RNA id: XR_003403127.1


Basic Information

Item Value
RNA id XR_003403127.1
length 123
RNA type ncRNA
GC content 0.38
exon number 1
gene id LOC113530231
representative True

Chromosome Information

Item Value
chromosome id NC_047604.1
NCBI id CM018550.1
chromosome length 29376037
location 20732930 ~ 20733052 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCTGTATGAAAGGAGCGAAAGTTAGTCCTCCCTTTGACAAGGATGGAAAAAGGTCCTACAACTGGTATGCCACACACATACGATATATAAAATGGGTATATAATGAACTAGATAGGTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200211 lncRNA downstream 159317 20573407 ~ 20573613 (-) True G169126
TU200194 lncRNA downstream 168102 20564456 ~ 20564828 (-) False G169118
TU200196 lncRNA downstream 168224 20564155 ~ 20564706 (-) True G169118
TU200182 lncRNA downstream 185053 20547645 ~ 20547877 (-) True G169109
TU200177 lncRNA downstream 192647 20538862 ~ 20540283 (-) True G169104
TU200372 lncRNA upstream 355374 21088426 ~ 21119625 (-) False bmf1
TU200371 lncRNA upstream 370171 21103223 ~ 21106375 (-) False bmf1
TU200477 lncRNA upstream 497891 21230943 ~ 21241630 (-) True LOC113529548
TU200479 lncRNA upstream 505882 21238934 ~ 21241630 (-) False LOC113529548
XR_003403066.2 lncRNA upstream 505998 21239050 ~ 21241637 (-) False LOC113529548
XM_026919849.2 mRNA downstream 4103 20569883 ~ 20728827 (-) False LOC113530100
XM_026919848.2 mRNA downstream 4103 20569883 ~ 20728827 (-) False LOC113530100
XM_026919844.2 mRNA downstream 4103 20569883 ~ 20728827 (-) False LOC113530100
XM_026919835.2 mRNA downstream 4103 20569883 ~ 20728827 (-) False LOC113530100
XM_026919834.2 mRNA downstream 4103 20569883 ~ 20728827 (-) False LOC113530100
XM_026919607.2 mRNA upstream 80637 20813689 ~ 20817439 (-) True grem1b
XM_026919913.2 mRNA upstream 88749 20821801 ~ 20835679 (-) False arhgap11a
XM_026919912.2 mRNA upstream 88749 20821801 ~ 20835679 (-) True arhgap11a
XM_026918822.2 mRNA upstream 105005 20838057 ~ 20842152 (-) True actc1b
XM_034307770.1 mRNA upstream 163582 20896634 ~ 20956265 (-) True LOC113530222
TU200198 other downstream 167131 20564929 ~ 20565799 (-) True G169119
TU199915 other downstream 402186 20322764 ~ 20330744 (-) True gchfr
TU199706 other downstream 714236 20013579 ~ 20018694 (-) True srp14
TU199357 other downstream 1138153 19590068 ~ 19594777 (-) False LOC113538862
TU198915 other downstream 1766317 18961708 ~ 18966613 (-) True G168015
TU200304 other upstream 81509 20814561 ~ 20817216 (-) False grem1b
TU201211 other upstream 1382513 22115565 ~ 22115876 (-) True G170023
TU201673 other upstream 2122442 22855494 ~ 22863767 (-) True G170435
TU202681 other upstream 4068031 24801083 ~ 24807095 (-) False G171256
TU203072 other upstream 4525787 25258839 ~ 25259209 (-) False G171569