RNA id: XM_034308304.1


Basic Information

Item Value
RNA id XM_034308304.1
length 6098
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC113529967
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20738919 ~ 20813729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTTCAATCGCCAAGGGGATCCTTCTTCCCAAGCAATCAACTACCAAAGCCAAGAGCCTTGGAATGGCTGTATTTttaaagtaagtgtgtgattAATTAAATGGCTCCCATAATGGagggcacacacacagtgctctgTCTGCACAAACGAATTGAGGAGTTTATTTACATCAGCCCATACTTCCCCACTAGGGGAGTGCGAGGCTTTACACGCAGTGGCCGCACCTCTCATCACTGCCAGCCCCTGTACACCAATCAGCATGACCAGAAGGCTGAAGATCCTGCAATGCCAAAACAAAGAAGTCAGTCTTACAAGCCAGCAAGTGAAGGCTTGCAGTCTTGTGAAGCAATAAATGATTTAGCTGGGCTTCACTGGCTGTCTGCAGAACATTGCCAGTTGCTTGTGGATCTCCTGTCTCTGTGTGGTGACTGTGCATCAAGATTCAGAATGGGCAACCAGGATGGCAAGCTACAGGCTCAATTTGAAGGACATGAAAAACATCTTGTTCAAGGTGTTAACAGCAGCAACCTTCAACATACCCTTTCTTTGTCTCCAGATCATAAGAGATCAGCTTCTCGGGTTAGGAAGATCAAGAAACTAGGTAGCAAGAAGATGGACAGTGCTGAGGAGTTGTTGCAGACTAAgttgaaaaagaaagtacagaGCAACACAACTTCAGAATTTTTGAAAACTCATCTGGATGTAGACTTGATTCAGGCAACTGAAAACCAAAAGTTACCTGGCACCCCTGCTTCTTTGCATATACCACATACACCTGGCTCAGACTCCTATGCCAGTGTCAGCAGCGAACCACTTCTCCCAATGGAAGAAGCCTTTCAGACGTGTCAGGAAGCCTGGGAGTTCATGGAGGACTCACGTCTGTTTGAGTCAGAGATAGACCTCTGCACTGAATTCACTGAGTTTGAGGACCAGTTCTGTCTGAGTTATGGAGCATTTTCCTGTAGTCTTACGGAAGCGAGGCAGTACCATACACATCAGGAGCAAATGACTAATGGAAATAACATTGTTTCAAGTGGAAAAATAAGTTCTGCTGGGAAATACAATTTGCAAAATAATTCTGGAGGTAAGACTGTAGCACCGCTGTATGATGACATGAACAGGAGAGACATAGTTGTTGAAGTGGTGGCTGAAACGATGGAATTAACCAATTCCAACCTTGGGAGCAAAGAGAATTCCTCTGATGTCATTGAAGTAGGGCCTCATACCACTAATGATAGCTCTGCAATGGGACAAAACACCTGCCAACATTTGAGACAAGAAAAGCTGAAAGTCCAGAACATTACTCAGGAGAACAATGTGGAGCTAAAGGTTAGAGATAGGTCTTCTGAGGCAATGCCATTTCCCCTCATAGAATCTCAAAATGGAACTTCCAACCTTAGGCCCAGGACTAAAAGCCCTATATCTCCTTCCCTTTCTGGGGTTTTTAATGTGTCCTACTCTCCATCCAACAGCCTCCAGAGTATGTCCCCCATCCTATCACCACTGTCATCCAAGCTGTCCAGCCCCCAACTGAACCACCGCATTGTATTGCTGCCCAAAGAAGATGGAGGTAAGGACAAAGATCGAGACAGGTGGTTTCATGAAAAAGCTGGGTCATGGTTAGAAGATGGGGACCAGCCCAAAGACCCAACAGAGGCCACAGACAAAAATGGAAACCATAGAACTATCACTAGGCTGGACCTGAACCTCAGCCAACAGGGATCTGGAAACTCTACATGGATCAATGATGGTACAACCTCTTCCAAAATTACAGAAGAGTCCTTGAGACAAGATGAAATGTGGTTGCtggatggtgatggtgatggtgatgactCCATTTCCCATAAGCCCCTGTGTCGAGCCACTAGACCTGATCACCTTGAATTTTTGAGGATCACACCACCAGAGGATGATATCATTAGTGAAACACTGTATCATCCAAAACATGAGCCCGGGACTGAGGTCTCCTCTCCAGCAGACAGTGAGGACAGGACGCCTGGGAGACTTCAAGCAATATGGCCACCACCCAAGCCTaaagatgaagaggaaaaaGTGGGACTCCGTTACACTGAAGCAGAGCACCAGGCTGCTCTTCTGCAACTGAAGAGAGAATGTAAAGAGGAAGTGGAAAAACTGCAGGCTGATTTCGAGCTCAAGATCTTCCACCTGCGTGGAGAGCATGCAGTGGCTGTTTCCCGACTGCAAGAAACCATTGCTGAAATTCAGCAGGAGCGAGGCTATTCACAGGGCAAGACAAAAGTGCGCGATGCCTGTGTGTCCACTGAAGACGACGCGGTCCTCAAAACCTATCGCAATGTTTGCATCCAGACTGACCGGGAAACTTTTATTAAGACGCCAGAAAGTGAGAGTGCCAAGCCTGTTCAAAGTCTGCCCCGAAAACTCGACCTTGATTCCATCACCCAGAATCTAGGCATGGTACCTGGagctccacctccaccacctcccCCTCTGCCTGGCCAACCGCGTGTCTCACCAGCTTCAggtccaccaccaccaccaccgctACCTGGATCAGTGCCACCACCCCCTCCACCTCCTTTACCTGGAGCCGGAGCTgcaccacctccacctccacccctCCCTGGAGTCGGgcctcctccccctcctcctccacctggtATGCCTGGAGTTCCGCCCCCACCTCCACCCATTCCTGGGTTTGGCCCCCCACCTCCTCTGCCCACCTTTGGGTTGGCAGTGGAAAAACCTCCACGCAAACCAGCAGTAGAACCAACATGTCCCATGAAGCCACTCTACTGGACTCGGATTCAGATTCAAGACGACAATAATAACACGCTGTGGGGTTGTCTGGAAGAGCCAGATATCGTTGACACGAAGGAGTTTGAAGAGCTTTTCTCCAAAGCCACACTACAGCCAAAGAAGAAGCCTCTTTCCGACACATATGAGGAGAAGCCCAAATCCAAGAAGATAATCAAGTTATTAGATGGGAAACGTTCTCAAGCAGTGGGGATCCTAATATCCAGCCTTCATCTGGAGATGAAGGACATTCAGCAAGCTGTTCTTACTGTGGACAACTCTATAGTGGATTTGGAGACGATTGAGGCTTTATATGAGAATAGAGCGCAGAATGATGAACTGGAGAAGATCAAAAAACATTACGAGAACTCAAAAGAGGATGAAGTCAAACTTTTGGATAAGCCTGAACAattccTGTATGAACTGGCCCAGATTCCGGATTTTGCTGGCCGAGCTCACTGCATCATATTCCAGGCTGTGTTTCTAGACTCCATAACGTCCATCCATGGTAAAGTGGAGATCATCTCCACAGTGTGTAAGGGTCTCTTGGAAAGCAGCAGTGTTAAAGAAGTGATAGGTCTTGTCCTGGCCTTTGGGAACTATATGAATGGCGGGAACAGGACCAGAGGGCAGGCTGACGGCTTTGGCTTAGAAATTCTTCCCAAGCTGAAGGATGTCAAGAGCAGGGACAATCGCATCAGTCTGGTGGATTATGTGGTGTCATACTACCTACGAAACCTAGATAAGGATGCAGGGACGGATAAGAGTATTTTCCCACTGCCCGAGCCTCAGGATTTCTTCCTCGCCGCTCAAGTCAAGTTTGATGACATCTTGAAAGACATGCGAAAGCTAAAGAGGGATCTCACAGCCTGTGAAAAAGACGTACAAAATGTGTGTGCCAACTCCTCAGAGGAACACCTCCATCCATTCAAAGACAAAATGGACACTTTTCTCACCACAGCAAAAGCAAAGTATGCGGCTGAAGATGACCGCCTCAACGCTGCCCAGAAAAGCTTCCAGAAAATGGTCACCTACTTTGGGGTCAAGCCCAAATCTGGAGAGAAGGAGGTTTCACCTGACTATGTTTTCTTACTATGGTTTGAGTTCTGCAATGATTTCAAGAGCGTATGGAAACGTGAGAGTAAGAACATCTCCCAGGAAAGacttAAGGAAGCTCAGCTGAATGTTCAAAAGATCACAGCTGAGAAGAAAGTGGAGACAAAAAAGGTCAATGCCAACAGTCTgAAGGAGAGGCTGAGGCAGAAGGAGGCGAATGTGTCCTCCAGCTGAAGATAAAAGAAGGTACAGACTGATAAAGCATCATTTTTACCACCTTTAAGAGGGACTGTTTGCACAGGAGCGTGGCATTCTGGCATTCATGATATTCTGCTACACTGTACTTTAACATAGTGGCCACAACAATAGCAGAGATctgtgttttcctctttttgtgGACATGCAAGTGAAATCAATGCAATGCAAGTTGTGGGACTCATCAGGAAATGacccatctccatctccatctccacatGAACGACAGAGACGTCTTCAGTGTTGATTCCCGACTTCTGTCTCTTGTAAAAGTGCTTCTGTTTGGGAAAGGCTCCATCATTCTAATTATAGCAAATTTCAGCTTCATTTAAAGCTTTTACAAAGTAAATctccaaaaaaaagtaaagataTTCAGGTGAGTTGTCTGCATTCACTCAAAAAAACGGGCATTGATAAAACAAACAGACCTTTAACAGCCATCTTGTAAGGCTTAATGAGTTAaacgtgaagagagagagagagagagagagagagagagagagagagagctactGGTTTGCCTATTAAGGCTTTTTATAAACTTCTAGGTCATAAGgctttttcctccttttatttattttctatagaAAATATACACTGGTGCAGACAGAATGGCAGACTGCCAGATCTCGTCAGTCAGTTAAGACCTCACTTACACACCTCAAGTTACCAATAAAAACCCGAGTTAGAGGAGAGATAAAACTCCTGCATCAGTCAGAGTGGTTTTAAAGTTTTCATCTCATCTTCATGAGTAATGTGGTTTTAACTGTACAACTACCTACTCAGTCTCATAGGTGTAGGTTTATCGCAGTCACGTGCACTTTCCTGCAACAGCAGCCCCTTCCTTTTTGACCAGATTGTGTCTTTTACCTCCTTTGCAATGTCTCATGCACCTCAGTTGTAGTTTCTATGCAATCTCCTTTCTGAACAGCACTTGTGAGAGCCACAGTGTCCATGTACAatagaatatatttattttcatagaaTTTTGCTGAAGCTAATATTCTTTAAATGATGTGTTGAAAAGTGAACAAATTAGTGAGCCTGTCCTGAAGAcagatatacacatatatatttataacttcTAATTCTTTTGTGCCTCAAGTAAATTACTCATTACCAAATTACTCATGATTTCATCTTCTTGCGTAGtctgtaataataaattaagtGTCTTGGACAAGAGACCGGGTCGAATGGACATAAATGGTCATTTCTTAATAAGCTTACAGTTTGTTCCTATTTATTCATTCCAaatatgtggtgtgtgtagcAGCATTGTCTAAACGTCAGGAATCATGGCCTTCTTCTCTTTGCTGTTTTTgtcctgtctgtttttctgttccCATAAACTTCACTCAATGCTATTTGTTAAGTTGTTCTTTCAGCAGTCTGTTCATATGCATAAAACTGAACCCGGTGACCTCGGGGAAAATCAGGACATGACCACCGTTAGCTCTCACGTACCAAATGTTTCCTCTCACTTCACACCATCCAACACCAAAGTCATGCATTAAATCTGAAACATATTTGTGGCACtcatgtttttttgcatttgctgtATATTATTTCAGGGGGGAAATGATTCTGAACAATGGGAAATGGGAAATGTTTCTCACTAAATGCCACTTTATATTGTCTGATATATTTTAAGTACATTACACACGTGGCATAAAGGCACTACTACGAGAATTAAGGCCCTACAATGCAAGCATATTTAAGTATATTTGTAACATCTTTTAAAGCCACATTACAGCCTGTAAGTAAGTGACAAGAAATGCTTCTTTTTCAGGAAAATATGttctgtgttattttctttctaTCCATGAAAACAACAGTGATTGTAGTCCATGGACTATTTGTGTTTCAGATTAATATAAGCTGCATacaattataaacattttacatcTAGTAAAATCCAGGCTGGACAAGTAAAGATTCACTGCCCAGAAAGAGActcaaataaatttatttcactttttattaatacattaactcaACAGGCCT

