RNA id: XM_034308327.1


Basic Information

Item Value
RNA id XM_034308327.1
length 3635
RNA type mRNA
GC content 0.49
exon number 18
gene id kctd3
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 23721794 ~ 23735252 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGgactctctgattggctgttctgCTCGACGTCGACGTCGGCTTTGGCTTGTTCTAGCGCTCTGTTTGCGGCGAACGTAAAACAAACgcgaaagaaaaaacagaaagagcgacttttttgtgtttggtgtggtttttttctttcttcatttgttCTGTTATATCGATAAGGCAGTGATATTCTTGAGGAACATGGCGGACACGGTGTGTTAAGACTCCACACACGGCCCTGGGCTGAGGCGTGATGTTTTCAGAGAGTTGCTGGGAAGAGCACGCGCAGCAGGAGTGGAACGGGATCAAGAGCgcgagctgctgctgctgctgctgctgctgaacgCTGCTCGGTGGCACGATGGCTGGAATGTGTAACGGCGCCACATCTGGGCCGGGTGACATCATCCAGCTGAACGTCGGCGGAACACGatttAGCACCTCAAGACAGACTCTTATGTGGATTCCAGACTCTTTCTTCTCAAGTTTACTCAGTGGGAGAATATCAACACTAAGGGATGAAACTGGAGCTATATTTATTGACAGGGACCCAACCGCATTTGTGCCCATTTTAAACTTCCTTCGTACTAAAGAGTTAGACTTAAGAGGGGTCAGCATAAGCATTCTGCGCCATGAAGCTGAGTTTTATGGGATTACACCTTTAGTTCGACGTTTGCTGCTGTGTGAGGAGCTAGAGAGATCATCATGCGGAAGTGTGCTTTTTCATGGCTACCTCCCACCACCAGctatCCCAGCTCGCAAAGCTGCCAGTGGGCAGAGTGCAACTGCTGGAGTCCAGGAGGAGTACCCATGCCCCAGTGGAGCGGAGGGGGGCTTCTCTCGCTCATGCTCACACACCGCTTTGCCTGGGCCTAACGGATAAATTTCAGCTGGATCGGCAGTTGATCCCAGGAAGGTGCTCATCGTTGCTGGTCATCATAACTGGATAGTAGCTGCCTATGCTCATTTCGTCATTTGCTACAGGATAAAGGAATCTTCAGGATGGCAGCAGGTCTTCTCAAGTCCTTACCTAGACTGGGCCATTGAGCGTGTCGCGCTAAATGCGAAAGTAGTAGGTGGTCCCCATGGTGACAAAGACAAGATGGTTGCGGTGTCATCGGAGAGCAGGATCATCTTGTGGAGTATCCAGGATGGAGGAAGTGGCAATGAGATAGGTGTGTTCAGTCTTGGCGTGCCTGTTGATTCTCTTTTCTTCATTGGGAGTCAGCTGGTTGCCACCAGTCACACTGGGAAGGTTGGTGTTTGGAACGCAGTGACGCAGCACTGGCAAGTGCAGGATGTTGTGCCCATCACCAGCTGTGACACTGCCGgatcctttcttcttcttggaTGCAATAATGGCTCCATTTACTACATTGACATGCAGAAGTTCCCACTGAGAATGAAGGACAATGACCTCCTGGTGACTGAGCTCTACCATGACCCCTCAAATGATGCCATCACAGCCCTCAGTGTCTACTTAACACCCAAAACCAGTGTGAGCGGAAACTGGATTGAGATTGCGTATGGCACTAGTTCAGGTGCGGTGCGTGTGATAGTGCAGCATCCAGAGACGGTTGGATCCGGGCCTCAACTGTTTCAGACGTTCACAGTGCACCGCAGCCCTGTCACTAAGATCATGCTGTCTGAGAAACACCTTGTGTCAGtgtgtgcagACAATAACCACGTAAGGACGTGGACAGTGACCCGCTTTAGAGGAATGATCTCCACTCAGCCAGGATCCACGCCACTGGCTTCCTTCAAGATCATCTCGCTGGAGGAGACGGAGAGCCACAGCAGCTACTCCTCTGGCAATGATATAGGTCCatttggagagagagatgaccaGCAAGTATTCATTCAGAAAGTCATTCCTATAACCAACAAACTCTTTGTGCGTCTCTCGTCCACTGGAAAGAGGATCTGTGAGGTGCAGGCAGTGGACGGCACCACCATCACGTGTTTCACAGTGCGCGAGTGTGAGGGCTCCAGTCGTATGGGCTCCCGGCCACGTCGTTACCTCTTCACTGGCCATGCGAACGGCAGCATCCAGATGTGGGATCTAACCACGGCCATGGACACAGCGAACAAGAGCGATAGCAAAAGCAAACGTGATGCTGTGGGGGGGCCCACAGAGGAGGAGCTTCTAAAGTTGCTTGATCAATGTGATCTGAGTACATCACGCTGTGCGACACCCAACATTAGTCCCGCCCCTTCAGTACTGCACCACAGCCGACTCCGAGAGTCCTGCTCCAGTCTCCAGCTGCAGGCCCAAGAACTCTTGGCAGAGACTGCCACCTATGGCGCTGTACGTCCATATCGAGAGAGCCCACTGCTGGCACGTGCCCGTCGCACAGAGAGCTTCAGCAGCTATCCAGACTTCCACACCCTCAACCTGGCCAAAGTCCTGAGGGAACACGGCGGGCATTGCAGCGGCACTGACGACGACAGCAatggtgacactggagacaagAGGAGCTCAGAGAGTCCAGTGAGCACTGCAGACAGCCCCCGAGACCCTCGCTGCAGGGCACACTCCTCTGATGAAGGTACCTCTGAGTGCAGAACGGAGGGTAGGAGGAGAGGAGCGCTCGATGGGAACTTCCTGGGCCGGAAGAAGGCACCTCCGGTCCCGCAGctgagctctgtgtctgtggggaGTGAGGCAGGAGGCAGTGACTCATCCAGCACAGCCTCGCCCTCTCCAACTAAAGCGTCCACTTCCCCACGGCACCGCAGGGGACTAGACATGAGTGAGTGACGCTCTGAAAGCTAAAACAGCATATATTTCCTGAAGCAGTATTACCATATCCATAAGCATAAACATATCCCTGAAGGAGTGTCTGGTGAGAAAACTATAGATAGGGGTGTATAAAGCAGCAAGTTactaaatgaatatttaatatatactaCAAATATCTTACCCAGTTCTGAAGCACTTTAGTTTCAGTTAATATTCTAATCCCTGTAAAGGTTAAATGCTACAGGTCAGAACAGAAACGACTGGAGGCAAAAGTAACGTGTCACTACAGTGAACTAACTTCTTTTCTGTAAAGCAGTCgcactttattttgctcgtTTCACATTTCAAGAAGGGAATAATCTCAGACTTTCGCAGATGcctttttcatttgaaatgttaTATTGTgagcttattattttttttgatttttggtcatttttgggTGGATAGTTCACAAAGAGGGATCATGTTCAGTGAAACAGGTTCATTTAGTACCAAACCCtgttttacaatgttttacttttaTAGACGTGTAGGCACATTATTAGATCATGCAAGCACAAAGCAagtcagttcagttcagtttaagTCAGAAAACTAGGCTGGTGCAGAAATACTGCTGGTAAGCTGCCAGGTTAGGGATATAGAGCTCTAAGGGGTTGggtatattattatatgcttAATATTATATGCTTAGTATTAATTCTGCTACAACATATTTACTCATGaggtttattttttactctGGTTTGTGGATAAAAACATTTCCTCAGCCAGTTTTACAGACGGTCTAAAGACGTGCTTCGTCTCTTTTATGCAATTGGTACTCATTAAATCGGAATCTGTTAAAGTATATATGTATGAATAACATTATATGCCTAtcttgttaaaaagaaaaagaa

