RNA id: XM_034308365.1


Basic Information

Item Value
RNA id XM_034308365.1
length 3679
RNA type mRNA
GC content 0.54
exon number 20
gene id syne3
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 25741075 ~ 25772866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTTCAGACCTTGTCAGGGACGCAGGTCGTTTATTGACAGTGAAGCTGCAGTAATACAgtagtgctgctgctgcttcctAGCTAGCTTCCTCTGGACAACTTTTGTACTCCGAAATCGCTTCGAGGACGTTTTTTTTTGCGTTTCAGATGCACAAGTAAAGgCACTGGTCAAGCCCATGACCCAGCAGGAGCAGAATGAGTTCAGGGAGAGATGGGAGGAGGCGCAGGCGTGGATGCAGGCCGTCCAGGAAAGACTTAAACTCAACGACAACACCGAAGGACCCAGAGCGGCTCTGGAGGCCCGACTGAAAGAGACGGAGAAAATCCACGAGTCGGAGCCGGAGGGCCGGATGAAAATGGAAGTGGCCCTGGTGGCCGCAGACGCTCTTCTCAAGAACGGAGATGAGGAGCTGAAGAACCACACTCACTCCAAACTTAAAGAACTTAAGACTCTCTGGGAGGAGACGTCCACCTACATCATCCACTGCCACAGCCGTATTGAGTGGGTGTGGCTGCACTGGAGCGAGTACCTGAAGGCCCACGAGGAGTTCTACATGTGGCTGGTGAAGGTGCAGCGGGTGGTGGAGCCTCAGCTGGAGCTGCAGCTGGCTCTGAGGGAGAAGCTGTGGCAGGTGGAGCATCACCGCGTGACCTGCAGTAACGTGAAGGCCCAGGAGCCGCTGTTGGAGCGCCTGCTGGACGAGGCCTCCACACTTTATAACCGCACCCAGGACCCCAGTGTGGACGAGCCTCAGAACAAACTGCAAGAGGCATACAACAACATCCGCACCAGGGTGGAGGAGAGGCTAGCTCTGGTGCAGAAGGTCGCAGAAGAGCATCAGCAGCACCAAAGCCGCGTTCATGATTTCCAAACATGGTTGGCGTCGAAAACAGTAGAAGTGAATCGTTTCAGGGAGATGGAGGACGTTTCGGAGAATCGACTACAAGCCCTGCAGGACCTGGATGCCAGCGTGGCCCGTGAAGAAGAGACATTAGTGTACATCGAAGGCCAGGCCGAGGCGGTGAAGGCCAACACGTCACCTGCAGGAGCTGAGCTAatcagagaggaagtggaagagcTGCGGCTGGAATGGCAGAGGATGCGGCTGGAGCTGCAGGAGATCCACACCAAGCTGAAGGGCTCTATGGATGCCCAGAGAGAGTACTACACCCGGCGAGAGGAGCTGGCAGCGGGCATCAAGCGGCTCCGAGCCCTTGTGCACAAAATGAGCCGGCAGCTGGAGAATAAGGATGGAGAGAGGAGTGAGGAGAACATGGTGGCTCAGTGGAAGAGCTATACCGATGTGAGGACAGTCCTCTCGGCCGAGGAGCCTCAGGTCGAGCAGCTTAAAGCCCAGCTGAAGGAGTTATACCGCTTCCCTTATGATTACCAACAACTTGCTGATGAAGTACTGACTGCAGTGAAAGAGTACCAGAGtgtgaaAGGACGCACGTTCCGGCTCTGCTCGGAGAGCGAGACAGCTCTGAAGCAGCTCCTACAGGATCCTGCTGTCTTTAGTCAGTGGAGTCCGCTGGCGTCTCAGATGCTCGACACCTCAGCCGAAGTGACCGACTTCTCCCACATGGCTGTGCTCGTGCAGAATATCGAGAAGCTCCTGAAAGACAGCGTGCAGCTGCAGGAGAGGCTCAGCTTGCTGCAGGTGAAAGCCGACCTGCTGAGCGCCGTGTTTGGCGAGGAGAAAGCCCAGAGCCTGCTGGAGGAGCTCAGTACAGACATGAAGAAGAGAGAGCAGCTTCACAGCCAACTTCTGCAGAGGAGAACTCGACTGCAGGAATTAATATCAACTACAAAGAATTTTGGTGATGCTTACGACTCTATTCACCAGAAGCTCATGTCTATAAAGGAGAGATTTCACGCTGCAGACGGACTCCAACCTGATATTCTCGCTAAGAAGAGCCAGGCTGACCAGCTGAAGGTCATTAAGAAAGATCTGGAAGACTGCGAGGCTCACATCACCGCTCTGGAGACGCTCGTCTCCTCCAGTCCCGCTAACAGGACCAAGTTCGAGCGTCTCTACTCCGACTGGAAGCTGCTCTATAAAGCTGTTCGGTCGAAGGCGAACGAAAGTGAGGAGAGTATTTTGGAGCACGAGAGTTTCCATGAGAGTCTACTGAACATGGAGAAATGGCTGATGATCATGAGGCAGAAGCTGGAGTCGTTTCGAGGACCGAACGGAGAGTGGAGCGTGGTGAACCGGCAGCATGAAGCAGAGAGGGCGCTGGGCGAGTTTCCAGAGAAGGAGCATCAGCTGCACAGGACCGAAGAGCAGGGTCACATCGTGCTGCTGAAAACCTCACAGGAGGGCAAAGTTCACATTCAGCGTGACCTCAGGCGCCTGCGCGAGTCCTGGATGTCTCTCCATGCGCTCAGTCTGAACCTGTACAGacTTCTGAATGGACACGGTGCCTCAGGAGAAATCGACTCTTCACTACACTCACACCATGCAGCCGATTTCCTGGAGGGAAGTGGTGGATCCTCAATCCGAGTCAGAGCAGATGGCCAATCGGGATTCGAGGACGACCTGCAGCTTCCTGAGGGCTCACGGATGGCCAGAGGTTCAGGAGGGTTCGAGGCTTTTGCCAAACACGGGAAATTCGTTACCAAACACGACGATGCGTCTCAAACAGAGGATGGGGAGTTCAGTCCTCGAGGTGGAATCCTATATCCTGATGAGAACGTCCAAGGAGTCTGGAGAGGGGAACCAAGAGGCCATTCCACTTCCACTGATGAAGTGGACTCGACTGCCATTGGACGAGGATATCAGGGTATCGGAGAGCAGAAAGATGGAGGACACACCCATGGAGCAGGAGCGATCAGGAAAATTGGATCCGGGAATCGAGGCAGAACAAGAGAATGGGTTGAAGAGCATTTATCTAGGGTAGAAGATGTTGGGATAATAAGTGAAGGCCACTATGCAAGAGATTCTGCTGACACGGCAAAACCCTCAAATACAGATGTTAGACCAAAACAGCTGTCTGCATTTACACACGTCACGGACGCTTCAGGTCATGGCTCCACTGACATCACTCAGGTGAGAGAGCGCAGATCTGATTGGAAATCTCGCAGGAGAGAGTTTGAGGCCTGGCTGCGTAAAGAAAACGAGAAACTCGCAGGGATTATGAACAACCAAAGAGCACTGAGCACCAAAGAACTGAAGATTAGACGGAACACACTCAAGGGCCTGCGTGCTGGCATACCGTGGGGTCAAGCTCAGTTCCAGCAGTTACTGAGCTCCTGGCAGGCTGAAGCAGGAACGGAGGATGTGGAACTGGAGGAGCTTCGCTACAGATGGATGCTTTATAAATCCAAACTGAAGGACGCTGAATGTGTTAAAGCTCAGCTCAAACTCCAGGATGAAGGAGTCCAGCAGGAGGAGCTTGTTCGGACCAGAAAgcAGGACAGCTGCTGTGGGTTCCTGTACCGTGTGTGTCGCGTGGCTCTCCCTCTGCAGCTGCTGCTCCTCGCTCTGCTGCTCTTCGCCTTCCTCCTGCCCATGATGGACGAGGGCACGAGCTGCTCGCTGTCCAACAACTTCGCCCGCTCTTTCAACATCATGCTGCGCTACCATGGCCCTCCGcccacctaaacacacacacgtacacacacgcacacacacacacacacacacacacacacacacacgcccgtAAGCAtgt

