RNA id: XM_034308299.1


Basic Information

Item Value
RNA id XM_034308299.1
length 1176
RNA type mRNA
GC content 0.52
exon number 8
gene id fam149b1
representative False

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 29104328 ~ 29114239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGACAGGTTTTATTTCTGGGAAATCTAAACGCTGTAATGATGATGAATCATTTTGTGATCCGTTTTCCTCCAGATGAGGAGAAGAGTTCAGCATCTCTCAGTCCAGCACATCATCAATCCCATAATCCCTCAGGGCTGAAGTCCAGCACTTCCGGCACTCTGCCACGCCTCGGCCCCCAGCCGCAGCACACTCCTAACGCCTTGCACACTCCGAGCACAAAGTCGAGGGGCTCAAAGTCGAGATGGAAATCCAAAAAGCAGAGAAAGCCATCTACCCCCAGTCGAGTGTGTGCAGGATCAGCAGCAGTGCAGCATCACACTCTGAATGAGCTGATTGTGGTTCATGGTCTTCCTCTGCGGCAGCGACACACCACTGCCCCGGAGCACACCACACagtatGACTCAGAGGAGAGGATGAGCCTCTCTAAGCCCCGCCCTCGCCGCTCTCTGGAACAAAGCCCTTCCCCTTTACCCCGCCCTCCTCCATCATCACGGAGACGACCCCTCCCTCCTCGCACGCTCCTCCCACTGACCCAGTCCAGCACTGCAGGAAACATGGAGGACATTATCAGAGGGACACGACTagccCCGGCTGGCGATCGCCTCTCCTCTTCTGCGATGACTCTCAGCAGGAACACACTCCTCCCCCCCATTGGCACTGCAgacaaagaacacacacacactggacatcACACACGCCTttctcagcGTCACAGAGCTCCTTCCAGTCATGCTCATAGTGCTGTAGCAGATGAAGCCGGCAGCCTTCTGGCCTTTTCCAGacccaacaccacacacaccttcaggtCAGATACACCTCATCGCCGCTCTTTCACTGTTCTGGACAGCAGCGGGTCGGCGAGACCAGGCAGAGCCTCTGTGggcacagctctgcttGTTCCAGTGTCTCTGCAGTCACACAGTAGAGGAGGCCTGATGACTCGCAGCAACAGACCAGGaccttaacacacacagacacacacagacacacacacacacacacacaggcacacacacacacacacacacacacacacacacacacacacagacacacacacacacagagcagtttTCAGCAGATCTTTTTTACCATCTTTATGTAATGTTATTATTGTtcggattattattattattattattattattattattgttgtagttgtttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205036 lncRNA upstream 24194 29079237 ~ 29080134 (+) True G173215
TU205052 lncRNA upstream 31239 29071532 ~ 29073089 (+) False G173221
XR_004578930.1 lncRNA upstream 50118 29053136 ~ 29054210 (+) True LOC117598233
TU205028 lncRNA upstream 110858 28990797 ~ 28993470 (+) True G173209
TU205026 lncRNA upstream 114622 28989119 ~ 28989706 (+) True G173208
TU205062 lncRNA downstream 3085 29117324 ~ 29119753 (+) True G173228
TU205050 lncRNA downstream 54527 29168766 ~ 29173464 (+) True LOC117598323
XR_004578993.1 lncRNA downstream 54595 29168834 ~ 29173095 (+) False LOC117598323
TU205073 lncRNA downstream 55635 29169874 ~ 29170599 (+) True G173237
TU205268 lncRNA downstream 106814 29221053 ~ 29221649 (+) True G173371
XM_034308249.1 mRNA upstream 4964 29093464 ~ 29099364 (+) True nrde2
XM_034308216.1 mRNA upstream 17147 29075602 ~ 29087181 (+) True ttc7b
XM_034308217.1 mRNA upstream 17509 29076727 ~ 29086819 (+) False ttc7b
XM_034308218.1 mRNA upstream 17509 29077434 ~ 29086819 (+) False ttc7b
XM_034308248.1 mRNA upstream 36991 29054233 ~ 29067337 (+) True kif28
XM_034307891.1 mRNA downstream 36398 29150637 ~ 29157548 (+) False LOC117598241
XM_034307890.1 mRNA downstream 36956 29151195 ~ 29157548 (+) False LOC117598241
XM_034307894.1 mRNA downstream 36956 29151195 ~ 29157548 (+) False LOC117598241
XM_034307892.1 mRNA downstream 39556 29153795 ~ 29157548 (+) True LOC117598241
XM_034307893.1 mRNA downstream 39556 29153795 ~ 29157548 (+) False LOC117598241
TU205054 other upstream 31239 29069720 ~ 29073089 (+) True G173221
trnak-uuu_7 other upstream 1379049 27725207 ~ 27725279 (+) True trnak-uuu_7
XR_003403449.2 other upstream 1638679 27156343 ~ 27465649 (+) False nrxn3a

Expression Profile