RNA id: XM_034308237.1


Basic Information

Item Value
RNA id XM_034308237.1
length 2262
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC113534079
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26312809 ~ 26321625 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGATCTAACAAAGTATGGCTGAAAATATGGAGAAACATCCATGCAAACGCGTTTTTATCAACAATGTGGATAATTATACCTCAAAATATATAGGAAAGTTTTTAGCCTCATGTGTAGTTGGAGCATCCCATTTTCCTGAACAATTACAGGATGAGCAGGCAAACGAGTCAAGTTCCCAAAAAGAAGGATTTTATCAGATTGTTGGAACCGTTTCGGGTAAAATGGAGAAGAAGTCCAGTTTTACAGTAGAAGAATATACTAACTTAACACGTGAAGAGCTTTTCCATCACCTGATGGAGTCGGATGTTgtcatttataacatttacagcGAGCATGCTGATCAGATAGACGAAGCCTCTTGGGCGGTCTCAGCTCTTCACAAAGAAATCGATGCATTTCCTGGACCGAAGACGTTCATCTTAATCTCCTCGGTCATGACATGGGCTCTGACTAAGACACTCGATCCAGACGATCCAGTGATTCATCTTACAGAATGGGACTACAGGAGACGGAAACCGCATCCCAACTTTAAGGATCATCTCGCTGTGGAGAAGCTTGTGGTTAAACTGGGAAAATCTAATCCGTCACAGTTCTCTACTTATGTGGTTGCATCTGGACTGCAATATGGAAAGGGAGAGCAAgcgtttcatttctttttcaaggTAAATTGGCTGGGAGAGGAACGCTGGCGTGCCGATCTTCGAGACGGCTCCAATATCATTCCTGCTATTCACATCAGTGATCTGGCAGGgaTTGTACAGAATGTAATCGACCGTAAGCCGAAGCCGCAGTACTTTCTTGCAGTGGATGAATCACAGAATACCATTGCTGACATTATCAGCGCAATAGCGTTGGTGCTCGGGTCAGGAAAACCCAAAACGTTCCAGAAGAGGacgattttttttatagaagaaTTGACACAATCAGAAATTGACCATTTGTTCGTCAACCTTCGAATGGAAGCCATTTTTTTGAATAAGAATATCAGTAAAGTGAATTTCAGTATCAACTGGGTTTCAAAGAGAGGCATTGTTGAGAGCATCACCCGAATCGTGGAGGAGTACAAGCTCACCCGAGGCCTGCTGcctgttCACATCTGTGTCTTGGGACCTCCTGCTGTCGGGAAAAGCACCATAGCTGAAAAGATCTGCAAGCACTACAAACTGCACCATGTAAAACTCAAAGAGACCATCACTGAGACTCTCATGAACCTGGAGTCATGTGTCCGCGTGGGAGAGGCAGAAAAGAAAGGGGACGATGAATCACTTGGAACACAGGAGCTTTTGGAGACACTGACAaagaacatggaaaaaaatggagGCCGGTTGGATGGGCAGTATGTTATCCAAATCATGAAGGACAAGCTGAAGACTAAACCATGTAGAAATCAAGGATTCGTCCTGGACGGCTTTCCAAAGACATATGAGCAAGCTAAAGAGCTGTTTTGTGCCGAGGTTGATCAAGCTAAAGACGAGCGGTCAAAAATCCCTCCACACAACAAGGAAATCATCCCAGagtttgtGTTCTCTCTGGATGCCACTGACGAGTTCCTGGAGGAACGTGTGCTGAACCTGCCTGAGAATGTGGTGCAGGGAACGTCACACTCCGTGGAGAAGTACTTTCCGCGTCTGGCCACGTTCAGAAAAAACAATTCAGAGGATGAAGCTGTGCTGAAATACTTTGAAGAGCTGCTGATTCACCCTGAGCATATAGAGATTAATAGTGATGACTTGGAGAATGTCCTGGTAATGGAGAAGGTGATGGAGAGTGTGGGGAAGGCCAGGAACTATGGCCCCACTGCAAAGGATTTGGAGGAAGAGCGGAGGCAGGTGGAGATCAGATTGATGGAGAAGGAGGAGGCGCGTCAGGCTGAAGCCAAGCGCaggaaggaagaagaggagcagTGGGCACAGCAGCAGGAGGAATGGaaccGATGTCTGGATGAAGAGAGGCGACAGGAAGAGGCGCTGTTGATGGCAGAATCAGCTCCTCTCAGGCAATATTTGATGAACAGCGTGTTGCCCACCGTGATTCGAGGCTGCCTCGAGATCTGTGAGCTCCGACCAGATGATCCGATACATTTCCTGGCTGAATATCTCCTGAAAAACAATCCAGAAGTGCAACAAAACCCACCTGCATATGAAGATGAACCTCAAAACTGCGAGTCTGTGGGAACTTTTCAGGCCTTATtatttcagcGATAAGCTACAGAACAGAAGGTGTGTATTATTCTCTATCATTCACTGTTGCAGATCTGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203440 lncRNA downstream 254300 26058245 ~ 26058509 (-) True G171874
TU203430 lncRNA downstream 334782 25977796 ~ 25978027 (-) True G171864
TU203311 lncRNA downstream 533843 25773504 ~ 25778966 (-) True G171755
TU203274 lncRNA downstream 803189 25504388 ~ 25509620 (-) True G171726
TU203256 lncRNA downstream 842735 25469504 ~ 25470074 (-) True G171710
TU203600 lncRNA upstream 273656 26595281 ~ 26595483 (-) True G172016
TU203802 lncRNA upstream 450507 26772132 ~ 26773050 (-) True G172196
TU203813 lncRNA upstream 507693 26829318 ~ 26829729 (-) True G172207
TU203819 lncRNA upstream 548722 26870347 ~ 26870619 (-) True G172211
TU203821 lncRNA upstream 573143 26894768 ~ 26959616 (-) True G172212
XM_026926682.2 mRNA downstream 632068 25679314 ~ 25680741 (-) True cx52.7
XM_034308356.1 mRNA downstream 642834 25664338 ~ 25669975 (-) True manea
XM_026926505.2 mRNA downstream 652154 25651808 ~ 25660655 (-) True fut9a
XM_026926059.2 mRNA downstream 672588 25634727 ~ 25640221 (-) True fhl5
XM_026926867.2 mRNA downstream 678926 25620016 ~ 25633883 (-) True si:ch211-266g18.9
XM_034308046.1 mRNA upstream 41441 26363066 ~ 26403989 (-) True si:dkey-288a3.2
XM_026926840.2 mRNA upstream 419749 26741374 ~ 26794919 (-) False bcl11ba
XM_026926839.2 mRNA upstream 419749 26741374 ~ 26794919 (-) True bcl11ba
XM_034308270.1 mRNA upstream 497275 26818900 ~ 26845135 (-) False setd3
XM_034308271.1 mRNA upstream 497275 26818900 ~ 26844995 (-) True setd3
TU203284 other downstream 730282 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 1053447 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 1053600 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 1505714 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 3449042 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 1577866 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 1577866 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 1590612 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 2515267 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 2579279 28900904 ~ 28908552 (-) False stmn4l

Expression Profile