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21915 KCTD3; BTB/POZ domain-containing protein KCTD3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202118 lncRNA downstream 3025 23718545 ~ 23718769 (-) True G170795
TU202102 lncRNA downstream 17283 23704296 ~ 23704511 (-) True G170782
XR_004578936.1 lncRNA downstream 492638 23201694 ~ 23229156 (-) True LOC117598237
TU201842 lncRNA downstream 571710 23148743 ~ 23150084 (-) False greb1
TU201819 lncRNA downstream 615849 23105235 ~ 23105945 (-) True G170558
TU202129 lncRNA upstream 41303 23776555 ~ 23777311 (-) True G170805
TU202111 lncRNA upstream 42727 23777979 ~ 23779234 (-) True G170788
TU202110 lncRNA upstream 43017 23778269 ~ 23779234 (-) False G170788
TU202188 lncRNA upstream 158872 23894124 ~ 23894355 (-) True G170852
TU202202 lncRNA upstream 183173 23918425 ~ 23919023 (-) True G170866
XM_034307870.1 mRNA downstream 456729 23234593 ~ 23265065 (-) False spata17
XM_026926813.2 mRNA downstream 456729 23234999 ~ 23265065 (-) True spata17
XM_026926814.2 mRNA downstream 456729 23235192 ~ 23265065 (-) False spata17
XM_026926020.2 mRNA downstream 542283 23148881 ~ 23179511 (-) True greb1
XM_026926404.2 mRNA downstream 574056 23113368 ~ 23147738 (-) False lpin1
XM_026926007.2 mRNA upstream 4767 23740019 ~ 23760260 (-) True ptpreb
XM_026926008.2 mRNA upstream 4767 23740019 ~ 23751412 (-) False ptpreb
XM_026926704.2 mRNA upstream 44763 23780015 ~ 23792144 (-) True LOC113534104
XM_026926409.2 mRNA upstream 91796 23827048 ~ 23836772 (-) True soul3
XM_026926410.2 mRNA upstream 94593 23829845 ~ 23836772 (-) False soul3
TU201673 other downstream 858027 22855494 ~ 22863767 (-) True G170435
TU201211 other downstream 1605918 22115565 ~ 22115876 (-) True G170023
TU200304 other downstream 2904578 20814561 ~ 20817216 (-) False grem1b
XR_003403127.1 other downstream 2988742 20732930 ~ 20733052 (-) True LOC113530231
TU200198 other downstream 3155995 20564929 ~ 20565799 (-) True G169119
TU202681 other upstream 1065831 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 1523587 25258839 ~ 25259209 (-) False G171569
TU203074 other upstream 1523587 25258839 ~ 25259362 (-) True G171569
TU203284 other upstream 1843687 25578939 ~ 25582527 (-) True G171734
TU204658 other upstream 4164239 27899491 ~ 27910890 (-) True si:ch73-204p21.2

Expression Profile