Function

GO: NA

KEGG:

id description
K21761 SYNE3; nesprin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203168 lncRNA upstream 148326 25587489 ~ 25592749 (+) True G171647
TU203132 lncRNA upstream 218386 25518116 ~ 25522689 (+) True G171619
TU203104 lncRNA upstream 310153 25426891 ~ 25430922 (+) True LOC113534148
TU203020 lncRNA upstream 351570 25389366 ~ 25389505 (+) True G171523
TU203019 lncRNA upstream 351909 25388772 ~ 25389166 (+) True G171522
XR_004579001.1 lncRNA downstream 853074 26625940 ~ 26686726 (+) True LOC117598331
TU203645 lncRNA downstream 1016657 26789523 ~ 26789807 (+) True G172052
XR_004578997.1 lncRNA downstream 1030190 26803056 ~ 26839478 (+) True LOC117598329
XR_004578998.1 lncRNA downstream 1030190 26803056 ~ 26839478 (+) False LOC117598329
TU203694 lncRNA downstream 1094251 26867117 ~ 26960238 (+) True G172099
XM_026926558.2 mRNA upstream 2405 25719525 ~ 25738670 (+) True gabrr2a
XM_026926879.2 mRNA upstream 36267 25684849 ~ 25704808 (+) True rragd
XM_034307768.1 mRNA upstream 158437 25578893 ~ 25582638 (+) True marcksb
XM_026926060.2 mRNA upstream 159322 25578893 ~ 25581753 (+) False marcksb
XM_026925940.2 mRNA upstream 234565 25504482 ~ 25506510 (+) True fabp7a
XM_034308118.1 mRNA downstream 21709 25794575 ~ 25828035 (+) True clmn
XM_026926431.2 mRNA downstream 21709 25794575 ~ 25828035 (+) False clmn
XM_026926595.2 mRNA downstream 56999 25829865 ~ 25858423 (+) True dicer1
XM_026926596.2 mRNA downstream 56999 25829865 ~ 25854208 (+) False dicer1
XM_026926597.2 mRNA downstream 56999 25829865 ~ 25854208 (+) False dicer1
TU202966 other upstream 422814 25315560 ~ 25318261 (+) False samd4a
TU202922 other upstream 564243 25176376 ~ 25176832 (+) False LOC117598238
TU202767 other upstream 733309 25003983 ~ 25007766 (+) True G171329
TU202761 other upstream 741026 24994493 ~ 25000049 (+) False cx28.6
trnar-acg_3 other upstream 1311413 24429590 ~ 24429662 (+) True trnar-acg_3
trnat-ugu_12 other downstream 1142492 26915358 ~ 26915430 (+) True trnat-ugu_12
XR_003403449.2 other downstream 1383477 27156343 ~ 27465649 (+) False nrxn3a
XR_003403450.2 other downstream 1383477 27156343 ~ 27465649 (+) False nrxn3a
XR_003403451.2 other downstream 1383477 27156343 ~ 27465649 (+) False nrxn3a
trnak-uuu_7 other downstream 1952341 27725207 ~ 27725279 (+) True trnak-uuu_7

Expression Profile