lncRNA downstream 1279 29070035 ~ 29071425 (-) True G173338
TU205107 lncRNA downstream 57775 29014349 ~ 29014929 (-) True G173262
TU205103 lncRNA downstream 87463 28933960 ~ 28985241 (-) True G173260
TU205105 lncRNA downstream 88643 28933960 ~ 28984061 (-) False G173260
TU205104 lncRNA downstream 88768 28933960 ~ 28983936 (-) False G173260
TU205228 lncRNA upstream 796 29076263 ~ 29077297 (-) True G173339
TU205160 lncRNA upstream 2947 29078414 ~ 29080610 (-) True G173288
TU205240 lncRNA upstream 32409 29107876 ~ 29108297 (-) True G173349
TU205241 lncRNA upstream 32409 29107876 ~ 29108297 (-) False G173349
TU205336 lncRNA upstream 156146 29231613 ~ 29231919 (-) True G173431
XM_034307851.1 mRNA downstream 76547 28987359 ~ 28996157 (-) True khk
XM_034307850.1 mRNA downstream 76548 28987359 ~ 28996156 (-) False khk
XM_034307852.1 mRNA downstream 76549 28987359 ~ 28996155 (-) False khk
XM_034307776.1 mRNA downstream 143809 28916376 ~ 28928895 (-) True gpn1
XM_026925987.2 mRNA downstream 164152 28900904 ~ 28908552 (-) False stmn4l
XM_034308210.1 mRNA upstream 13705 29089172 ~ 29092223 (-) True calm1a
XM_034308211.1 mRNA upstream 13767 29089234 ~ 29091389 (-) False calm1a
XM_034308295.1 mRNA upstream 42906 29118373 ~ 29130728 (-) True ndnfl
XM_034308366.1 mRNA upstream 62553 29138020 ~ 29146605 (-) True LOC113525666
XM_034307914.1 mRNA upstream 170502 29245969 ~ 29329065 (-) True smyd3
TU205159 other downstream 22678 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other downstream 164152 28900904 ~ 28908552 (-) False stmn4l
XR_004578918.1 other downstream 164152 28900904 ~ 28908552 (-) False stmn4l
XR_004578917.1 other downstream 164152 28900904 ~ 28908552 (-) False stmn4l
XR_004578916.1 other downstream 164152 28900904 ~ 28908552 (-) True stmn4l
TU205341 other upstream 160452 29235919 ~ 29239270 (-) True G173434
TU205344 other upstream 251459 29326926 ~ 29329076 (-) False smyd3

Expression Profile