RNA id: XM_034308225.1


Basic Information

Item Value
RNA id XM_034308225.1
length 4290
RNA type mRNA
GC content 0.47
exon number 27
gene id mthfd1b
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 19646283 ~ 19669547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCGGCGCGCGCGCGGCTGGAGCAGCAGCGGCAGGGTTTCAGTGCGCAACGGAAATTGCGTGGATCATTTCTaagcgtgtgagtgtgtgtgagtgtgtgtgtgagtggtgaaCTTCTGGACAGAGTGGTCAACTTTGTTCTCTGGAGAAGAGAAAGTCAGGAAGCCTACCATGTCGGCCCAAATCATCAGCGGAAAAGAAGTCTCAGCCCAGGTGCGAGAGAGGCTGAAGAAGCAGGTGGAAGAAATGAAGACTCAAGACCCAAACTTCAGACCAGGCTTGGTGGTGTTACAGGTGGGAAACAGAGAGGACTCAAACCTGTACATCAGCATGAAGATGAAAGCTGCTGCTGAGATTGGAATCAATGCGATGCACGTGAGGCTTCCACAGACCGCTACTGAAGAAGAGGTCCTGCAGCGCATCAGAGAGATCAATGAGAACTCCAGTGTGCATGGGCTCATAGTGCAGCTGCCTTTGGACTCCATTCACCGCATTGACACTGAGAAGGTCACCAACGCTGTGGCACCAGAGAAGGATGTAGATGGTTTGACTAGCATTAACGCAGGGAAACTGGCCCGGGGTGACCTTGGAGACTGCTTCATTCCCTGCACTCCCAATGGCTGTATGGAGCTCATTAAACAGACAGGTGTATCCGTGGCAGGAAAACGGGCAGTTGTGATTGGCCGCAGTAAGATTGTGGGTGCACCAATGCACGACCTCCTGCTCTGGAATCACGCCACTGTTACCACCTGTCACTCAAAAACTGCTGACCTGGCAGCTGAGgtGGGAAAGGCAGACATCTTGGTGACCGGGATTGGGAAACCGGAGATGGTGAAGGGCGAGTGGGTGAAGAAAGGTGCTGTAGTCATTGACTGTGGCATCAACCATGTTCCAGACAGCACCAAGCCAAGTGGGAAGCGGGTTGTAGGTGATGTTCACTTTGCCACTGCCAAGGAGCAAGCAGCCTTCATCACGCCTGTCCCAGGTGGAGTCGGCCCCATGACTGTCGCCATGCTCATGCAGaatACCGTACTGAGTGCCAAGCGCTTCCTTCAAGCACATGAACCAGGCAAATGGAACATCTCTTATACCAAGCTCAACTTGCAGAGACCCGTTCCCAGTGATATCGTTATTTCCCGCTCCGGTATACCCAAGCCCATTGACCGTCTGGCCAGAGAGATCGGGCTTCTCTCGGATGAAGTCGAGCTCTATGGCAAGACCAAAGCCAAAGTCCAGTTGGAAACTATTGATCGATTGAAGTCCCAGGCTGATGGCAAATATGTGGTTGTTACTGGGATCACTCCTACACCTCTTGGTGAGGGGAAAAGCACCACTACGATAGGGTTAGTGCAGGCTCTTGGTGCTCACCTCAAGTGCAATGTGTTTGCCTGCGTGCGCCAACCATCTCAAGGCCCCACGTTCGGCATCAAAGGTGGTGCAGCTGGAGGTGGCTATTCTCAGGTTATTCCCATGGAAGAGTTTAATCTTCATCTCACTGGTGATATCCATGCCATCACTGCTGCAAATAACCTGGTGGCTGCTGCCATCGATGCTCGTATGTTTCATGAAGCCACTCAGTCTGATAAGGCACTTTTTAACCGCCTGGTGCCGCTAAGTGGAGGCCAGAGGAAGTTTTCCCCTGTGCAGATCAACCGACTCAAAAAACTGGGCATTGAGAAAACTGATCCGTCCGCACTGACAGAGGAAGAGATCACTCGCTTTGCCAGGCTGGACATTGACCCTGAATCAGTCACCTGGCAAAGAGTGTTGGACACAAATGATCGATTCCTCCGGAAGATTACCATTGGCCAAAGCCCCACTGAAAAGGGCTATACCAGAGCAGCTCAGTTTGATATCACGGTGGCCAGTGAGATCATGGCTGTGTTGGCTCTCACCAGTAGTCTGGAGGACATGAGGCAGAGGCTTGCTAAAATGGTGGTAGCAACCAGTCGCAGTGGAGAGCCCATCACCACAGAAGACCTGggtgtgtgtggagCACTGACAGTGCTAATGAGAGATGCCATCAAACCCAACCTTATGCAGACCCTAGAGGGAAACCCTGTGTTTGTTCACGCCGGCCCTTTCGCCAACATCGCCCATGGAAACTCCTCCATCCTGGCTGATAAAATCGCTCTGAAGCTTGTAGGGCCTGAAGGATTTGTGGTAACTGAGGCAGGCTTTGGTGCAGACATCGGCATGGAGAAGTTTTTCAACATTAAGTGTCGTTACTCCGGGCTGCGTCCTCACGTGGTGGTGCTGGTCGCCACAGTGAGAGCGCTGAAGATGCACGGGGGTGGACCAACGGTCACAGCTGGCATGCCTCTTCCAAAGGAATACATAGAAGAGAACCTGGAGCTGGTGGAGAAAGGCTGCAGCAACCTGAGGAAGCAGATCGAGAATGCCAAGCACTTTGGTGTGCCAGTTGTTGTAGCAGTCAATGCTTTCAAGACAGACACTGATGCTGAACTGCAGCTGATCTGTGAGCTGGCTAAACAGGCAGGAGCGTTTGATGCAGTGCCCTGCACTCACTGGGCAGATGGGGGTGCTGGAGCCACTGAGTTGGGCAAAGCCGTGCAGAAAGCTGCAGAAGCACCCAGCAACTTCAGCTTCCTGTACGACACTGAGTTGCCTGTCGTTGATAAGATCAGAATAATTGCACAGAAGATTTACGGAGCAGATGATGTCGAGCTGCTCCCAGAAGCCCAGCATAAAGTGGAGCTATACACCAAACAGGGTTTTGGCAATTTGCCCATCTGTATGGCAAAGacccatctgtctctttctcatgaTGCTGAAAAGAAGGGTGTGCCCACTGGCTTTGTGCTACCTATTCGTGATATTCGTGCGAGCGTTGGTGCTGGGTTTCTCTACCCACTGGTTGGCACGATGCCCACCATACCAGGCCTCCCAACACGCCCCTGTTTCTACGACATAGATCTGGATCCAGTGACTGGAGAAGTCATCGGTCTCTTCTAACAGATGCTGAATTGAATCCCCCGTAGGCACACTTCTGAACCAGATGTTTGTAATGGTTTAATTAGGAAGCTATATGAGTAGAGTTATAATCATTTCCTGATTGTTTCATAGTTTGTAAGTGGTCTTCATAGTTGTTGGATCAGTATTACAACTATAAGAGTGTTCTGCTATGGAGAGATGTTCTTAGAACTGACAAACTCTCAGAGCCAGCAAAGCCctaaatatttacattcaatTAAATGGGAATGTAATTTGTATGTGATGGGTGGAATTATTCCAACGTACAATCGCTAAAGCCCTTCTAACTGGCCTTGATTCGAgcaattatgcattttatgtaCAGTTAGTTGACACAATGTTGAAAGCATGAGACATTGTGAAAAATTCACAAAGTAGGTCAACAGACTTGGTTAGACACGTAATCATGTGCccattataaaaacaaattaaatcaaaGTGCAGCATGGGAAATTTAAAAATTAGCTACTATCACATCACCTTCCCCATTGAATGTAGTTAAATATggagctgtatttttttctgccaatttggagcatttttaaattcaaagtGCATCACGAATAATGACTACTGGCAATGTGCTTGAGATTGTACGATGGAATTTTTCAGTAGAACTGTGTTAAAACAACAGTTTAATATGAACTATTAGGTATAGGTATTATTACACTTTACGTTAGGGAGGAATACTCTGGAAATTTAGACACAGGAAAACAAAACCAAGTTCATCTGCAAGCAATGTGAAtcagaaaatctgaaatagttaAGAAgggctttttttcttcatacatATAGCATTCCTTTAATGGTACACTACATGATAAATGATCCACTGTATTAATTCTCTGTTACTCTTTGAACTGACAATTTCAGAAATGTACCTGCCATGCAAGTGAAATTTACACAGTCATCATTAAGTAGTACTGAAGATGGTCATGTAATGACTAAACATGGCTTATGTAGGCTGGTTTAAAGACAAAGCTGAGGACTGGAAAAATTGGGGACATGCCCTCAGTTCTATTCCAAACAAACTCTTTAACGTCCAGGTTTGTAACTGAAAGAACTAAGAACTGTAAAGAGTTTATAAACTGTTCACTGTTAAAAGTTTCTCCTATGTCTTAACCttgactttttttcttcatggaattttttttctggaagtCTGACATGGTGTACATGTCCTTTGAATGTCTGAATCACTGTTGTCTTtttacaaaatgaaacatttaaaccTAAAACTGGAACCCCATCTCCATTCCGACAGTCTTGTTAAATAAAGGCATATCCCTTAAAGGCA

