RNA id: XM_034308244.1


Basic Information

Item Value
RNA id XM_034308244.1
length 2003
RNA type mRNA
GC content 0.54
exon number 12
gene id sptlc2a
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26959823 ~ 26989620 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGACCGAGAGCGCGGTGAACAAGGAGGCGAACGGGGATGTGTGTCAGCACCGGGCGGTGAGCGGCGTGAGAGCGGGAAGAAGCAGCGCGCTGAAGGATCAGCACTGTCACCAGGAAAAGCACAGGTCCTTTCCCAAACATGACGACAAGCTGCACCAGAGCGAGTGTAATGGAGGCTTATACAGCAAGCCGTTCATCGAGTCGTTTGAAGAAACCCCGATGCTGGTGGCCGTGCTCACCTACATGGGCTACGGCATCCTCACCATCTTCGGCTACCTGAGAGACTTCCTCCGCCAGTGGAAGATCGAAAAGTGCCACATCgctagagaaagagaggaacaaAAGGATTTTGTTCCACTTTATCAAGACTTTGAGAATTTCTACACCCGAAATTTATATATGAGGATCCGGGACAGCTGGAACAGGCCCATATGCAGCGTGCCTGGGGACAAGATGGACCTGGTGGAGCGAGTGTCACATGACTACAACTGGACCTTCAGCTACACCGGCCGAGTGGTGAAAGACGTGATCAACATGGGCTCGTATAATTACCTGGGCTTCGCCAAGAACACGGGCTCGTGCGCCGACGCGGCGGCGGACGCCACTCTGAAATACGGCGTCGGCGTGAGCAGCACCAGGCAGGAGATGGGTAACCTGGACATGCATGAGGAGATGGAGAAGCTGGTAGCGAGGTTCCTGGGCGTGGAGTCGGCCATGGCGTTCGGGATGGGTTTCGCAACCAATTCCATGAACATTCCAGCCCTGACTGGCAAGgGGTGTCTGATTCTGAGCGATGAACTGAACCACGCCTCTCTAGTTTTAGGAGCGCGTTTATCTGGCTCCACCATCCGGGTTTTCAAGCACAACAACATGCAGAGCCTGGAGAAGCTGCTCAGAGACGCTATAGTGCACGGCCAGCCCAGAACCCACCGGCCCTGGAAGAAGATCCTCATAGTGGTGGAGGGCATCTATAGCATGGAGGGCTCCATCGTACGCCTGCCTGAAGTCATCGCCCTGAAGAAGAAGTATAAAGCCTACCTGTACCTGGACGAGGCTCACAGCATCGGCGCTCTGGGGTCCCGCGGTAGGGGCGTGGTCGACTACTTCAACCTCGACCCCACAGACGTGGACATCATGATGGGAACGTTCACCAAGAGCTTCGGCGCAGCGGGGGGTTACATCGGCGGGAGAAAGGAGTTGATAGATTACCTGCGCTCTCATTCTCACAGTGCCGTGTACGCCACCTCCATGTCGCCTCCCGTTGTGGAGCAAATTATCACTTCTAtgaagtgcattatgggagaGGACGGGACCACGATAGGCAGGGATCGCATCCAGCAGCTGGCGGAAAACACAAACTACTTCCGCAGGAGGCTGAGGGAGATGGGCTTCATCATCTACGGCAACAATGATTCACCTGTAGTTCCCATGATGCTCTACATGCCCGCCAAAATCGGGGCGTTTGGTCGGGAGATGCTGAAGAGGAACATAGGTGTGGTTGTCGTGGGCTTCCCTGCCACGCCCATCATCGAGTCCAGAGCTCGCTTCTGCGTGTCTGCGGCTCACACCAAAGAAACACTGGACACGgccctGAGTGCGATCAGCGAGGTGGGAGACCTGCTGCAGGTGAAATACTCGCGCCACAGAATCCTCCCGTCTCTCGATCGGCCCTATGACGAGACCACATACGAGGAGTGTGAAGACTGAACACCTTCCAGCCTCGATGGAAACGTGCACTGCTCTCTGTCCTTCCACAAGCTTCACTGAACCACTTAATACATGTCgtctttttaatttcatcatgaTTTTGTGAAGAACATGGAGCTCCTATTATACGgcttgctttctctttctttctttctttctctctctctgtcagttctCATCCATCACTTTGACATTCAAGATCTGTCCTTAACTCATTGTGACATTTATTTGAGGgcgaaaacaaaaaaaaaatgctttaattccTCGCTGCCAACCACAAGATGCTTTGGACTGCT

Function

GO: NA

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203821 lncRNA downstream 207 26894768 ~ 26959616 (-) True G172212
XR_004578992.1 lncRNA downstream 39286 26916818 ~ 26920537 (-) False LOC113534208
XR_003403481.2 lncRNA downstream 39286 26917086 ~ 26920537 (-) True LOC113534208
TU203819 lncRNA downstream 89204 26870347 ~ 26870619 (-) True G172211
TU203813 lncRNA downstream 130094 26829318 ~ 26829729 (-) True G172207
TU204297 lncRNA upstream 476252 27465872 ~ 27491804 (-) True G172635
TU204334 lncRNA upstream 575685 27565305 ~ 27566560 (-) False foxn3
TU204374 lncRNA upstream 734941 27724561 ~ 27725757 (-) False efcab11
XR_004578961.1 lncRNA upstream 774985 27764605 ~ 27768101 (-) True LOC117598276
TU204484 lncRNA upstream 797702 27787322 ~ 27787728 (-) True G172782
XM_026926758.2 mRNA downstream 3985 26929661 ~ 26955838 (-) True ism2a
XM_026926508.2 mRNA downstream 61515 26846846 ~ 26898308 (-) True ccdc85ca
XM_034308270.1 mRNA downstream 114688 26818900 ~ 26845135 (-) False setd3
XM_034308271.1 mRNA downstream 114828 26818900 ~ 26844995 (-) True setd3
XM_026926840.2 mRNA downstream 164904 26741374 ~ 26794919 (-) False bcl11ba
XM_026926575.2 mRNA upstream 8811 26998431 ~ 27003962 (-) True alkbh1
XM_026925974.2 mRNA upstream 493261 27482881 ~ 27489113 (-) True dio2
XM_026926481.2 mRNA upstream 539243 27528863 ~ 27557994 (-) False ston2
XM_026926482.2 mRNA upstream 539243 27528863 ~ 27557005 (-) False ston2
XM_026926479.2 mRNA upstream 539243 27528863 ~ 27553284 (-) False ston2
TU203284 other downstream 1377296 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 1700461 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 1700614 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2152728 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 4096056 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 909871 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 909871 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 922617 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1847272 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 1911284 28900904 ~ 28908552 (-) False stmn4l

Expression Profile