RNA id: XM_034308271.1


Basic Information

Item Value
RNA id XM_034308271.1
length 4362
RNA type mRNA
GC content 0.44
exon number 13
gene id setd3
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 26818900 ~ 26845135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTATGTTTTATGGATAAGAGAGAGGGAGTTTTATTTGAGCGGAATGAATCGTTTTGTGAATGACAGGACGTTTTGGGACAGAAATATGATGCTAACTCCCAGAGCTGCTGCATTAGACCAGGTGCCTGGAGCTGTATGAGATTAAAGGTGCTGTGGCTGGAAGGAATCTTCCCTCGTAACCGAGCCAGACGATGGGTAAGAAGAGTCGCGTGAAGACTCAGAAATCGGGGACAGGCGGGACAGCCGTGGTGTCCCCTAAAGAGATGATGAACCTGATCTCCGAGCTCCTACAGAaatgcagtggTGCAGCTCCGTCTCCAGGAAAGGAGTGGGAGGAGTACATCCAGATCCGCACCCTGGTGGAGAAAATCCGCAAGAAACAGAAAGGAGTGTCCGTGGTGTTTGAGGGCAGCAGGGAGGATTATTTCCCCGAGCTCATGGCCTGGGCAGCAGAATGTGGAGCGTCCTGCGAGGGCTTCGAGATCGCCAACTTTGGAGATGAAGGATACGGCCTCAGAGCCACCAAAGAcatcaagGCTGAAGAACTGTTTCTGTGGATTCCCAGGAAGATGCTGATGACCGTGGAATCGGCTAAAAACTCCATTCTTGGTCCGCTGTACGGTCAGGACCGGATCCTGCAGGCCATGGGCAACGTGACTCTGGCCCTGCACCTGCTCTGTGAGAGGGCGAACCCGGAGTCCCCCTGGCTGCCCTACATCAAAACCCTGCCCACTCACTACGACACGCCTTTATACTttgaggaggaggaagtgcgCCACCTGCTGGCCACTCAGGCCATTCAGGACATGCTGAGCCAGTACAAGAACACGGCGCGCCAGTACGCCTACTTCTACAAAGTCATCCATACTCATCCCAACGCCAGCAAACTGCCCCTGAAGGATGCTTTCACCTTTGACGACTACAGgtgggccGTATCATCTGTGATGACTCGTCAGAACCAGATCCCTACAGAGGATGGCAGTCGGGTCACCCTGGCTCTCATCCCACTCTGGGACATGTGTAATCACACCAATGGCCtgATTACGACCGGTTACAACCTGGAAGATGACCGATGTGAGTGTGTTGCTCTGCATGACTATAAAGAGAGCGAGCAGatctACATATTCTACGGTACAAGGTCTAACGCTGAGTTCGTCATCCACAACGGCTTCTTCTTCGAGGAAAACGCACACGACCGGGTGAAGATCAAGCTGGGAGTCAGTAAGAGCGAGAGGCTGTACGCCATGAAGGCCGAGGTGCTGGCCCGCGCTGGAATCCCGGCGTCAAGCGTTTTCGCATTGCACTGCAGTGAGCCGCCCATTTCAGCCCAGCTCCTGGCCTTCCTGCGCGTCTTCTGCATGACGGAAGAGGAACTCAGGGACTACCTAGTGGGTGACCACGCCATCAACAAGATCTTCACGCTGGGGAACGCAGAGTTCCCTGTCAGCTGGGAGAACGAGATCAAGCTGTGGACGTTCCTGGAGACGAGAGCTGCGCTGCTCCTCAAGACGTACAAAACCACATCAGAGgaggaCAGGTCCATGCTGCAGAAACCCGACCTCTCTCCACACTCGCGCATGGCCATAAAGCTGCGTCTGGCTGAGAAGGAGATCCTGGAGCGCGCCGAGGCCAGCGGCCGTGCCAAGCGCCTGCACTTCCAGAAGCAGCTGGATGACGGCGCTCCTCTGCCCGTGTATGAGGAGAGCGACATCGCGCTGCTGGAGAACGCCGACGCCAAGCTGCCCATCGTCCTGCACCAGCTAGAGGAGGAACAAGAGGAAGAAGAGCTGAAGATGTCGCTTCTTAACGGTGAACGAAAGGAGAAAGAGATACAGAAGGAGACCGGAGGAGAGAAAGCAGAGTCGAGCGCGCAAAGAACTGAGGATACAGGCAAAGATCAGGAATAAGTTCGACACAATCACGGATTCCTgctccttatttattttttgttttaagtgACTGAAGAATAGAAGTGAAAGCAATCGAAACTAAAACAGCAGTCTGTGTTacttacagcttttttttttgttttttttttttaatatagatgTGACGATTTCAGATGATGTTCTGCTGTTCCGTCCCACGTTTTAGTTTTAACAGTGCCACactggtttatatatatatatttttttgtttatttgaagcAGGTGGCTCCTCCCACTCAGGAGGAAAAAGACttggaaaactgaaaactgtaTGTAATGGAACGTCATAATCGGACCTGTGGATCTGATGTACAGATCTGGAGTTCAGTTTGTTCAGGATTCAGTATGACCtggttaactttttttttttttttttttttttttgcgtgttTTTGTTGCtcctacagtttttttttttaaaaaacatacacagtgtTTCCCTTTACCTGAAATGTAGCATGTTTAGTGCTTGGAGCAATGAGGCTAGCTTGTATCTTATGAGGTTAGCACTGCGCAGTATACTCGCGTTATGTTTGGGGGGTGGGGTTAGTAATGTTTACGGCTGCACGCAATGTGAAATGCaacagcagagaaaacacaTGCTGTAGATTATTACGAAACTCTTTAATAACAAGTTCAAACTCCATCTTTAAGCTACTTAAtcttgtttaaataaataaattagtttaaaGTTTCGtcaaattgaactgaaattttTATGGTTTAAGTGTATGGCAAAGTGGTCGATAAAACTCCACCCCAATCTGTGGGAGGCGGAGCCTAATCTCTAGTCATTTGTGTGCAGAATGATACCAAAAACGTTATTGTGGCTATCTAAGATGGCTGCTCCATTACATTAAGCTACGAATAAGTTCACAGTAGCTAGTGTGCGTCACTCCTAGCGAGTGTCAGTGATCTGGCCAGCTTTTAtcatcaaacaaatcaaaaataggatcacacactctctcaatacattaaaaatggtGATGCATTTTACTGCACTCGTTATTTTACTGAATAACCTGTTAATtgacacacatttacaattgccttctttttttttttttttttgttggctCAGAAGATTGACAGCTTCGCAAATTCATGGGTCAGGGTTCCCCTAGATAAAGTCTATGTACACTGTGTGAAACTAACCGCAAACACGCTTGCACGTTGTGCGTCTTTtccttgtgtatttttttccgCATTTTTCCCGACCATAGATTGATGGCTGAAAAGGCAGAAAAGcgtatttttaaatttgtcaaTAGAGCTAAACTGTATTGTGTCGTAACTTGTATTGCTTGTTTGCGACATTAGCCTTGCAGCGCAAGTTCAAAACTAATGACTCAAACGTCAAACACTAAACATGTCTTCGCTAATCATCTACATTTGGTATAAGTGAAAATTGTgtacgtttttcttttttcccatgaAACTATTACTTTACGCTTGTTCTGCTAATGTGTTTGCTAGACaatcgtttttctttttttacgtTCTGGATCCTGCTTTGCACCTGGATTAATCATATTACGCAAGGAGTCCTGGTCTTTTCAGCAGGACATTTATCCCAAAAAAGGAAGAAGCTGAGGATGTTTTAAGTTTGATTGCACTTCGGGAACAGTCACTATATTTTTCAAAAGTGGTCTATTTTTCAGTTTGGATTGTTTGACATACTGTGATTGAACCTTCCGAAGGTTAGAAGCTTGAGATTACTTTAGAATTACGGACAAGTCGTCTTGCTATGAATGTAGTTTGAAATGCTTCGTCATATTGAATAGAtctattcattaataatttccTCGTGACGGCTGTCTCGGTTGCTGAGAACGATAACTTCTTCCACGTTTATAATGTTGTTATCGGTTTGTTTACATCAGAAGCCAAACTCATCACATCTCTAATGTCTGTGGTTCTCTTTACGCCTTAAAACAGTTTCCTGTGCAGGATATCTGCAATCACAACACTTACAGGTTCCAAAACTAGGGTTTTTCTTATGGTTGTtctcattaataattttatatagtgCATCTCATGCATTTAAAACGCAGCTCAAATAGTGCTTTACGATAAATCTATAGAACAAATAgatacataattaaataaatatactgtactCAAAGTGAAACTGATTTTGTAAATTAGaggtaaaaagaaaatgctaaCAACTGTTTTGAAATAGTTGTGAAAGGACAAGGTTTGAGCTGCTTTTTAAACGATACAGCTGGAGCCTGATGAGTATTGATGGATCACAAATTCCAgatctttggaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaagtctgcatcactgtttttcactttggGAAAGTTGAGTAAAGCGTGATTTGGATCACAGCCTGTCAGACATGCAGAGATGTATGGATAAGGTaagctttaaaaacaataaaagactTACTGAAACCTGA