Function

GO: NA

KEGG:

id description
K10367 FMN1; formin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199993 lncRNA upstream 165641 20573032 ~ 20573278 (+) True G168940
TU199991 lncRNA upstream 166356 20569876 ~ 20572563 (+) True G168938
TU199853 lncRNA upstream 285114 20444244 ~ 20453805 (+) False fsip1
TU199855 lncRNA upstream 294986 20443790 ~ 20443933 (+) False fsip1
TU199869 lncRNA upstream 296287 20442375 ~ 20442632 (+) True G168850
TU200101 lncRNA downstream 19117 20832846 ~ 20842174 (+) False G169046
TU200106 lncRNA downstream 19117 20832846 ~ 20842174 (+) False G169046
TU200109 lncRNA downstream 19117 20832846 ~ 20842174 (+) True G169046
XR_004579003.1 lncRNA downstream 291214 21104943 ~ 21107399 (+) True LOC117598333
TU200384 lncRNA downstream 368128 21181857 ~ 21183778 (+) True G169287
XM_026919861.2 mRNA upstream 194407 20540898 ~ 20544512 (+) True zgc:194887
XM_026919862.2 mRNA upstream 198621 20535056 ~ 20540298 (+) True LOC113530108
XM_034307746.1 mRNA upstream 212065 20521595 ~ 20526854 (+) True LOC113530103
XM_034307747.1 mRNA upstream 294447 20400002 ~ 20444472 (+) False fsip1
XM_026918989.2 mRNA downstream 30069 20843798 ~ 20896411 (+) False eif2ak4
XM_034307769.1 mRNA downstream 31374 20845103 ~ 20880665 (+) False eif2ak4
XM_026918986.2 mRNA downstream 31375 20845104 ~ 20896411 (+) False eif2ak4
XM_026918987.2 mRNA downstream 31375 20845104 ~ 20896411 (+) False eif2ak4
XM_026918988.2 mRNA downstream 31375 20845104 ~ 20895605 (+) True eif2ak4
XR_004578912.1 other upstream 207697 20528519 ~ 20531222 (+) False LOC113530103
XR_004578913.1 other upstream 207697 20528525 ~ 20531222 (+) False LOC113530103
XR_004578914.1 other upstream 207697 20528527 ~ 20531222 (+) False LOC113530103
XR_004578905.1 other upstream 210968 20521595 ~ 20527951 (+) False LOC113530103
TU200725 other downstream 856178 21669907 ~ 21674461 (+) True G169577
TU200872 other downstream 1005552 21819281 ~ 21820059 (+) True G169692
XR_004578924.1 other downstream 2048078 22861807 ~ 23022395 (+) False LOC113533992
XR_004578925.1 other downstream 2048081 22861810 ~ 23022395 (+) False LOC113533992
TU201530 other downstream 2048298 22862027 ~ 22890770 (+) True LOC113533992

Expression Profile