Function

GO: NA

KEGG:

id description
K00288 MTHFD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase / formyltetrahydrofolate synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199143 lncRNA upstream 49316 19596423 ~ 19596967 (+) True G168207
TU199088 lncRNA upstream 121428 19523154 ~ 19524855 (+) True G168175
TU198910 lncRNA upstream 667807 18977016 ~ 18978476 (+) True G168011
TU198789 lncRNA upstream 804673 18839609 ~ 18841610 (+) True G167913
TU198785 lncRNA upstream 808961 18837091 ~ 18837322 (+) True G167909
TU199117 lncRNA downstream 13429 19682976 ~ 19687591 (+) False G168191
TU199406 lncRNA downstream 53233 19722780 ~ 19763345 (+) False LOC113538915
TU199473 lncRNA downstream 103343 19772890 ~ 19774666 (+) True G168504
TU199571 lncRNA downstream 218380 19887927 ~ 19888154 (+) True G168585
TU199619 lncRNA downstream 318101 19987648 ~ 19987870 (+) True G168630
XM_034308207.1 mRNA upstream 16163 19620847 ~ 19630120 (+) False LOC113538896
XM_034308209.1 mRNA upstream 16163 19620859 ~ 19630120 (+) False LOC113538896
XM_034308208.1 mRNA upstream 16163 19621338 ~ 19630120 (+) False LOC113538896
XM_026934326.2 mRNA upstream 16163 19621347 ~ 19630120 (+) True LOC113538896
XM_026934235.2 mRNA upstream 153920 19477213 ~ 19492363 (+) True LOC113538831
XM_034308156.1 mRNA downstream 54363 19723910 ~ 19766581 (+) True LOC113538915
XM_026934352.2 mRNA downstream 54363 19723910 ~ 19766581 (+) False LOC113538915
XM_026934353.2 mRNA downstream 56916 19726463 ~ 19766581 (+) False LOC113538915
XM_026933767.2 mRNA downstream 109021 19778568 ~ 19809259 (+) True plcb2
XM_026934292.2 mRNA downstream 167711 19837258 ~ 19839847 (+) True LOC113538872
XR_004578955.1 other upstream 1274312 18330468 ~ 18371971 (+) False ldah
XR_003403895.1 other upstream 1326207 18319970 ~ 18320076 (+) True LOC113539017
XR_004579004.1 other upstream 1720263 17925706 ~ 17926020 (+) True LOC117598336
XR_004578941.1 other upstream 1731296 17876601 ~ 17914987 (+) True kidins220a
TU197931 other upstream 1939451 17700500 ~ 17706832 (+) False itgb1bp1
TU199111 other downstream 5366 19674913 ~ 19687591 (+) True G168191
TU199113 other downstream 9768 19679315 ~ 19687591 (+) False G168191
XR_004578946.1 other downstream 210188 19879735 ~ 19886509 (+) True zfyve19
XR_004578926.1 other downstream 244086 19913633 ~ 19922401 (+) True LOC113538658
XR_004578927.1 other downstream 244086 19913633 ~ 19914709 (+) False LOC113538658

Expression Profile