Function

GO:

id name namespace
GO:0010452 histone H3-K36 methylation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0018023 peptidyl-lysine trimethylation biological_process
GO:0018026 peptidyl-lysine monomethylation biological_process
GO:0018027 peptidyl-lysine dimethylation biological_process
GO:0005634 nucleus cellular_component
GO:0003713 transcription coactivator activity molecular_function
GO:0046975 histone methyltransferase activity (H3-K36 specific) molecular_function

KEGG:

id description
K19199 SETD3; protein-histidine N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203802 lncRNA downstream 45850 26772132 ~ 26773050 (-) True G172196
TU203600 lncRNA downstream 223417 26595281 ~ 26595483 (-) True G172016
TU203440 lncRNA downstream 760391 26058245 ~ 26058509 (-) True G171874
TU203430 lncRNA downstream 840873 25977796 ~ 25978027 (-) True G171864
TU203311 lncRNA downstream 1039934 25773504 ~ 25778966 (-) True G171755
TU203819 lncRNA upstream 25352 26870347 ~ 26870619 (-) True G172211
TU203821 lncRNA upstream 49773 26894768 ~ 26959616 (-) True G172212
XR_004578992.1 lncRNA upstream 71823 26916818 ~ 26920537 (-) False LOC113534208
XR_003403481.2 lncRNA upstream 72091 26917086 ~ 26920537 (-) True LOC113534208
TU203838 lncRNA upstream 133471 26978466 ~ 27052034 (-) True G172225
XM_026926840.2 mRNA downstream 23981 26741374 ~ 26794919 (-) False bcl11ba
XM_026926839.2 mRNA downstream 23981 26741374 ~ 26794919 (-) True bcl11ba
XM_034308046.1 mRNA downstream 414911 26363066 ~ 26403989 (-) True si:dkey-288a3.2
XM_034308237.1 mRNA downstream 497275 26312809 ~ 26321625 (-) True LOC113534079
XM_026926682.2 mRNA downstream 1138159 25679314 ~ 25680741 (-) True cx52.7
XM_026926508.2 mRNA upstream 1851 26846846 ~ 26898308 (-) True ccdc85ca
XM_026926758.2 mRNA upstream 84666 26929661 ~ 26955838 (-) True ism2a
XM_034308244.1 mRNA upstream 114828 26959823 ~ 26989620 (-) True sptlc2a
XM_026926575.2 mRNA upstream 153436 26998431 ~ 27003962 (-) True alkbh1
XM_026925974.2 mRNA upstream 637886 27482881 ~ 27489113 (-) True dio2
TU203284 other downstream 1236373 25578939 ~ 25582527 (-) True G171734
TU203074 other downstream 1559538 25258839 ~ 25259362 (-) True G171569
TU203072 other downstream 1559691 25258839 ~ 25259209 (-) False G171569
TU202681 other downstream 2011805 24801083 ~ 24807095 (-) False G171256
TU201673 other downstream 3955133 22855494 ~ 22863767 (-) True G170435
TU204658 other upstream 1054496 27899491 ~ 27910890 (-) True si:ch73-204p21.2
TU204659 other upstream 1054496 27899491 ~ 27910890 (-) False si:ch73-204p21.2
TU204662 other upstream 1067242 27912237 ~ 27912544 (-) True G172919
TU205159 other upstream 1991897 28836892 ~ 29050026 (-) True G173287
XR_004578919.1 other upstream 2055909 28900904 ~ 28908552 (-) False stmn4l

Expression Profile